RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for VGLL2 (Homo sapiens)

Ensembl gene IDs: ENSG00000170162

Ensembl transcript IDs: ENST00000326274.6, ENST00000352536.7

Found 166 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGGTGATGTATTTCTGGAGTTTTCAACAGTTGTCTAACAACAGCTaGATTTTAGTAAGACTTGGGCAGGTGGCTCCAGATAAGCCACTT +
Preference number: 1 (lower is better)
Translates to: WVMYFWSFQQLSNNS*ILVRLGQVAPDKPL
Trigger: AAGTGGCTTATCTGGAGCCACCTGCCCAAGTCTTACTAAAATGCAGCTGTTGTTAGACAACTGTTGAAAACTCCAGAAATACATCACCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR TCA 90 bp ATATCACATCACCTGACTCAGCAATCTCACCACAGATATTTCCAGTaGTTCGGCCAAAAGTCATTAAACATAACTCAGTCTTTGGATTTG +
Preference number: 1 (lower is better)
Translates to: ISHHLTQQSHHRYFQ*FGQKSLNITQSLDL
Trigger: CAAATCCAAAGACTGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGATTGCTGAGTCAGGTGATGTGATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR GCA 90 bp CATACATATATATATATAATATACCCAGTGCAATTGCAATTGTTCTaGCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAG +
Preference number: 1 (lower is better)
Translates to: HTYIYIIYPVQLQLF*QILRTATLGDVFLE
Trigger: CTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATATTATATATATATATGTATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR TCA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGGAGAGGCACAGATGCTaGGCCTCCAAGGCTGGTCAG +
Preference number: 2 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVERHRC*ASKAGQ
Trigger: CTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTC...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR TCA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACTCCTCATCCACGGAGTaGGAGGCACAGATGCTGAGC +
Preference number: 2 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYSSSTE*EAQMLS
Trigger: GCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGA...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCCTGAGCCTCCAAGGCTaGTCAGAAGGGAAGGGGAAG +
Preference number: 2 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPLSLQG*SEGKGK
Trigger: CTTCCCCTTCCCTTCTGACCAGCCTTGGAGGCTCAG...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR TCA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACATCCTCATCCACGGAGTaGGAGGCACAGATGCTGAGC +
Preference number: 2 (lower is better)
Translates to: CQILRTATLGDVFLEFSTSSSTE*EAQMLS
Trigger: GCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGA...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGACTGAGCCTCCAAGGCTaGTCAGAAGGGAAGGGGAAG +
Preference number: 2 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRLSLQG*SEGKGK
Trigger: CTTCCCCTTCCCTTCTGACCAGCCTTGGAGGCTCAG...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCTCCATGGAGACAGTTaGGGTCTCTCCTTGCTTTTT +
Preference number: 2 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFLHGDS*GLSLLF
Trigger: AAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAG...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR GCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCTCAGTCTTTGGATTTaGTCTTTCAGCAGCAGGACT +
Preference number: 2 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFLSLWI*SFSSRT
Trigger: AGTCCTGCTGCTGAAAGAGCAAATCCAAAGACTGAG...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CCA 90 bp ATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCCCCTGTCCCAACACTAAAGTGTAGTTGTGGTTTTTaGTTTTCCCAACACACTGAG +
Preference number: 2 (lower is better)
Translates to: ITFSFAHAQTLSPVPTLKCSCGF*FSQHTE
Trigger: CTCAGTGTGTTGGGAAAACCAAAAACCACAACTACA...CTTTAGTGTTGGGACAGGGGAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR TCA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCAGAGAGGCACAGATGCTaGGCCTCCAAGGCTGGTCAG +
Preference number: 2 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSERHRC*ASKAGQ
