RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VHL (Homo sapiens)

Ensembl gene IDs: ENSG00000134086

Ensembl transcript IDs: ENST00000256474.3, ENST00000345392.2, ENST00000477538.1

Found 102 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CACTGGGGTCTCAAAGAGGAGAAAGACTTGTCCCTGCCTCACGGATaGCTCAGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGC +
Preference number: 1 (lower is better)
Translates to: HWGLKEEKDLSLPHG*LSLPKAGGRQVTNR
Trigger: GCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACTGAGGCATCCGTGAGGCAGGGACAAGTCTTTCTCCTCTTTGAGACCCCAGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR TCA 90 bp CACTTTCTAACAAAGTGTCCCCTGGTTTGTTCCTCTGACAAACCCTaGCTGAAGGCTCATGATGTGCAGGCACTGGGGTCTCAAAGAGGA +
Preference number: 1 (lower is better)
Translates to: HFLTKCPLVCSSDKP*LKAHDVQALGSQRG
Trigger: TCCTCTTTGAGACCCCAGTGCCTGCACATCATGAGCCTTCAGTCAGGGTTTGTCAGAGGAACAAACCAGGGGACACTTTGTTAGAAAGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR CCA 90 bp CCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATaGATGTATTATACATCCATTAAAAGCAGATGCCAATGCCTTCTT +
Preference number: 1 (lower is better)
Translates to: PKQEADKSPTATDVE*MYYTSIKSRCQCLL
Trigger: AAGAAGGCATTGGCATCTGCTTTTAATGGATGTATAATACATCCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR CAA 90 bp AGGCTCATGATGTGCAGGCACTGGGGTCTCAAAGAGGAGAAAGACTaGTCCCTGCCTCACGGATGCCTCAGTCTTCCCAAAGCAGGAGGC +
Preference number: 2 (lower is better)
Translates to: RLMMCRHWGLKEEKD*SLPHGCLSLPKAGG
Trigger: GCCTCCTGCTTTGGGAAGACTGAGGCATCCGTGAGGCAGGGACAAGTCTTTCTCCTCTTTGAGACCCCAGTGCCTGCACATCATGAGCCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR-3UTR TCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTCTGACTGAAGGCTCATaGTGTGCAGGCACTGGGGTC +
Preference number: 2 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCLTEGS*CAGTGV
Trigger: GACCCCAGTGCCTGCACATCATGAGCCTTCAGTCAG...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR-3UTR CCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGCTTTCTTTTAAGCAATaGTGCCTATTTTACTCTGAG +
Preference number: 2 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMLSFKQ*CLFYSE
Trigger: CTCAGAGTAAAATAGGCACCATTGCTTAAAAGAAAG...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR-3UTR CCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTGCACTTCAACAAGAGTaGACCGAGAAAGTGCACGAC +
Preference number: 2 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCALQQE*TEKVHD
Trigger: GTCGTGCACTTTCTCGGTCCACTCTTGTTGAAGTGC...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR-3UTR TCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTTGCTGCAATTCCCACTaGATTACTTATACAAACCTC +
Preference number: 2 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCCCNSH*ITYTNL
Trigger: GAGGTTTGTATAAGTAATTCAGTGGGAATTGCAGCA...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR-3UTR CCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTCTTTCTTTTAAGCAATaGTGCCTATTTTACTCTGAG +
Preference number: 2 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCLSFKQ*CLFYSE
Trigger: CTCAGAGTAAAATAGGCACCATTGCTTAAAAGAAAG...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR GCA 72 bp GGCACTGGGGTCTCAAAGAGGAGAAAGACTTGTCCCTaGCTCACGGATGCCTCAGTCTTCCCAAAGCAGGAG +
Preference number: 3 (lower is better)
Translates to: GTGVSKRRKTCP*LTDASVFPKQE
