RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VIP (Homo sapiens)

Ensembl gene IDs: ENSG00000146469

Ensembl transcript IDs: ENST00000367243.7, ENST00000367244.8, ENST00000431366.1

Found 66 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGCCTTCAAGAATTCACTaGGAAGTTGTCATCAGCTTT +
Preference number: 2 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGPSRIH*EVVISF
Trigger: AAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR GCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGCCTCTCGCCCAGTCGTaGTCCCCCGGAGCTGACTGT +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGPLAQS*SPGADC
Trigger: ACAGTCAGCTCCGGGGGAGCACGACTGGGCGAGAGG...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCTTCTGTCACCCAACCTaGGAGCAGAAGGTGCCCTGT +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFFCHPT*EQKVPC
Trigger: ACAGGGCACCTTCTGCTCTCAGGTTGGGTGACAGAA...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR GCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCTGGTGTCCATTTCTGTaGCTCTCGCCCAGTCGTGCT +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFWCPFL*LSPSRA
Trigger: AGCACGACTGGGCGAGAGGCACAGAAATGGACACCA...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGGTGCTCCCCCGGAGCTaGCTGTTCTGGTTTGTTTTG +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGVLPRS*LFWFVL
Trigger: CAAAACAAACCAGAACAGTCAGCTCCGGGGGAGCAC...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGTTCTGTCACCCAACCTaGGAGCAGAAGGTGCCCTGT +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGFCHPT*EQKVPC
Trigger: ACAGGGCACCTTCTGCTCTCAGGTTGGGTGACAGAA...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR GCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGCCTGAGAGCAGAAGGTaGCCTGTAAAGAGGCCATGC +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGPESRR*PVKRPC
Trigger: GCATGGCCTCTTTACAGGGCACCTTCTGCTCTCAGG...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCGTGAGAAGAGCACACTaGGAAGAGTCAGGAGCACAA +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFVRRAH*EESGAQ
Trigger: TTGTGCTCCTGACTCTTCTCAGTGTGCTCTTCTCAC...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGCCATGCCGAAGTCTGTaGGAAGAGCACACTGAGAAG +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGPCRSL*EEHTEK
Trigger: CTTCTCAGTGTGCTCTTCTCACAGACTTCGGCATGG...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCCATCTGAGTGACGTTTaGCTGGTACAGGGTCTTCTG +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFHLSDV*LVQGLL
Trigger: CAGAAGACCCTGTACCAGTCAAACGTCACTCAGATG...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR GCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCTTGGCTGTTACTGCCTaGTGGTGCTTCTCACTCTAC +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFLAVTA*WCFSLY
Trigger: GTAGAGTGAGAAGCACCAGCAGGCAGTAACAGCCAA...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR CCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGGCAATGGCTAAGGGTTaGCTGTTACTGCCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGAMAKG*LLLPAG
Trigger: ACCAGCAGGCAGTAACAGCCAACCCTTAGCCATTGC...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR CCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCGCTGGGCCTTATTTCTaGTGTCCATTTCTGTGCCTC +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFAGPYF*CPFLCL
Trigger: GAGGCACAGAAATGGACACCAGAAATAAGGCCCAGC...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR CCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGAGGAGCACAAGGAGCTaGGCCTTATTTCTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGRSTRS*ALFLVS
Trigger: GGACACCAGAAATAAGGCCCAGCTCCTTGTGCTCCT...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCAGTGAAGACTGCATCTaGGTGACGTTTGACTGGTAC +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFSEDCI*VTFDWY
Trigger: GTACCAGTCAAACGTCACTCAGATGCAGTCTTCACT...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCGGGTATAGTTGTCAGTaGAGACTGCATCTGAGTGAC +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFGYSCQ*RLHLSD
Trigger: GTCACTCAGATGCAGTCTTCACTGACAACTATACCC...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR GCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGGTGTCCATTTCTGTaGCTCTCGCCCAGTCGTGCT +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLWCPFL*LSPSRA
Trigger: AGCACGACTGGGCGAGAGGCACAGAAATGGACACCA...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR GCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTCCTGAGAGCAGAAGGTaGCCTGTAAAGAGGCCATGC +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSAPESRR*PVKRPC
