Pregenerated sensors for VPS29 (Homo sapiens)
Ensembl gene IDs: ENSG00000111237Ensembl transcript IDs: ENST00000360579.11, ENST00000447578.6, ENST00000546588.1, ENST00000548259.1, ENST00000549578.6, ENST00000549970.5, ENST00000550267.1, ENST00000551655.1, ENST00000552130.6, ENST00000553128.5, ENST00000621131.4
Found 41 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCGATTCTTTCTCCACATaGACTACTTTTGGAATAAAG | + |
|
Preference number: 2 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFDSFST*TTFGIK Trigger: CTTTATTCCAAAAGTAGTGCATGTGGAGAAAGAATC...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR GCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCGTGATCTCGGCTCACTaGAACCTCCAACTCCAGGAT | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFVISAH*NLQLQD Trigger: ATCCTGGAGTTGGAGGTTGCAGTGAGCCGAGATCAC...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549578.6 |
||
| CDS-3UTR GCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCTTGACCAGGCTGGAGTaGAATGGTGTGATCTCGGCT | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFLTRLE*NGVISA Trigger: AGCCGAGATCACACCATTGCACTCCAGCCTGGTCAA...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549578.6 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCGCAACAGGGCTAAGCTaGCCATATCTCCCCATGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFATGLS*PYLPME Trigger: TTCCATGGGGAGATATGGCCAGCTTAGCCCTGTTGC...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCAGCCTCCCGAGTAGCTaGGAATACAGGCATGTAGCA | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFSLPSS*EYRHVA Trigger: TGCTACATGCCTGTATTCCCAGCTACTCGGGAGGCT...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549578.6 |
||
| CDS-3UTR TCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCACTCCAGGATTCAAGTaGTTCTACTGCCTCAGCCTC | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFTPGFK*FYCLSL Trigger: GAGGCTGAGGCAGTAGAATCACTTGAATCCTGGAGT...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549578.6 |
||
| CDS-3UTR GCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCCACCGGTGTGGGATGTaGAGATCTCCTAATACCAAC | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFHRCGM*RSPNTN Trigger: GTTGGTATTAGGAGATCTGCACATCCCACACCGGTG...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR GCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCTTCCAAGGCATTATATaGCCCAGTGGCAGAACCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFFQGII*PSGRTW Trigger: CCAGGTTCTGCCACTGGGGCATATAATGCCTTGGAA...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR TCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCTCTCCTCTCACAATATaGACATCACCAGCCAGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFSPLTI*TSPARV Trigger: GACTCTGGCTGGTGATGTTCATATTGTGAGAGGAGA...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR TCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCCCCCATGGAATAACTTaGTGTCCATGGATCAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFPHGIT*CPWIRP Trigger: TGGTCTGATCCATGGACATCAAGTTATTCCATGGGG...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR TCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCGTAAGAGAAGAGCTCTaGAAGGTCATCTCGTCCACT | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFVREEL*KVISST Trigger: AGTGGACGAGATGACCTTTCAGAGCTCTTCTCTTAC...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549578.6 |
||