Trigger: CTCCTGCTTTGGGAAGACTGAGGCATCCGTGAGGCAGGGACAAGTCTTTCTCCTCTTTGAGACCCCAGTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR TCA 72 bp GGCGGGAGCCACCATGCCAGCCGTCACTCTCATTTTTaGGCACAGGAATTGTGCCCAAAGGCTAGGATAAGG +
Preference number: 3 (lower is better)
Translates to: GGSHHASRHSHF*AQELCPKARIR
Trigger: CCTTATCCTAGCCTTTGGGCACAATTCCTGTGCTCAAAAATGAGAGTGACGGCTGGCATGGTGGCTCCCGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR CCA 72 bp AGGCTACTCCATGAATCCATTGGTAGGACCAGAGGCTaGAGGTGGAAGTGCCACCTGGTCCTGCCTGATAAA +
Preference number: 3 (lower is better)
Translates to: RLLHESIGRTRG*RWKCHLVLPDK
Trigger: TTTATCAGGCAGGACCAGGTGGCACTTCCACCTCCAGCCTCTGGTCCTACCAATGGATTCATGGAGTAGCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR TCA 72 bp ACAAAGTGTCCCCTGGTTTGTTCCTCTGACAAACCCTaGCTGAAGGCTCATGATGTGCAGGCACTGGGGTCT +
Preference number: 3 (lower is better)
Translates to: TKCPLVCSSDKP*LKAHDVQALGS
Trigger: AGACCCCAGTGCCTGCACATCATGAGCCTTCAGTCAGGGTTTGTCAGAGGAACAAACCAGGGGACACTTTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGGGATGCGGCGGCCCGTaGCAGGCGGCAGCGTTGGGT +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWGCGGP*QAAALG
Trigger: ACCCAACGCTGCCGCCTGGCACGGGCCGCCGCATCC...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGGCCAGGCGGCAGCGTTaGGTAGGGCTGCGGCTCGCC +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWARRQR*VGLRLA
Trigger: GGCGAGCCGCAGCCCTACCCAACGCTGCCGCCTGGC...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGCTCGGTAGCTGTGGATaGGGCGGCCCGTGCCAGGCG +
Preference number: 4 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMLGSCG*GGPCQA
Trigger: CGCCTGGCACGGGCCGCCGCATCCACAGCTACCGAG...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGGCTGGAGGTGGAAGTaGCACCTGGTCCTGCCTGAT +
Preference number: 4 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMGWRWK*HLVLPD
Trigger: ATCAGGCAGGACCAGGTGGCACTTCCACCTCCAGCC...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTAGCCAGGCGGCAGCGTTaGGTAGGGCTGCGGCTCGCC +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALARRQR*VGLRLA
Trigger: GGCGAGCCGCAGCCCTACCCAACGCTGCCGCCTGGC...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGCTGACTGAAGGCTCATaGTGTGCAGGCACTGGGGTC +
Preference number: 4 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMLTEGS*CAGTGV
Trigger: GACCCCAGTGCCTGCACATCATGAGCCTTCAGTCAG...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGTCCGTTGATGTGCAATaGGCTCCTGTGTCAGCCGCT +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWSVDVQ*APVSAA
Trigger: AGCGGCTGACACAGGAGCGCATTGCACATCAACGGA...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGAGGCTCCGGACAACCTaGAGGCATCGCTCTTTCAGA +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWRLRTT*RHRSFR
Trigger: TCTGAAAGAGCGATGCCTCCAGGTTGTCCGGAGCCT...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
3UTR CAA 72 bp ATGTGCAGGCACTGGGGTCTCAAAGAGGAGAAAGACTaGTCCCTGCCTCACGGATGCCTCAGTCTTCCCAAA +
Preference number: 4 (lower is better)
Translates to: MCRHWGLKEEKD*SLPHGCLSLPK
Trigger: TTTGGGAAGACTGAGGCATCCGTGAGGCAGGGACAAGTCTTTCTCCTCTTTGAGACCCCAGTGCCTGCACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGCAATCTCCCATCCGTTaGTGTGCAATGCGCTCCTGT +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWQSPIR*CAMRSC
Trigger: ACAGGAGCGCATTGCACATCAACGGATGGGAGATTG...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGTCCCATCCGTTGATGTaGAATGCGCTCCTGTGTCAG +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWSHPLM*NALLCQ
