Pregenerated sensors for VPS39-DT (Homo sapiens)

Ensembl gene IDs: ENSG00000261002

Ensembl transcript IDs: ENST00000561800.1, ENST00000563846.5

Found 16 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	CTTCTCCCCTGTATTGTAGGACTGGCGGGAGCTGTGGGTAGACGATaGCATCTGGCGCTTGCTGTTCTCCATGATCCTCTTTGTCATCAT	+
Preference number: 5 (lower is better) Translates to: LLPCIVGLAGAVGRR*HLALAVLHDPLCHH Trigger: ATGATGACAAAGAGGATCATGGAGAACAGCAAGCGCCAGATGGCATCGTCTACCCACAGCTCCCGCCAGTCCTACAATACAGGGGAGAAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS CCA 90 bp	TGGCGCTTGCTGTTCTCCATGATCCTCTTTGTCATCATGGTTCTCTaGCGACCATCTGCAAACAACCAGAGGTTCTTGGACTCTTCTGTT	+
Preference number: 5 (lower is better) Translates to: WRLLFSMILFVIMVL*RPSANNQRFLDSSV Trigger: AACAGAAGAGTCCAAGAACCTCTGGTTGTTTGCAGATGGTCGCCAGAGAACCATGATGACAAAGAGGATCATGGAGAACAGCAAGCGCCA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS TCA 90 bp	TGCTGTTCCCTTCGAGTTTCAGATTCAGTAGAACTGGAATGGGCCTaGAACTTTGCATTTCTAACAAGTTCACAGGTGCTGCTGCTACTG	+
Preference number: 5 (lower is better) Translates to: CCSLRVSDSVELEWA*NFAFLTSSQVLLLL Trigger: CAGTAGCAGCAGCACCTGTGAACTTGTTAGAAATGCAAAGTTTCAGGCCCATTCCAGTTCTACTGAATCTGAAACTCGAAGGGAACAGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561800.1 ENST00000563846.5
CDS GCA 90 bp	CCTTCGAGTTTCAGATTCAGTAGAACTGGAATGGGCCTGAAACTTTaGATTTCTAACAAGTTCACAGGTGCTGCTGCTACTGCTGTTGTT	+
Preference number: 5 (lower is better) Translates to: PSSFRFSRTGMGLKL*ISNKFTGAAATAVV Trigger: AACAACAGCAGTAGCAGCAGCACCTGTGAACTTGTTAGAAATGCAAAGTTTCAGGCCCATTCCAGTTCTACTGAATCTGAAACTCGAAGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561800.1 ENST00000563846.5
CDS CCA 90 bp	ATGGTGATAGCAGGTAGAGTCTGGGGAAATCTGTATTTTCTTTCCTaGTGTTCGGTCTCTCTTCTGAGGAAGTACATCAAGTCAGTTCTT	+
Preference number: 5 (lower is better) Translates to: MVIAGRVWGNLYFLS*CSVSLLRKYIKSVL Trigger: AAGAACTGACTTGATGTACTTCCTCAGAAGAGAGACCGAACACCAGGAAAGAAAATACAGATTTCCCCAGACTCTACCTGCTATCACCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS TCA 90 bp	ACCATCTGCAAACAACCAGAGGTTCTTGGACTCTTCTGTTTACTCTaGGTTAAGGTGTATTACAACAAAATGGTGATAGCAGGTAGAGTC	+
Preference number: 5 (lower is better) Translates to: TICKQPEVLGLFCLL*VKVYYNKMVIAGRV Trigger: GACTCTACCTGCTATCACCATTTTGTTGTAATACACCTTAACTCAGAGTAAACAGAAGAGTCCAAGAACCTCTGGTTGTTTGCAGATGGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS GCA 72 bp	TGTATTGTAGGACTGGCGGGAGCTGTGGGTAGACGATaGCATCTGGCGCTTGCTGTTCTCCATGATCCTCTT	+
Preference number: 6 (lower is better) Translates to: CIVGLAGAVGRR*HLALAVLHDPL Trigger: AAGAGGATCATGGAGAACAGCAAGCGCCAGATGGCATCGTCTACCCACAGCTCCCGCCAGTCCTACAATACA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS TCA 72 bp	TGTTGCTGGTCTAGAACCACTTTCAGAACCACTGGCTaGGAGCTTAGTGGGTGTCAGGTGTTGCTAAGCGCT	+