Trigger: GCATGGCCTCTTTACAGGGCACCTTCTGCTCTCAGG...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTCCATGCCGAAGTCTGTaGGAAGAGCACACTGAGAAG +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLPCRSL*EEHTEK
Trigger: CTTCTCAGTGTGCTCTTCTCACAGACTTCGGCATGG...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGAGTGAAGACTGCATCTaGGTGACGTTTGACTGGTAC +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGSEDCI*VTFDWY
Trigger: GTACCAGTCAAACGTCACTCAGATGCAGTCTTCACT...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGGGGTATAGTTGTCAGTaGAGACTGCATCTGAGTGAC +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGGYSCQ*RLHLSD
Trigger: GTCACTCAGATGCAGTCTTCACTGACAACTATACCC...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR GCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTAGGGTTGGCTGTTACTaGCTGCTGGTGCTTCTCACT +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSARVGCY*LLVLLT
Trigger: AGTGAGAAGCACCAGCAGGCAGTAACAGCCAACCCT...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR GCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTAGGGTTGGCTGTTACTaGCTGCTGGTGCTTCTCACT +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLRVGCY*LLVLLT
Trigger: AGTGAGAAGCACCAGCAGGCAGTAACAGCCAACCCT...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR CCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTGCAATGGCTAAGGGTTaGCTGTTACTGCCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSAAMAKG*LLLPAG
Trigger: ACCAGCAGGCAGTAACAGCCAACCCTTAGCCATTGC...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR CCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTAGGAGCACAAGGAGCTaGGCCTTATTTCTGGTGTCC +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSARSTRS*ALFLVS
Trigger: GGACACCAGAAATAAGGCCCAGCTCCTTGTGCTCCT...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR CCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTGCTGTTACTGCCTGCTaGTGCTTCTCACTCTACCCT +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSAAVTAC*CFSLYP
Trigger: AGGGTAGAGTGAGAAGCACCAGCAGGCAGTAACAGC...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000367244.8
CDS-3UTR TCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTAGCTGTCTTAGGTGCTaGAGTCCTGGGAGTAAGAGA +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSASCLRC*SPGSKR
Trigger: TCTCTTACTCCCAGGACTTCAGCACCTAAGACAGCT...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTAGCTGTCTTAGGTGCTaGAGTCCTGGGAGTAAGAGA +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLSCLRC*SPGSKR
Trigger: TCTCTTACTCCCAGGACTTCAGCACCTAAGACAGCT...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTGTGAGAAGAGCACACTaGGAAGAGTCAGGAGCACAA +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSAVRRAH*EESGAQ
Trigger: TTGTGCTCCTGACTCTTCTCAGTGTGCTCTTCTCAC...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR TCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCTGGTACAGGGTCTTCTaGGATGTTACTAACACGTTT +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFWYRVF*DVTNTF
Trigger: AAACGTGTTAGTAACATCTCAGAAGACCCTGTACCA...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000367243.7
CDS-3UTR TCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTCATCTGAGTGACGTTTaGCTGGTACAGGGTCTTCTG +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLHLSDV*LVQGLL
Trigger: CAGAAGACCCTGTACCAGTCAAACGTCACTCAGATG...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTAAGACTGCATCTGAGTaGCGTTTGACTGGTACAGGG +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSAKTASE*RLTGTG
Trigger: CCCTGTACCAGTCAAACGTCACTCAGATGCAGTCTT...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR GCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTTGGCTGTTACTGCCTaGTGGTGCTTCTCACTCTAC +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLLAVTA*WCFSLY
Trigger: GTAGAGTGAGAAGCACCAGCAGGCAGTAACAGCCAA...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR GCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCAAAACTCCATCAGCATaGCTGGCATTTCTGGATACA +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFKTPSA*LAFLDT
Trigger: TGTATCCAGAAATGCCAGGCATGCTGATGGAGTTTT...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGCTCCATCAGCATGCCTaGCATTTCTGGATACATCAT +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGLHQHA*HFWIHH