Trigger: CTGACACAGGAGCGCATTGCACATCAACGGATGGGA...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGCTGACAAACCCTGACTaGAGGCTCATGATGTGCAGG +
Preference number: 4 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMLTNPD*RLMMCR
Trigger: CCTGCACATCATGAGCCTTCAGTCAGGGTTTGTCAG...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTGGATGCGGCGGCCCGTaGCAGGCGGCAGCGTTGGGT +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCGCGGP*QAAALG
Trigger: ACCCAACGCTGCCGCCTGGCACGGGCCGCCGCATCC...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGTCCCATCCGTTGATGTaGAATGCGCTCCTGTGTCAG +
Preference number: 4 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMSHPLM*NALLCQ
Trigger: CTGACACAGGAGCGCATTGCACATCAACGGATGGGA...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGCGATATCAGCTCACTaGAATCTTCGCCTCCTGGGT +
Preference number: 4 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMAISAH*NLRLLG
Trigger: ACCCAGGAGGCGAAGATTGCAGTGAGCTGATATCGC...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR CCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGGCACTTCAACAAGAGTaGACCGAGAAAGTGCACGAC +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWALQQE*TEKVHD
Trigger: GTCGTGCACTTTCTCGGTCCACTCTTGTTGAAGTGC...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTAGCTCGCCGTCGAAGTTaGGCCATACGGGCAGCACGA +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALARRRS*AIRAAR
Trigger: TCGTGCTGCCCGTATGGCTCAACTTCGACGGCGAGC...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGTGTAATTCTCAGGCTTaGCTAGGCTCCGGACAACCT +
Preference number: 4 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMCNSQA*LGSGQP
Trigger: AGGTTGTCCGGAGCCTAGTCAAGCCTGAGAATTACA...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCGTACTCTTCGACGCCTaGCTCCTCCGCGCCTACCTC +
Preference number: 4 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSVLFDA*LLRAYL
Trigger: GAGGTAGGCGCGGAGGAGGCAGGCGTCGAAGAGTAC...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGGTACTCTTCGACGCCTaGCTCCTCCGCGCCTACCTC +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQVLFDA*LLRAYL
Trigger: GAGGTAGGCGCGGAGGAGGCAGGCGTCGAAGAGTAC...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGGCTCCTGACCTCAGGTaGTCCATCCGCCTTGGTCTC +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQAPDLR*SIRLGL
Trigger: GAGACCAAGGCGGATGGATCACCTGAGGTCAGGAGC...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR GCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGGGCTGGAGGTGGAAGTaGCACCTGGTCCTGCCTGAT +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQGWRWK*HLVLPD
Trigger: ATCAGGCAGGACCAGGTGGCACTTCCACCTCCAGCC...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGAAACCAACCAAAATCTaGCCTAAAAAGGCTGGAAGG +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWKPTKI*PKKAGR
Trigger: CCTTCCAGCCTTTTTAGGGCAGATTTTGGTTGGTTT...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTATTGCAGAAGATGACCTaGGAGGGCTCGCGCGAGTTC +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALLQKMT*EGSREF
Trigger: GAACTCGCGCGAGCCCTCCCAGGTCATCTTCTGCAA...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTTGCAGAAGATGACCTaGGAGGGCTCGCGCGAGTTC +
Preference number: 4 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSLQKMT*EGSREF