| CDS-3UTR TCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCCACCAGCCAGAGTCTTaGGATAGTCATAACTCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFHQPES*DSHNSL Trigger: AAGAGAGTTATGACTATCTCAAGACTCTGGCTGGTG...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR GCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCATGTCCACATCAAATTaGCTCTGCAACAGGGCTAAG | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFMSTSN*LCNRAK Trigger: CTTAGCCCTGTTGCAGAGGCAATTTGATGTGGACAT...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCGGCCATATCTCCCCATaGAATAACTTGATGTCCATG | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFGHISP*NNLMSM Trigger: CATGGACATCAAGTTATTCCATGGGGAGATATGGCC...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR TCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCGGATCAGACCAATTTTaGACTGTCCAACAGTCACAA | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFGSDQF*TVQQSQ Trigger: TTGTGACTGTTGGACAGTTCAAAATTGGTCTGATCC...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR GCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCCATAACTCTCTTTGGTaGAAAGGTTTCCTGTGCAGA | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFHNSLW*KGFLCR Trigger: TCTGCACAGGAAACCTTTGCACCAAAGAGAGTTATG...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCAGTCATAACTCTCTTTaGTGCAAAGGTTTCCTGTGC | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFSHNSL*CKGFLC Trigger: GCACAGGAAACCTTTGCACCAAAGAGAGTTATGACT...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR TCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCCTGAGTCCAACATTATaGCACAATGTAAGAGAAGAG | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFLSPTL*HNVREE Trigger: CTCTTCTCTTACATTGTGTCATAATGTTGGACTCAG...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000549578.6 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCACCACTGTAGAAGCCTaGATATCCATCAACACAAAT | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFTTVEA*ISINTN Trigger: ATTTGTGTTGATGGATATCCAGGCTTCTACAGTGGT...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR GCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCAGGCATGTAGCACCATaGTGGCTAATTTTGTATTTT | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFRHVAP*WLILYF Trigger: AAAATACAAAATTAGCCAGCATGGTGCTACATGCCT...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000549578.6 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCCCCAGTGGCAGAACCTaGATTAATGTAGAATTTATT | + |
|
Preference number: 4 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFPSGRT*INVEFI Trigger: AATAAATTCTACATTAATCCAGGTTCTGCCACTGGG...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS GCA 90 bp | CACCGGTGTGGGATGTGCAGATCTCCTAATACCAACACCAATCTGTaGCCAGCCATCCTGTCACCGGGCTCCGCTCAGTCACCACCACCG | + |
|
Preference number: 5 (lower is better) Translates to: HRCGMCRSPNTNTNL*PAILSPGSAQSPPP Trigger: CGGTGGTGGTGACTGAGCGGAGCCCGGTGACAGGATGGCTGGGCACAGATTGGTGTTGGTATTAGGAGATCTGCACATCCCACACCGGTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000360579.11 |
||
| CDS CCA 90 bp | ACCAACACCAATCTGTGCCCAGCCCTAAAGAGGCGTAGCAACCCGTaGAAAGAAACAGTTCCAGCAATTGCAAGCGCCAAATCCCGCCCT | + |
|
Preference number: 5 (lower is better) Translates to: TNTNLCPALKRRSNP*KETVPAIASAKSRP Trigger: AGGGCGGGATTTGGCGCTTGCAATTGCTGGAACTGTTTCTTTCCACGGGTTGCTACGCCTCTTTAGGGCTGGGCACAGATTGGTGTTGGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000546588.1 ENST00000621131.4 |
||