Trigger: CTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTC...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR GCA 90 bp ATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCCCCTGTCCCAACACTAAAGTATACCCAGTGCAATTaGAATTGTTCTGCCAAATAC +
Preference number: 2 (lower is better)
Translates to: ITFSFAHAQTLSPVPTLKYTQCN*NCSAKY
Trigger: GTATTTGGCAGAACAATTGCAATTGCACTGGGTATA...CTTTAGTGTTGGGACAGGGGAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR TCA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACCACAGATATTTCCAGTaGTTCGGCCAAAAGTCATTA +
Preference number: 2 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYHRYFQ*FGQKSL
Trigger: TAATGACTTTTGGCCGAATCACTGGAAATATCTGTG...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR GCA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCCTCAGTCTTTGGATTTaGTCTTTCAGCAGCAGGACT +
Preference number: 2 (lower is better)
Translates to: SFPRSKKAYDITSPDSAILSLWI*SFSSRT
Trigger: AGTCCTGCTGCTGAAAGAGCAAATCCAAAGACTGAG...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGAGTGTATCTTTGCGTCTaGAGTGGGCATTGTAGGGAA +
Preference number: 2 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRVYLCV*SGHCRE
Trigger: TTCCCTACAATGCCCACTCCAGACGCAAAGATACAC...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR GCA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACTATACCCAGTGCAATTaGAATTGTTCTGCCAAATAC +
Preference number: 2 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYYTQCN*NCSAKY
Trigger: GTATTTGGCAGAACAATTGCAATTGCACTGGGTATA...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR GCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGAGTTGGGGTCTCTCCTTaGTTTTTACATCCAGAGGAT +
Preference number: 2 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRVGVSP*FLHPED
Trigger: ATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGATGTAGTTGTGGTTTTTaGTTTTCCCAACACACTGAG +
Preference number: 2 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRCSCGF*FSQHTE
Trigger: CTCAGTGTGTTGGGAAAACCAAAAACCACAACTACA...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR GCA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACATTGTCTAACAACAGCTaGATTTTAGTAAGACTTGGG +
Preference number: 2 (lower is better)
Translates to: CQILRTATLGDVFLEFSTLSNNS*ILVRLG
Trigger: CCCAAGTCTTACTAAAATGCAGCTGTTGTTAGACAA...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CAA 90 bp ATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCCCCTGTCCCAACACTAAAGACTCAGTCTTTGGATTaGCTCTTTCAGCAGCAGGAC +
Preference number: 3 (lower is better)
Translates to: ITFSFAHAQTLSPVPTLKTQSLD*LFQQQD
Trigger: GTCCTGCTGCTGAAAGAGCAAATCCAAAGACTGAGT...CTTTAGTGTTGGGACAGGGGAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CAA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGCTGAGAACTGCCACCTaGGGTGATGTATTTCTGGAG +
Preference number: 3 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVLRTAT*GDVFLE
Trigger: CTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAG...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CAA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACACTCCAGATAAGCCACTaGCCACTCACATTCAGGCTG +
Preference number: 3 (lower is better)
Translates to: CQILRTATLGDVFLEFSTLQISH*PLTFRL
Trigger: CAGCCTGAATGTGAGTGGCAAGTGGCTTATCTGGAG...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CAA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCACTCAGTCTTTGGATTaGCTCTTTCAGCAGCAGGAC +
Preference number: 3 (lower is better)
Translates to: SFPRSKKAYDITSPDSAITQSLD*LFQQQD
Trigger: GTCCTGCTGCTGAAAGAGCAAATCCAAAGACTGAGT...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CAA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACCCAGTGCAATTGCAATaGTTCTGCCAAATACTGAGA +