Trigger: GAACTCGCGCGAGCCCTCCCAGGTCATCTTCTGCAA...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGTCTTTCTGCACATTTaGGTGGTCTTCCAGATCTTC +
Preference number: 4 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMVFLHI*VVFQIF
Trigger: GAAGATCTGGAAGACCACCCAAATGTGCAGAAAGAC...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTAAATTGGCCAGCGTGGTaGCAGGCGCCTGTAATCCCA +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALNWPAW*QAPVIP
Trigger: TGGGATTACAGGCGCCTGCCACCACGCTGGCCAATT...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTGCTCGCCGTCGAAGTTaGGCCATACGGGCAGCACGA +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCARRRS*AIRAAR
Trigger: TCGTGCTGCCCGTATGGCTCAACTTCGACGGCGAGC...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGCTGACTGAAGGCTCATaGTGTGCAGGCACTGGGGTC +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQLTEGS*CAGTGV
Trigger: GACCCCAGTGCCTGCACATCATGAGCCTTCAGTCAG...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTACTCAGGAGGATTACGTaGACCCAGGAGGCAGAGGTT +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALLRRIT*TQEAEV
Trigger: AACCTCTGCCTCCTGGGTTCACGTAATCCTCCTGAG...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTAGCCAGGAGAATCACTTaGACTCGGGAGGCAGAGCTT +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALARRIT*TREAEL
Trigger: AAGCTCTGCCTCCCGAGTTCAAGTGATTCTCCTGGC...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR TCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGGTGTCCCTGCATCTCTaGAGAGCCAAAGGTGACCTC +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQVSLHL*RAKGDL
Trigger: GAGGTCACCTTTGGCTCTTCAGAGATGCAGGGACAC...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR TCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTAAGCCCAGGCTCATCTTaGAGTTCTGGGCTCAAGCAA +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALSPGSS*SSGLKQ
Trigger: TTGCTTGAGCCCAGAACTTCAAGATGAGCCTGGGCT...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCAGCCCAGGCTCATCTTaGAGTTCTGGGCTCAAGCAA +
Preference number: 4 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSSPGSS*SSGLKQ
Trigger: TTGCTTGAGCCCAGAACTTCAAGATGAGCCTGGGCT...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGTTCTCGTATTTTCTGTaGGGATGGCAAGTTACAAAA +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWFSYFL*GWQVTK
Trigger: TTTTGTAACTTGCCATCCGCACAGAAAATACGAGAA...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGTCGCCCAGGTTAGAGTaGAGTGGCACCATCTCAGCT +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQSPRLE*SGTISA
Trigger: AGCTGAGATGGTGCCACTGCACTCTAACCTGGGCGA...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR CCA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCGGCTTTCCAAAGTACTaGGATTACAGGCGGGAGCCA +
Preference number: 4 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSGFPKY*DYRREP
Trigger: TGGCTCCCGCCTGTAATCCCAGTACTTTGGAAAGCC...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGCTGACAAACCCTGACTaGAGGCTCATGATGTGCAGG +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQLTNPD*RLMMCR
Trigger: CCTGCACATCATGAGCCTTCAGTCAGGGTTTGTCAG...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGGAATTAAAGATGCATaGCAAGAAATACCCACAAAC +
Preference number: 4 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMGIKDA*QEIPTN
Trigger: GTTTGTGGGTATTTCTTGGCATGCATCTTTAATTCC...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGCTTTCTTTTAAGCAATaGTGCCTATTTTACTCTGAG +
Preference number: 4 (lower is better)