Trigger: ATGATGTATCCAGAAATGCCAGGCATGCTGATGGAG...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTAGTGAAGACTGCATCTaGGTGACGTTTGACTGGTAC +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLSEDCI*VTFDWY
Trigger: GTACCAGTCAAACGTCACTCAGATGCAGTCTTCACT...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTGGGTATAGTTGTCAGTaGAGACTGCATCTGAGTGAC +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSAGYSCQ*RLHLSD
Trigger: GTCACTCAGATGCAGTCTTCACTGACAACTATACCC...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCAGAAGGAAGCTCATATaGCCAAAGCAATATTCTGAG +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFRRKLI*PKQYSE
Trigger: CTCAGAATATTGCTTTGGTCATATGAGCTTCCTTCT...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGGTACAGGGTCTTCTaGGATGTTACTGCTAACACG +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLWYRVF*DVTANT
Trigger: CGTGTTAGCAGTAACATCTCAGAAGACCCTGTACCA...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367244.8
ENST00000431366.1
CDS-3UTR GCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGAAAACTCCATCAGCATaGCTGGCATTTCTGGATACA +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGKTPSA*LAFLDT
Trigger: TGTATCCAGAAATGCCAGGCATGCTGATGGAGTTTT...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CCA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCACTCAAGGTACTTTTTaGCAGAAAGTTGACCCAAGA +
Preference number: 4 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFTQGTF*QKVDPR
Trigger: TCTTGGGTCAACTTTCTGCCAAAAAGTACCTTGAGT...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTCTCCATCAGCATGCCTaGCATTTCTGGATACATCAT +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSALHQHA*HFWIHH
Trigger: ATGATGTATCCAGAAATGCCAGGCATGCTGATGGAG...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGACTCAAGGTACTTTTTaGCAGAAAGTTGACCCAAGA +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGTQGTF*QKVDPR
Trigger: TCTTGGGTCAACTTTCTGCCAAAAAGTACCTTGAGT...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGTCTGTTCTACTCTCCTaGATAGTTAAGTACACTCTA +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGSVLLS*IVKYTL
Trigger: TAGAGTGTACTTAACTATTCAGGAGAGTAGAACAGA...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR GCA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGAGTTGTCATCAGCTTTaGTCCAAAGGTCTTTTTCAT +
Preference number: 4 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGSCHQL*SKGLFH
Trigger: ATGAAAAAGACCTTTGGAGCAAAGCTGATGACAACT...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTCATGCCTGGCATTTCTaGATACATCATAATAGGGTG +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSAHAWHF*IHHNRV
Trigger: CACCCTATTATGATGTATCCAGAAATGCCAGGCATG...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTAGAAGGAAGCTCATATaGCCAAAGCAATATTCTGAG +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSARRKLI*PKQYSE
Trigger: CTCAGAATATTGCTTTGGTCATATGAGCTTCCTTCT...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTACTCAAGGTACTTTTTaGCAGAAAGTTGACCCAAGA +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLTQGTF*QKVDPR
Trigger: TCTTGGGTCAACTTTCTGCCAAAAAGTACCTTGAGT...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTCCTTCAAGAATTCACTaGGAAGTTGTCATCAGCTTT +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLPSRIH*EVVISF
Trigger: AAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR TCA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTCTGTTCTACTCTCCTaGATAGTTAAGTACACTCTA +
Preference number: 4 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSASVLLS*IVKYTL
Trigger: TAGAGTGTACTTAACTATTCAGGAGAGTAGAACAGA...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR GCA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTAGTTGTCATCAGCTTTaGTCCAAAGGTCTTTTTCAT +
Preference number: 4 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLSCHQL*SKGLFH
Trigger: ATGAAAAAGACCTTTGGAGCAAAGCTGATGACAACT...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS TCA 90 bp CCTGAGAGCAGAAGGTGCCCTGTAAAGAGGCCATGCCGAAGTCTGTaGGAAGAGCACACTGAGAAGAGTCAGGAGCACAAGGAGCTGGGC +
Preference number: 5 (lower is better)
Translates to: PESRRCPVKRPCRSL*EEHTEKSQEHKELG
Trigger: GCCCAGCTCCTTGTGCTCCTGACTCTTCTCAGTGTGCTCTTCTCACAGACTTCGGCATGGCCTCTTTACAGGGCACCTTCTGCTCTCAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS TCA 90 bp GTGCCCTGTAAAGAGGCCATGCCGAAGTCTGTGAGAAGAGCACACTaGGAAGAGTCAGGAGCACAAGGAGCTGGGCCTTATTTCTGGTGT +
Preference number: 5 (lower is better)
Translates to: VPCKEAMPKSVRRAH*EESGAQGAGPYFWC