Preference number: 3 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYPVQLQ*FCQILR
Trigger: TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGG...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR-3UTR CAA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGATATACCCAGTGCAATaGCAATTGTTCTGCCAAATA +
Preference number: 3 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVIYPVQ*QLFCQI
Trigger: TATTTGGCAGAACAATTGCAATTGCACTGGGTATAT...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR TCA 72 bp TATACCCAGTGCAATTGCAATTGTTCTGCCAAATACTaGGAACTGCCACCTTGGGTGATGTATTTCTGGAGT +
Preference number: 3 (lower is better)
Translates to: YTQCNCNCSAKY*ELPPWVMYFWS
Trigger: ACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR TCA 72 bp CACCTGACTCAGCAATCTCACCACAGATATTTCCAGTaGTTCGGCCAAAAGTCATTAAACATAACTCAGTCT +
Preference number: 3 (lower is better)
Translates to: HLTQQSHHRYFQ*FGQKSLNITQS
Trigger: AGACTGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGATTGCTGAGTCAGGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR GCA 72 bp TATTTCTGGAGTTTTCAACAGTTGTCTAACAACAGCTaGATTTTAGTAAGACTTGGGCAGGTGGCTCCAGAT +
Preference number: 3 (lower is better)
Translates to: YFWSFQQLSNNS*ILVRLGQVAPD
Trigger: ATCTGGAGCCACCTGCCCAAGTCTTACTAAAATGCAGCTGTTGTTAGACAACTGTTGAAAACTCCAGAAATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp GTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGGTCAGACTGAGGCCCAGACCCTaGGCCACGTCCCCCGAGGGG +
Preference number: 4 (lower is better)
Translates to: VLIHGVRGTDAEPPRLVRLRPRP*ATSPEG
Trigger: CCCCTCGGGGGACGTGGCCCAGGGTCTGGGCCTCAG...TCTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGAC
66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR GCA 90 bp GTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGGTCAGAGGAGCTCAGGGGTGCTaGATGGGCGGCGCTTGGACC +
Preference number: 4 (lower is better)
Translates to: VLIHGVRGTDAEPPRLVRGAQGC*MGGAWT
Trigger: GGTCCAAGCGCCGCCCATGCAGCACCCCTGAGCTCC...TCTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp CCCCATGTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGAGGAGGCGGGGAAGCTaGGCTGGCTCATCGGGAAGG +
Preference number: 4 (lower is better)
Translates to: PHVLIHGVRGTDAEPPRLRRRGS*AGSSGR
Trigger: CCTTCCCGATGAGCCAGCGCAGCTTCCCCGCCTCCT...CAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGACATGGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR GCA 90 bp CCCCATGTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGTGCCGCTGCCACTGCTaGTGGGGCTGGCATTGCACT +
Preference number: 4 (lower is better)
Translates to: PHVLIHGVRGTDAEPPRLCRCHC*WGWHCT
Trigger: AGTGCAATGCCAGCCCCAGCAGCAGTGGCAGCGGCA...CAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGACATGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp CCCCATGTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGCGCTGCCACTGCTGCTaGGGCTGGCATTGCACTCCT +
Preference number: 4 (lower is better)
Translates to: PHVLIHGVRGTDAEPPRLRCHCC*GWHCTP
Trigger: AGGAGTGCAATGCCAGCCCCAGCAGCAGTGGCAGCG...CAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGACATGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCCCCTGTCCCAACACTAAAGTGGTGCGGGTGCGCGTaGTGCCAGGGCTCCGTGGCG +
Preference number: 4 (lower is better)
Translates to: ITFSFAHAQTLSPVPTLKWCGCA*CQGSVA
Trigger: CGCCACGGAGCCCTGGCACCACGCGCACCCGCACCA...CTTTAGTGTTGGGACAGGGGAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR TCA 90 bp GTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGGTCAGAGGCTCAGGGCCCTGCTaGAATGTTCATCCACCACGG +
Preference number: 4 (lower is better)
Translates to: VLIHGVRGTDAEPPRLVRGSGPC*NVHPPR
Trigger: CCGTGGTGGATGAACATTTCAGCAGGGCCCTGAGCC...TCTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp CCCCATGTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGTCCTCATCCACGGAGTaGGAGGCACAGATGCTGAGC +