Translates to: VFPKQEADKSPTATDVEWLSFKQ*CLFYSE
Trigger: CTCAGAGTAAAATAGGCACCATTGCTTAAAAGAAAG...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTAGCACTTCAACAAGAGTaGACCGAGAAAGTGCACGAC +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALALQQE*TEKVHD
Trigger: GTCGTGCACTTTCTCGGTCCACTCTTGTTGAAGTGC...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTAGGCTCTCGAGTAGCTaGGACTACAGGCGCTCACCA +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCRLSSS*DYRRSP
Trigger: TGGTGAGCGCCTGTAGTCCCAGCTACTCGAGAGCCT...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR TCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGTGTAATTCTCAGGCTTaGCTAGGCTCCGGACAACCT +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQCNSQA*LGSGQP
Trigger: AGGTTGTCCGGAGCCTAGTCAAGCCTGAGAATTACA...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTCTCAGGAGGATTACGTaGACCCAGGAGGCAGAGGTT +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCLRRIT*TQEAEV
Trigger: AACCTCTGCCTCCTGGGTTCACGTAATCCTCCTGAG...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCGCTGGAGTACAATGGTaGGATATCAGCTCACTGCAA +
Preference number: 4 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSAGVQW*DISSLQ
Trigger: TTGCAGTGAGCTGATATCGCACCATTGTACTCCAGC...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR CCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTAGGCTCCGGACAACCTaGAGGCATCGCTCTTTCAGA +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCRLRTT*RHRSFR
Trigger: TCTGAAAGAGCGATGCCTCCAGGTTGTCCGGAGCCT...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCATTCCTAAACTCCAATaGTCTTCTCACCTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSIPKLQ*SSHLSL
Trigger: CAGGCTGAGGTGAGAAGATCATTGGAGTTTAGGAAT...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCATACTCATGGCTCACTaGAGCCTCCAATTCCTAAAC +
Preference number: 4 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSILMAH*SLQFLN
Trigger: GTTTAGGAATTGGAGGCTGCAGTGAGCCATGAGTAT...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTGGCTTTCCAAAGTACTaGGATTACAGGCGGGAGCCA +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCGFPKY*DYRREP
Trigger: TGGCTCCCGCCTGTAATCCCAGTACTTTGGAAAGCC...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTGTGATCCATCCGCCTTaGTCTCCCAAAATGCTGGGA +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCVIHPP*SPKMLG
Trigger: TCCCAGCATTTTGGGAGACCAAGGCGGATGGATCAC...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR TCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGATTCCTAAACTCCAATaGTCTTCTCACCTCAGCCTG +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQIPKLQ*SSHLSL
Trigger: CAGGCTGAGGTGAGAAGATCATTGGAGTTTAGGAAT...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGATACTCATGGCTCACTaGAGCCTCCAATTCCTAAAC +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQILMAH*SLQFLN
Trigger: GTTTAGGAATTGGAGGCTGCAGTGAGCCATGAGTAT...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTCAGGCTGGAGTACAATaGTGCGATATCAGCTCACTG +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCQAGVQ*CDISSL
Trigger: CAGTGAGCTGATATCGCACCATTGTACTCCAGCCTG...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR TCA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGCTGCAATTCCCACTaGATTACTTATACAAACCTC +
Preference number: 4 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSCCNSH*ITYTNL