| CDS TCA 90 bp | GGAAAGAAACAGTTCCAGCAATTGCAAGCGCCAAATCCCGCCCTCTaGGAGCACACCTGCTCATCTCAATGGCAGCTAGATGTTATTTCA | + |
|
Preference number: 5 (lower is better) Translates to: GKKQFQQLQAPNPAL*EHTCSSQWQLDVIS Trigger: TGAAATAACATCTAGCTGCCATTGAGATGAGCAGGTGTGCTCTCAGAGGGCGGGATTTGGCGCTTGCAATTGCTGGAACTGTTTCTTTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546588.1 |
||
| CDS TCA 90 bp | CTCTGCAACAGGGCTAAGCTGGCCATATCTCCCCATGGAATAACTTaGTGTCCATGGATCAGACCAATTTTGAACTGTCCAACAGTCACA | + |
|
Preference number: 5 (lower is better) Translates to: LCNRAKLAISPHGIT*CPWIRPILNCPTVT Trigger: TGTGACTGTTGGACAGTTCAAAATTGGTCTGATCCATGGACATCAAGTTATTCCATGGGGAGATATGGCCAGCTTAGCCCTGTTGCAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENST00000360579.11 ENST00000447578.6 ENST00000546588.1 ENST00000548259.1 ENST00000549578.6 ENST00000549970.5 ENST00000552130.6 ENST00000621131.4 |
||
| CDS-3UTR CAA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCTTAGCTGGCAAACTGTaGCACCGGTGTGGGATGTGC | + |
|
Preference number: 5 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFLAGKL*HRCGMC Trigger: GCACATCCCACACCGGTGCAACAGTTTGCCAGCTAA...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS GCA 90 bp | TTATTAGAAGTCCTCACTGTCATATTTTTATGGTCTGGATTAAATTaGTCATATATCCTCGGTATAGTTCCCCAACATCCTGTCACCGGG | + |
|
Preference number: 5 (lower is better) Translates to: LLEVLTVIFLWSGLN*SYILGIVPQHPVTG Trigger: CCCGGTGACAGGATGTTGGGGAACTATACCGAGGATATATGAGCAATTTAATCCAGACCATAAAAATATGACAGTGAGGACTTCTAATAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000551655.1 |
||
| CDS-3UTR CAA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCTGGATCAGACCAATTTaGAACTGTCCAACAGTCACA | + |
|
Preference number: 5 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFWIRPI*NCPTVT Trigger: TGTGACTGTTGGACAGTTCAAAATTGGTCTGATCCA...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS-3UTR CAA 90 bp | CTGAAAGGTCATCTCGTCCACTTTAATATTTATATCCGTAGTTTCACTTGGTTCTCAAATGCTTCAAATTaGTGTGTGTGTCCCGAGATA | + |
|
Preference number: 5 (lower is better) Translates to: LKGHLVHFNIYIRSFTWFSNASN*CVCPEI Trigger: TATCTCGGGACACACACACAAATTTGAAGCATTTGA...GAACCAAGTGAAACTACGGATATAAATATTAAAGTGGACGAGATGACCTTTCAG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000360579.11 ENST00000549578.6 |
||
| CDS CCA 90 bp | CTTTCCTTCATTATTAGAAGTCCTCACTGTCATATTTTTATGGTCTaGATTAAATTGCTCATATATCCTCGGTATAGTTCCCCAACTGGA | + |
|
Preference number: 5 (lower is better) Translates to: LSFIIRSPHCHIFMV*IKLLIYPRYSSPTG Trigger: TCCAGTTGGGGAACTATACCGAGGATATATGAGCAATTTAATCCAGACCATAAAAATATGACAGTGAGGACTTCTAATAATGAAGGAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553128.5 |
||
| CDS CCA 90 bp | CTTTCCTTCATTATTAGAAGTCCTCACTGTCATATTTTTATGGTCTaGATTAAATTGCTCATATATCCTCGGTATAGTTCCCCAACATCC | + |
|
Preference number: 5 (lower is better) Translates to: LSFIIRSPHCHIFMV*IKLLIYPRYSSPTS Trigger: GGATGTTGGGGAACTATACCGAGGATATATGAGCAATTTAATCCAGACCATAAAAATATGACAGTGAGGACTTCTAATAATGAAGGAAAG 37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000551655.1 |
||
| CDS GCA 72 bp | GGGATGTGCAGATCTCCTAATACCAACACCAATCTGTaGCCAGCCATCCTGTCACCGGGCTCCGCTCAGTCA | + |
|
Preference number: 6 (lower is better) Translates to: GMCRSPNTNTNL*PAILSPGSAQS Trigger: TGACTGAGCGGAGCCCGGTGACAGGATGGCTGGGCACAGATTGGTGTTGGTATTAGGAGATCTGCACATCCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000360579.11 |
||