Preference number: 4 (lower is better)
Translates to: PHVLIHGVRGTDAEPPRLSSSTE*EAQMLS
Trigger: GCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGA...CAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGACATGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp GTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGGTCAGATGCTGGGGCTGGCATTaGACTCCTGCGCTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: VLIHGVRGTDAEPPRLVRCWGWH*TPALPA
Trigger: TGCAGGAAGCGCAGGAGTGCAATGCCAGCCCCAGCA...TCTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp GTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGGTCAGACTTGGACCCGCGCTCTaGAGTCATCAGGCGGAGCAA +
Preference number: 4 (lower is better)
Translates to: VLIHGVRGTDAEPPRLVRLGPAL*SHQAEQ
Trigger: TTGCTCCGCCTGATGACTCCAGAGCGCGGGTCCAAG...TCTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp CCCCATGTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGTGGCTGGGGTTTGGCTaGAAAATGAGGAGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: PHVLIHGVRGTDAEPPRLWLGFG*KMRSCR
Trigger: GCGGCAGCTCCTCATTTTCCAGCCAAACCCCAGCCA...CAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGACATGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp CCCCATGTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGGGGAAGGGGAAACCCTaGGTCAGCAGATCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: PHVLIHGVRGTDAEPPRLGKGKP*VSRSAQ
Trigger: CTGAGCTGATCTGCTGACCCAGGGTTTCCCCTTCCC...CAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGACATGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCCCCTGTCCCAACACTAAAGTGCATGGGCGGCGCTTaGACCCGCGCTCTGGAGTCA +
Preference number: 4 (lower is better)
Translates to: ITFSFAHAQTLSPVPTLKCMGGA*TRALES
Trigger: TGACTCCAGAGCGCGGGTCCAAGCGCCGCCCATGCA...CTTTAGTGTTGGGACAGGGGAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCCCCGGAGCTCAGGGGTaGTGCATGGGCGGCGCTTGG +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPPGAQG*CMGGAW
Trigger: CCAAGCGCCGCCCATGCAGCACCCCTGAGCTCCGGG...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
58% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCCTCAGGGGTGCTGCATaGGCGGCGCTTGGACCCGCG +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPLRGAA*AALGPA
Trigger: CGCGGGTCCAAGCGCCGCCCATGCAGCACCCCTGAG...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCCCCTGTCCCAACACTAAAGCGCTGCCACTGCTGCTaGGGCTGGCATTGCACTCCT +
Preference number: 4 (lower is better)
Translates to: ITFSFAHAQTLSPVPTLKRCHCC*GWHCTP
Trigger: AGGAGTGCAATGCCAGCCCCAGCAGCAGTGGCAGCG...CTTTAGTGTTGGGACAGGGGAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TCACCTGACTCAGCAATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCGCTCCGAGTGCGCGGTaGCCAGAGGGCTGCCCAGCG +
Preference number: 4 (lower is better)
Translates to: SPDSAISPQIFPVIRPKVAPSAR*PEGCPA
Trigger: CGCTGGGCAGCCCTCTGGCCACCGCGCACTCGGAGC...GACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGATTGCTGAGTCAGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR CCA 90 bp TCACCTGACTCAGCAATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCGGTGCCAGGGCTCCGTaGCGCCCTGGTGCAGGTGGC +
Preference number: 4 (lower is better)
Translates to: SPDSAISPQIFPVIRPKVGARAP*RPGAGG
Trigger: GCCACCTGCACCAGGGCGCCACGGAGCCCTGGCACC...GACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGATTGCTGAGTCAGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR CCA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACGCGCCCCGAGGCGGCTaGCATCAGCAGCGGCCCATA +
Preference number: 4 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYAPRGG*HQQRPI
Trigger: TATGGGCCGCTGCTGATGCCAGCCGCCTCGGGGCGC...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR TCA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACGAGCTGAGTCCACGCTaGGGCCCAGACCCTGGGCCA +