Trigger: GAGGTTTGTATAAGTAATTCAGTGGGAATTGCAGCA...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTATATTTTAAGTGGAGATaGGGTTTCACCATGTTAGCC +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALYFKWR*GFTMLA
Trigger: GGCTAACATGGTGAAACCTCATCTCCACTTAAAATA...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR TCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGACATTTAGAAAACTATaGAACAGTCCAGGCTACTCC +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQTFRKL*NSPGYS
Trigger: GGAGTAGCCTGGACTGTTTCATAGTTTTCTAAATGT...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGTTCTCGTATTTTCTGTaGGGATGGCAAGTTACAAAA +
Preference number: 4 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQFSYFL*GWQVTK
Trigger: TTTTGTAACTTGCCATCCGCACAGAAAATACGAGAA...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTAGCTACGGATGTAGAATaGATGTATTATACATCCATT +
Preference number: 4 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALATDVE*MYYTSI
Trigger: AATGGATGTATAATACATCCATTCTACATCCGTAGC...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR TCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTACATTTAGAAAACTATaGAACAGTCCAGGCTACTCC +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCTFRKL*NSPGYS
Trigger: GGAGTAGCCTGGACTGTTTCATAGTTTTCTAAATGT...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR GCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTGGAATTAAAGATGCATaGCAAGAAATACCCACAAAC +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCGIKDA*QEIPTN
Trigger: GTTTGTGGGTATTTCTTGGCATGCATCTTTAATTCC...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CCA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTTTTCAGAGTATACACTaGCAGTGTGATATTGGCAAA +
Preference number: 4 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCFQSIH*QCDIGK
Trigger: TTTGCCAATATCACACTGCCAGTGTATACTCTGAAA...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS TCA 90 bp TGCCAGGCGGCAGCGTTGGGTAGGGCTGCGGCTCGCCGTCGAAGTTaGGCCATACGGGCAGCACGACGCGCGGACTGCGATTGCAGAAGA +
Preference number: 5 (lower is better)
Translates to: CQAAALGRAAARRRS*AIRAARRADCDCRR
Trigger: TCTTCTGCAATCGCAGTCCGCGCGTCGTGCTGCCCGTATGGCTCAACTTCGACGGCGAGCCGCAGCCCTACCCAACGCTGCCGCCTGGCA
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGGCTCGCCGTCGAAGTaGAGCCATACGGGCAGCACG +
Preference number: 5 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMGSPSK*SHTGST
Trigger: CGTGCTGCCCGTATGGCTCAACTTCGACGGCGAGCC...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTATGCCAGGCGGCAGCGTaGGGTAGGGCTGCGGCTCGC +
Preference number: 5 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALCQAAA*GRAAAR
Trigger: GCGAGCCGCAGCCCTACCCAACGCTGCCGCCTGGCA...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGACTGGCAGTGTGATATaGGCAAAAATAGGCTGTCCG +
Preference number: 5 (lower is better)
Translates to: VFPKQEADKSPTATDVEWTGSVI*AKIGCP
Trigger: CGGACAGCCTATTTTTGCCAATATCACACTGCCAGT...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR CAA 90 bp GTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGGGGTCTTTCTGCACATTaGGGTGGTCTTCCAGATCTT +
Preference number: 5 (lower is better)
Translates to: VFPKQEADKSPTATDVEWGLSAH*GGLPDL
Trigger: AAGATCTGGAAGACCACCCAAATGTGCAGAAAGACC...CCATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGCTAAAAGTACAAAAATaGGCCAGCGTGGTGGCAGGC +
Preference number: 5 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMLKVQK*ASVVAG