Trigger: ACACCAGAAATAAGGCCCAGCTCCTTGTGCTCCTGACTCTTCTCAGTGTGCTCTTCTCACAGACTTCGGCATGGCCTCTTTACAGGGCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR CAA 90 bp CCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTGCTCCAAAGGTCTTTTTCATCAGGAGAGAGCCTTaGGTGATTAGCAATCCAAAT +
Preference number: 5 (lower is better)
Translates to: PSRIHWEVVISFAPKVFFIRREP*VISNPN
Trigger: ATTTGGATTGCTAATCACCAAAGGCTCTCTCCTGAT...GAAAAAGACCTTTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTCTTGAAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CAA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTCTTGATCAGGTTCATTaGCTCCCTCAAAGGGTATTC +
Preference number: 5 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSALDQVH*LPQRVF
Trigger: GAATACCCTTTGAGGGAGCAAATGAACCTGATCAAG...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR CAA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTCTTGATCAGGTTCATTaGCTCCCTCAAAGGGTATTC +
Preference number: 5 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLLDQVH*LPQRVF
Trigger: GAATACCCTTTGAGGGAGCAAATGAACCTGATCAAG...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS-3UTR CAA 90 bp TTTTACACATACTTAACACAAGCAGAAAGGGAAGTTTCAGTGTCAGAAGCAGGGAAGTTGTCATCAGCTTaGCTCCAAAGGTCTTTTTCA +
Preference number: 5 (lower is better)
Translates to: FYTYLTQAEREVSVSEAGKLSSA*LQRSFS
Trigger: TGAAAAAGACCTTTGGAGCAAAGCTGATGACAACTT...CCCTGCTTCTGACACTGAAACTTCCCTTTCTGCTTGTGTTAAGTATGTGTAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CAA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTGAATTCACTGGGAAGTaGTCATCAGCTTTGCTCCAA +
Preference number: 5 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLEFTGK*SSALLQ
Trigger: TTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTC...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CAA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTGAATTCACTGGGAAGTaGTCATCAGCTTTGCTCCAA +
Preference number: 5 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSAEFTGK*SSALLQ
Trigger: TTGGAGCAAAGCTGATGACAACTTCCCAGTGAATTC...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CAA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTATCAGGAGAGAGCCTTaGGTGATTAGCAATCCAAAT +
Preference number: 5 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLIRREP*VISNPN
Trigger: ATTTGGATTGCTAATCACCAAAGGCTCTCTCCTGAT...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CAA 90 bp ATTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTTCTTTACAGCCATTaGTTTTCTAAGGCGGGTATA +
Preference number: 5 (lower is better)
Translates to: IMLRIIFLQEFTGKLSSAFLYSH*FSKAGI
Trigger: TATACCCGCCTTAGAAAACAAATGGCTGTAAAGAAA...AGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAAT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS-3UTR CAA 90 bp TTATGTTGCGTATCATTTTCCTTCAAGAATTCACTGGGAAGTTGTCATCAGCTTTTTCTTTACAGCCATTaGTTTTCTAAGGCGGGTATA +
Preference number: 5 (lower is better)
Translates to: LCCVSFSFKNSLGSCHQLFLYSH*FSKAGI
Trigger: TATACCCGCCTTAGAAAACAAATGGCTGTAAAGAAA...AAGCTGATGACAACTTCCCAGTGAATTCTTGAAGGAAAATGATACGCAACATAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000367243.7
ENST00000367244.8
ENST00000431366.1
CDS CCA 72 bp TCCACCAGTTCTCTGCCCTTAGCAATGGCTAAGGGTTaGCTGTTACTGCCTGCTGGTGCTTCTCACTCTACC +
Preference number: 6 (lower is better)
Translates to: STSSLPLAMAKG*LLLPAGASHST
Trigger: GGTAGAGTGAGAAGCACCAGCAGGCAGTAACAGCCAACCCTTAGCCATTGCTAAGGGCAGAGAACTGGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS TCA 72 bp AAAGAGGCCATGCCGAAGTCTGTGAGAAGAGCACACTaGGAAGAGTCAGGAGCACAAGGAGCTGGGCCTTAT +
Preference number: 6 (lower is better)
Translates to: KEAMPKSVRRAH*EESGAQGAGPY
Trigger: ATAAGGCCCAGCTCCTTGTGCTCCTGACTCTTCTCAGTGTGCTCTTCTCACAGACTTCGGCATGGCCTCTTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS TCA 72 bp AGAAGGTGCCCTGTAAAGAGGCCATGCCGAAGTCTGTaGGAAGAGCACACTGAGAAGAGTCAGGAGCACAAG +
Preference number: 6 (lower is better)
Translates to: RRCPVKRPCRSL*EEHTEKSQEHK
Trigger: CTTGTGCTCCTGACTCTTCTCAGTGTGCTCTTCTCACAGACTTCGGCATGGCCTCTTTACAGGGCACCTTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8
CDS CCA 72 bp AAGAGCACACTGAGAAGAGTCAGGAGCACAAGGAGCTaGGCCTTATTTCTGGTGTCCATTTCTGTGCCTCTC +
Preference number: 6 (lower is better)
Translates to: KSTLRRVRSTRS*ALFLVSISVPL
Trigger: GAGAGGCACAGAAATGGACACCAGAAATAAGGCCCAGCTCCTTGTGCTCCTGACTCTTCTCAGTGTGCTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000367243.7
ENST00000367244.8