Preference number: 4 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYELSPR*GPDPGP
Trigger: TGGCCCAGGGTCTGGGCCTCAGCGTGGACTCAGCTC...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR GCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCGGGGGTGTAGGCGGCTaGGAAGTAGGGCTGCGGAGG +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPGGVGG*EVGLRR
Trigger: CCTCCGCAGCCCTACTTCGCAGCCGCCTACACCCCC...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACGGGGGTGTAGGCGGCTaGGAAGTAGGGCTGCGGAGG +
Preference number: 4 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYGGVGG*EVGLRR
Trigger: CCTCCGCAGCCCTACTTCGCAGCCGCCTACACCCCC...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp GTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGGTCAGATGTTCTGCCAAATACTaGGAACTGCCACCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: VLIHGVRGTDAEPPRLVRCSAKY*ELPPWV
Trigger: CACCCAAGGTGGCAGTTCTCAGTATTTGGCAGAACA...TCTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp GTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGGTCAGACTGGCATTGCACTCCTaGGCTTCCTGCATTTTGGAA +
Preference number: 4 (lower is better)
Translates to: VLIHGVRGTDAEPPRLVRLALHS*ASCILE
Trigger: TTCCAAAATGCAGGAAGCGCAGGAGTGCAATGCCAG...TCTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCCCGCCGGCTCGCCTTTaGCGGAGAGCTCGCAGGGAG +
Preference number: 4 (lower is better)
Translates to: SFPRSKKAYDITSPDSAIPPARL*RRARRE
Trigger: CTCCCTGCGAGCTCTCCGGCAAAGGCGAGCCGGCGG...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR CCA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGGCGGGGAAGCTGCGCTaGCTCATCGGGAAGGAGCAG +
Preference number: 4 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVAGKLR*LIGKEQ
Trigger: CTGCTCCTTCCCGATGAGCCAGCGCAGCTTCCCCGC...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR TCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTGGCTCAGGGCCCTGCTaGAATGTTCATCCACCACGG +
Preference number: 4 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFGSGPC*NVHPPR
Trigger: CCGTGGTGGATGAACATTTCAGCAGGGCCCTGAGCC...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCTGCCGCTGCCACTGCTaGTGGGGCTGGCATTGCACT +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPCRCHC*WGWHCT
Trigger: AGTGCAATGCCAGCCCCAGCAGCAGTGGCAGCGGCA...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp ATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCCCCTGTCCCAACACTAAAGCCCAGAGCTCCTTGGTaGTTTGCTGCTGGTACAGCT +
Preference number: 4 (lower is better)
Translates to: ITFSFAHAQTLSPVPTLKPRAPW*FAAGTA
Trigger: AGCTGTACCAGCAGCAAAGCACCAAGGAGCTCTGGG...CTTTAGTGTTGGGACAGGGGAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCGGCTCGGAATCCAGCTaGCTCGCTACCCTCCCACTC +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPGSESS*LATLPL
Trigger: GAGTGGGAGGGTAGCGAGCCAGCTGGATTCCGAGCC...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGGGGGGCACTGGCGCCTaGTACGCGCTATTCCAGAAG +
Preference number: 4 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVGGTGA*YALFQK
Trigger: CTTCTGGAATAGCGCGTACCAGGCGCCAGTGCCCCC...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
54% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR CCA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACAGGCTCCGTGGCGCCCTaGTGCAGGTGGCCATGCAGC +
Preference number: 4 (lower is better)
Translates to: CQILRTATLGDVFLEFSTGSVAP*CRWPCS
Trigger: GCTGCATGGCCACCTGCACCAGGGCGCCACGGAGCC...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR TCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTGGTTTGGCTGGAAAATaGGGAGCTGCCGCTGCCACT +
Preference number: 4 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFGLAGK*GAAAAT