Trigger: GCCTGCCACCACGCTGGCCAATTTTTGTACTTTTAG...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp AGTCTTCCCAAAGCAGGAGGCAGACAAGTCACCAACCGCTACGGATGTAGAATGTTTGAGACAAGAGTATaGCTCTGTCACACAGGCTGG +
Preference number: 5 (lower is better)
Translates to: SLPKAGGRQVTNRYGCRMFETRV*LCHTGW
Trigger: CCAGCCTGTGTGACAGAGCAATACTCTTGTCTCAAA...CATTCTACATCCGTAGCGGTTGGTGACTTGTCTGCCTCCTGCTTTGGGAAGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR CAA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGACGCGCGGACTGCGATaGCAGAAGATGACCTGGGAG +
Preference number: 5 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQTRGLR*QKMTWE
Trigger: CTCCCAGGTCATCTTCTGCAATCGCAGTCCGCGCGT...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTGGCTCGCCGTCGAAGTaGAGCCATACGGGCAGCACG +
Preference number: 5 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCGSPSK*SHTGST
Trigger: CGTGCTGCCCGTATGGCTCAACTTCGACGGCGAGCC...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTACCTGAGGTCAGGAGTTaGAAACCAGCCTGGCCAACA +
Preference number: 5 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALPEVRS*KPAWPT
Trigger: TGTTGGCCAGGCTGGTTTCAAACTCCTGACCTCAGG...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCCCTGAGGTCAGGAGTTaGAAACCAGCCTGGCCAACA +
Preference number: 5 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSPEVRS*KPAWPT
Trigger: TGTTGGCCAGGCTGGTTTCAAACTCCTGACCTCAGG...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTACGCGCGGACTGCGATaGCAGAAGATGACCTGGGAG +
Preference number: 5 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCTRGLR*QKMTWE
Trigger: CTCCCAGGTCATCTTCTGCAATCGCAGTCCGCGCGT...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTCAATCTCCCATCCGTaGATGTGCAATGCGCTCCTG +
Preference number: 5 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSSISHP*MCNALL
Trigger: CAGGAGCGCATTGCACATCAACGGATGGGAGATTGA...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCCTAAAAGTACAAAAATaGGCCAGCGTGGTGGCAGGC +
Preference number: 5 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSLKVQK*ASVVAG
Trigger: GCCTGCCACCACGCTGGCCAATTTTTGTACTTTTAG...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp AAGGAAGGAACCAGTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTACTCCATGAATCCATaGGTAGGACCAGAGGCTGGA +
Preference number: 5 (lower is better)
Translates to: KEGTSPVSRSRLISTIKSYSMNP*VGPEAG
Trigger: TCCAGCCTCTGGTCCTACCAATGGATTCATGGAGTA...GCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGACTGGTTCCTTCCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTGGTGATCCATCCGCCTaGGTCTCCCAAAATGCTGGG +
Preference number: 5 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCGDPSA*VSQNAG
Trigger: CCCAGCATTTTGGGAGACCAAGGCGGATGGATCACC...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000256474.3
CDS-3UTR CAA 90 bp GCAAAAATGCCACCACCTTCTCCTGATAAATACTTCTCTAATGGGCAGGCATTAAGCAATCCTCTTACCTaGGCTTTCCAAAGTACTGGG +
Preference number: 5 (lower is better)
Translates to: AKMPPPSPDKYFSNGQALSNPLT*AFQSTG
Trigger: CCCAGTACTTTGGAAAGCCAAGGTAAGAGGATTGCT...TAATGCCTGCCCATTAGAGAAGTATTTATCAGGAGAAGGTGGTGGCATTTTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp GTCCTGTATCTAGATCAAGACTCATCAGTACCATCAAAAGCTGAGATGAAACAGGGTCTTTCTGCACATTaGGGTGGTCTTCCAGATCTT +
Preference number: 5 (lower is better)
Translates to: VLYLDQDSSVPSKAEMKQGLSAH*GGLPDL