Preference number: 6 (lower is better) Translates to: CCWSRTTFRTTG*ELSGCQVLLSA Trigger: AGCGCTTAGCAACACCTGACACCCACTAAGCTCTCAGCCAGTGGTTCTGAAAGTGGTTCTAGACCAGCAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561800.1 ENST00000563846.5
CDS GCA 72 bp	GATCCTCTTTGTCATCATGGTTCTCTGGCGACCATCTaGAAACAACCAGAGGTTCTTGGACTCTTCTGTTTA	+
Preference number: 6 (lower is better) Translates to: DPLCHHGSLATI*KQPEVLGLFCL Trigger: TAAACAGAAGAGTCCAAGAACCTCTGGTTGTTTGCAGATGGTCGCCAGAGAACCATGATGACAAAGAGGATC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS CCA 72 bp	GCAGGTAGAGTCTGGGGAAATCTGTATTTTCTTTCCTaGTGTTCGGTCTCTCTTCTGAGGAAGTACATCAAG	+
Preference number: 6 (lower is better) Translates to: AGRVWGNLYFLS*CSVSLLRKYIK Trigger: CTTGATGTACTTCCTCAGAAGAGAGACCGAACACCAGGAAAGAAAATACAGATTTCCCCAGACTCTACCTGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS TCA 72 bp	CTTCGAGTTTCAGATTCAGTAGAACTGGAATGGGCCTaGAACTTTGCATTTCTAACAAGTTCACAGGTGCTG	+
Preference number: 6 (lower is better) Translates to: LRVSDSVELEWA*NFAFLTSSQVL Trigger: CAGCACCTGTGAACTTGTTAGAAATGCAAAGTTTCAGGCCCATTCCAGTTCTACTGAATCTGAAACTCGAAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000561800.1 ENST00000563846.5
CDS CAA 90 bp	TCTGAGTTAAGGAGCCATAGTTCTTGGGGTTTATTAAAACATAGGTaGCTGTTCCCTTCGAGTTTCAGATTCAGTAGAACTGGAATGGGC	+
Preference number: 6 (lower is better) Translates to: SELRSHSSWGLLKHR*LFPSSFRFSRTGMG Trigger: GCCCATTCCAGTTCTACTGAATCTGAAACTCGAAGGGAACAGCAACCTATGTTTTAATAAACCCCAAGAACTATGGCTCCTTAACTCAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000561800.1
CDS CAA 90 bp	GTCATCATGGTTCTCTGGCGACCATCTGCAAACAACCAGAGGTTCTaGGACTCTTCTGTTTACTCTGAGTTAAGGTGTATTACAACAAAA	+
Preference number: 6 (lower is better) Translates to: VIMVLWRPSANNQRF*DSSVYSELRCITTK Trigger: TTTTGTTGTAATACACCTTAACTCAGAGTAAACAGAAGAGTCCAAGAACCTCTGGTTGTTTGCAGATGGTCGCCAGAGAACCATGATGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS CAA 72 bp	ACTGGGTATATACCTTGGGGTTTATTAAAACATAGGTaGCTGTTCCCTTCGAGTTTCAGATTCAGTAGAACT	+
Preference number: 6 (lower is better) Translates to: TGYIPWGLLKHR*LFPSSFRFSRT Trigger: AGTTCTACTGAATCTGAAACTCGAAGGGAACAGCAACCTATGTTTTAATAAACCCCAAGGTATATACCCAGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS TCA 72 bp	AAACAACCAGAGGTTCTTGGACTCTTCTGTTTACTCTaGGTTAAGGTGTATTACAACAAAATGGTGATAGCA	+
Preference number: 6 (lower is better) Translates to: KQPEVLGLFCLL*VKVYYNKMVIA Trigger: TGCTATCACCATTTTGTTGTAATACACCTTAACTCAGAGTAAACAGAAGAGTCCAAGAACCTCTGGTTGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000563846.5
CDS CAA 72 bp	GCTCACGACACTAGGTCACAGGTATTTACAAAAATTTaGCAGATTAGGAAAGTATGGCATCGAAATATTAAA	+
Preference number: 6 (lower is better) Translates to: AHDTRSQVFTKI*QIRKVWHRNIK Trigger: TTTAATATTTCGATGCCATACTTTCCTAATCTGCAAAATTTTTGTAAATACCTGTGACCTAGTGTCGTGAGC 35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000563846.5

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