Trigger: AGTGGCAGCGGCAGCTCCTCATTTTCCAGCCAAACC...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCGGACGCAGCGGGAGTTaGTGTACTCTGCCTCTGGTG +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPGRSGS*CTLPLV
Trigger: CACCAGAGGCAGAGTACATCAACTCCCGCTGCGTCC...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCGAGAGGCACAGATGCTaGGCCTCCAAGGCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPERHRC*ASKAGQ
Trigger: CTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTC...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGAGGAGCTCAGGGGTGCTaGATGGGCGGCGCTTGGACC +
Preference number: 4 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRGAQGC*MGGAWT
Trigger: GGTCCAAGCGCCGCCCATGCAGCACCCCTGAGCTCC...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTTGGAAAATGAGGAGCTaGCGCTGCCACTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFWKMRS*RCHCCW
Trigger: CCAGCAGCAGTGGCAGCGGCAGCTCCTCATTTTCCA...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGCTTGGACCCGCGCTCTaGAGTCATCAGGCGGAGCAA +
Preference number: 4 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVLGPAL*SHQAEQ
Trigger: TTGCTCCGCCTGATGACTCCAGAGCGCGGGTCCAAG...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp TCACCTGACTCAGCAATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCCATCCAGACAGCTCATaGCTCTCCGCAGCGGAGACG +
Preference number: 4 (lower is better)
Translates to: SPDSAISPQIFPVIRPKVHPDSS*LSAAET
Trigger: CGTCTCCGCTGCGGAGAGTCATGAGCTGTCTGGATG...GACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGATTGCTGAGTCAGGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGCTACCCTCCCACTCCTaGGATTTTACTCCCGACCGC +
Preference number: 4 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVLPSHS*DFTPDR
Trigger: GCGGTCGGGAGTAAAATCGCAGGAGTGGGAGGGTAG...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCGGGCCCAGAGCTCCTTaGTGCTTTGCTGCTGGTACA +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPGPRAP*CFAAGT
Trigger: TGTACCAGCAGCAAAGCACCAAGGAGCTCTGGGCCC...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGCCCAGAGCTCCTTGGTaGTTTGCTGCTGGTACAGCT +
Preference number: 4 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVPRAPW*FAAGTA
Trigger: AGCTGTACCAGCAGCAAAGCACCAAGGAGCTCTGGG...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp CCCCATGTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGTTGTCTAACAACAGCTaGATTTTAGTAAGACTTGGG +
Preference number: 4 (lower is better)
Translates to: PHVLIHGVRGTDAEPPRLLSNNS*ILVRLG
Trigger: CCCAAGTCTTACTAAAATGCAGCTGTTGTTAGACAA...CAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGACATGGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCATCACCTTCAGCTTTaGCCACGCACAGACCCTTTC +
Preference number: 4 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFHHLQL*PRTDPF
Trigger: GAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATG...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCACTCAGGGGTGCTGCATaGGCGGCGCTTGGACCCGCG +
Preference number: 4 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSLRGAA*AALGPA
Trigger: CGCGGGTCCAAGCGCCGCCCATGCAGCACCCCTGAG...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TCACCTGACTCAGCAATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCGTACTCTGCCTCTGGTaGGCGCTCTTTCTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: SPDSAISPQIFPVIRPKVVLCLW*ALFLWA
Trigger: AGCCCAGAGAAAGAGCGCCCACCAGAGGCAGAGTAC...GACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGATTGCTGAGTCAGGTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACGATGTACTCTGCCTCTaGTGGGCGCTCTTTCTCTGG +
Preference number: 4 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYDVLCL*WALFLW
Trigger: CCAGAGAAAGAGCGCCCACCAGAGGCAGAGTACATC...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTATTGTAGGGAAGGGATaGGCAGGAAGGGATCTGGAG +