Trigger: AAGATCTGGAAGACCACCCAAATGTGCAGAAAGACC...CTGTTTCATCTCAGCTTTTGATGGTACTGATGAGTCTTGATCTAGATACAGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTTCAATCTCCCATCCGTaGATGTGCAATGCGCTCCTG +
Preference number: 5 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCSISHP*MCNALL
Trigger: CAGGAGCGCATTGCACATCAACGGATGGGAGATTGA...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS-3UTR CAA 90 bp TCTCGTATTTTCTGTGCGGATGGCAAGTTACAAAAATGCTATTATCACAACTGTTACTCCATGAATCCATaGGTAGGACCAGAGGCTGGA +
Preference number: 5 (lower is better)
Translates to: SRIFCADGKLQKCYYHNCYSMNP*VGPEAG
Trigger: TCCAGCCTCTGGTCCTACCAATGGATTCATGGAGTA...ACAGTTGTGATAATAGCATTTTTGTAACTTGCCATCCGCACAGAAAATACGAGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS TCA 72 bp GCAGCGTTGGGTAGGGCTGCGGCTCGCCGTCGAAGTTaGGCCATACGGGCAGCACGACGCGCGGACTGCGAT +
Preference number: 6 (lower is better)
Translates to: AALGRAAARRRS*AIRAARRADCD
Trigger: ATCGCAGTCCGCGCGTCGTGCTGCCCGTATGGCTCAACTTCGACGGCGAGCCGCAGCCCTACCCAACGCTGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS CAA 90 bp CCGTCGAAGTTGAGCCATACGGGCAGCACGACGCGCGGACTGCGATaGCAGAAGATGACCTGGGAGGGCTCGCGCGAGTTCACCGAGCGC +
Preference number: 6 (lower is better)
Translates to: PSKLSHTGSTTRGLR*QKMTWEGSREFTER
Trigger: GCGCTCGGTGAACTCGCGCGAGCCCTCCCAGGTCATCTTCTGCAATCGCAGTCCGCGCGTCGTGCTGCCCGTATGGCTCAACTTCGACGG
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS CAA 72 bp TTGAGCCATACGGGCAGCACGACGCGCGGACTGCGATaGCAGAAGATGACCTGGGAGGGCTCGCGCGAGTTC +
Preference number: 6 (lower is better)
Translates to: LSHTGSTTRGLR*QKMTWEGSREF
Trigger: GAACTCGCGCGAGCCCTCCCAGGTCATCTTCTGCAATCGCAGTCCGCGCGTCGTGCTGCCCGTATGGCTCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000256474.3
ENST00000345392.2
CDS CAA 90 bp GGTCGGCTCTTCCGGCGCCAACATGACCCTGGCTTGTTCCTGTCTTaGCATCTGTCAGTCTCCCCAGGAGGAATGTGTTCTCCACGAGGG +
Preference number: 6 (lower is better)
Translates to: GRLFRRQHDPGLFLS*HLSVSPGGMCSPRG
Trigger: CCCTCGTGGAGAACACATTCCTCCTGGGGAGACTGACAGATGCAAAGACAGGAACAAGCCAGGGTCATGTTGGCGCCGGAAGAGCCGACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477538.1
CDS CCA 72 bp AATGTGTTCTCCACGAGGGCAGGGACTACGCAGAACTaGCCCACTGGAGTCATGAGGACTGAACAGATGGGG +
Preference number: 6 (lower is better)
Translates to: NVFSTRAGTTQN*PTGVMRTEQMG
Trigger: CCCCATCTGTTCAGTCCTCATGACTCCAGTGGGCCAGTTCTGCGTAGTCCCTGCCCTCGTGGAGAACACATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000477538.1
CDS GCA 72 bp TCCGGCGCCAACATGACCCTGGCTTGTTCCTGTCTTTaGATCTGTCAGTCTCCCCAGGAGGAATGTGTTCTC +
Preference number: 6 (lower is better)
Translates to: SGANMTLACSCL*ICQSPQEECVL
Trigger: GAGAACACATTCCTCCTGGGGAGACTGACAGATGCAAAGACAGGAACAAGCCAGGGTCATGTTGGCGCCGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477538.1
CDS CAA 72 bp TTCCGGCGCCAACATGACCCTGGCTTGTTCCTGTCTTaGCATCTGTCAGTCTCCCCAGGAGGAATGTGTTCT +
Preference number: 6 (lower is better)
Translates to: FRRQHDPGLFLS*HLSVSPGGMCS
Trigger: AGAACACATTCCTCCTGGGGAGACTGACAGATGCAAAGACAGGAACAAGCCAGGGTCATGTTGGCGCCGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000477538.1
CDS TCA 72 bp GACTACGCAGAACTGGCCCACTGGAGTCATGAGGACTaGACAGATGGGGTGTTAAGGATGCAGCTTTTCTTT +
Preference number: 6 (lower is better)
Translates to: DYAELAHWSHED*TDGVLRMQLFF
Trigger: AAAGAAAAGCTGCATCCTTAACACCCCATCTGTTCAGTCCTCATGACTCCAGTGGGCCAGTTCTGCGTAGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000477538.1