| CDS TCA 72 bp | CAGTTCCAGCAATTGCAAGCGCCAAATCCCGCCCTCTaGGAGCACACCTGCTCATCTCAATGGCAGCTAGAT | + |
|
Preference number: 6 (lower is better) Translates to: QFQQLQAPNPAL*EHTCSSQWQLD Trigger: ATCTAGCTGCCATTGAGATGAGCAGGTGTGCTCTCAGAGGGCGGGATTTGGCGCTTGCAATTGCTGGAACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000546588.1 |
||
| CDS CCA 72 bp | AATCTGTGCCCAGCCCTAAAGAGGCGTAGCAACCCGTaGAAAGAAACAGTTCCAGCAATTGCAAGCGCCAAA | + |
|
Preference number: 6 (lower is better) Translates to: NLCPALKRRSNP*KETVPAIASAK Trigger: TTTGGCGCTTGCAATTGCTGGAACTGTTTCTTTCCACGGGTTGCTACGCCTCTTTAGGGCTGGGCACAGATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000546588.1 ENST00000621131.4 |
||
| CDS GCA 72 bp | TGTGTGTGTCCCGAGATAAGAATGTCCACATCAAATTaGCTCTGCAACAGGGCTAAGCTGGCCATATCTCCC | + |
|
Preference number: 6 (lower is better) Translates to: CVCPEIRMSTSN*LCNRAKLAISP Trigger: GGGAGATATGGCCAGCTTAGCCCTGTTGCAGAGGCAATTTGATGTGGACATTCTTATCTCGGGACACACACA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 8 transcripts: ENST00000360579.11 ENST00000447578.6 ENST00000546588.1 ENST00000548259.1 ENST00000549578.6 ENST00000549970.5 ENST00000552130.6 ENST00000621131.4 |
||
| CDS TCA 72 bp | AGGGCTAAGCTGGCCATATCTCCCCATGGAATAACTTaGTGTCCATGGATCAGACCAATTTTGAACTGTCCA | + |
|
Preference number: 6 (lower is better) Translates to: RAKLAISPHGIT*CPWIRPILNCP Trigger: TGGACAGTTCAAAATTGGTCTGATCCATGGACATCAAGTTATTCCATGGGGAGATATGGCCAGCTTAGCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 8 transcripts: ENST00000360579.11 ENST00000447578.6 ENST00000546588.1 ENST00000548259.1 ENST00000549578.6 ENST00000549970.5 ENST00000552130.6 ENST00000621131.4 |
||
| CDS TCA 72 bp | TACTTTGAAACATGTTCCCGCCCAAATTCCACACTTTaGCAAATCGGGATAGACATAGATGATAGAGTCCTT | + |
|
Preference number: 6 (lower is better) Translates to: YFETCSRPNSTL*QIGIDIDDRVL Trigger: AAGGACTCTATCATCTATGTCTATCCCGATTTGTCAAAGTGTGGAATTTGGGCGGGAACATGTTTCAAAGTA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000550267.1 |
||
| CDS CAA 72 bp | TATGGGGAAATAGTGTTACATAACACGTGTCATACTTaGAAACATGTTCCCGCCCAAATTCCACACTTTGAC | + |
|
Preference number: 6 (lower is better) Translates to: YGEIVLHNTCHT*KHVPAQIPHFD Trigger: GTCAAAGTGTGGAATTTGGGCGGGAACATGTTTCAAAGTATGACACGTGTTATGTAACACTATTTCCCCATA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000550267.1 |
||
| CDS CAA 90 bp | ATTATTAGAAGTCCTCACTGTCATATTTTTATGGTCTGGATTAAATaGCTCATATATCCTCGGTATAGTTCCCCAACATCCTGTCACCGG | + |
|
Preference number: 6 (lower is better) Translates to: IIRSPHCHIFMVWIK*LIYPRYSSPTSCHR Trigger: CCGGTGACAGGATGTTGGGGAACTATACCGAGGATATATGAGCAATTTAATCCAGACCATAAAAATATGACAGTGAGGACTTCTAATAAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000551655.1 |
||
| CDS GCA 72 bp | GTCCTCACTGTCATATTTTTATGGTCTGGATTAAATTaGTCATATATCCTCGGTATAGTTCCCCAACTGGAT | + |
|
Preference number: 6 (lower is better) Translates to: VLTVIFLWSGLN*SYILGIVPQLD Trigger: ATCCAGTTGGGGAACTATACCGAGGATATATGAGCAATTTAATCCAGACCATAAAAATATGACAGTGAGGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000553128.5 |
||
| CDS GCA 72 bp | GTCCTCACTGTCATATTTTTATGGTCTGGATTAAATTaGTCATATATCCTCGGTATAGTTCCCCAACATCCT | + |
|
Preference number: 6 (lower is better) Translates to: VLTVIFLWSGLN*SYILGIVPQHP Trigger: AGGATGTTGGGGAACTATACCGAGGATATATGAGCAATTTAATCCAGACCATAAAAATATGACAGTGAGGAC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000551655.1 |
||