Preference number: 4 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFIVGKG*AGRDLE
Trigger: CTCCAGATCCCTTCCTGCCCATCCCTTCCCTACAAT...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACACATCCAGACAGCTCATaGCTCTCCGCAGCGGAGACG +
Preference number: 4 (lower is better)
Translates to: CQILRTATLGDVFLEFSTHPDSS*LSAAET
Trigger: CGTCTCCGCTGCGGAGAGTCATGAGCTGTCTGGATG...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCGGTTTGGCTGGAAAATaGGGAGCTGCCGCTGCCACT +
Preference number: 4 (lower is better)
Translates to: SFPRSKKAYDITSPDSAIGLAGK*GAAAAT
Trigger: AGTGGCAGCGGCAGCTCCTCATTTTCCAGCCAAACC...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGAGAGAGGCACAGATGCTaGGCCTCCAAGGCTGGTCAG +
Preference number: 4 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRERHRC*ASKAGQ
Trigger: CTGACCAGCCTTGGAGGCTCAGCATCTGTGCCTCTC...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGATGCTGGGGCTGGCATTaGACTCCTGCGCTTCCTGCA +
Preference number: 4 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRCWGWH*TPALPA
Trigger: TGCAGGAAGCGCAGGAGTGCAATGCCAGCCCCAGCA...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCTGGAAAATGAGGAGCTaGCGCTGCCACTGCTGCTGG +
Preference number: 4 (lower is better)
Translates to: SFPRSKKAYDITSPDSAIWKMRS*RCHCCW
Trigger: CCAGCAGCAGTGGCAGCGGCAGCTCCTCATTTTCCA...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCGGAGTTGATGTACTCTaGCTCTGGTGGGCGCTCTTT +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPGVDVL*LWWALF
Trigger: AAAGAGCGCCCACCAGAGGCAGAGTACATCAACTCC...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCACAGCGGCGGGGGCACTaGCGCCTGGTACGCGCTATT +
Preference number: 4 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSQRRGH*RLVRAI
Trigger: AATAGCGCGTACCAGGCGCCAGTGCCCCCGCCGCTG...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR CCA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCCTGAGCCTCCAAGGCTaGTCAGAAGGGAAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: SFPRSKKAYDITSPDSAILSLQG*SEGKGK
Trigger: CTTCCCCTTCCCTTCTGACCAGCCTTGGAGGCTCAG...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCTGTTCTGCCAAATACTaGGAACTGCCACCTTGGGTG +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPCSAKY*ELPPWV
Trigger: CACCCAAGGTGGCAGTTCTCAGTATTTGGCAGAACA...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGACTACCCTCCCACTCCTaGGATTTTACTCCCGACCGC +
Preference number: 4 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRLPSHS*DFTPDR
Trigger: GCGGTCGGGAGTAAAATCGCAGGAGTGGGAGGGTAG...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCCTGGCATTGCACTCCTaGGCTTCCTGCATTTTGGAA +
Preference number: 4 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPLALHS*ASCILE
Trigger: TTCCAAAATGCAGGAAGCGCAGGAGTGCAATGCCAG...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGATGGCTGGGGTTTGGCTaGAAAATGAGGAGCTGCCGC +
Preference number: 4 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRWLGFG*KMRSCR
Trigger: GCGGCAGCTCCTCATTTTCCAGCCAAACCCCAGCCA...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACAGTACTCTGCCTCTGGTaGGCGCTCTTTCTCTGGGCT +
Preference number: 4 (lower is better)
Translates to: CQILRTATLGDVFLEFSTVLCLW*ALFLWA
Trigger: AGCCCAGAGAAAGAGCGCCCACCAGAGGCAGAGTAC...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGAGGGCCCAGAGCTCCTTaGTGCTTTGCTGCTGGTACA +
Preference number: 4 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRGPRAP*CFAAGT
Trigger: TGTACCAGCAGCAAAGCACCAAGGAGCTCTGGGCCC...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTGTGTATCTTTGCGTCTaGAGTGGGCATTGTAGGGAA +
Preference number: 4 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFVYLCV*SGHCRE
Trigger: TTCCCTACAATGCCCACTCCAGACGCAAAGATACAC...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCAGGCTCGGAATCCAGCTaGCTCGCTACCCTCCCACTC +
Preference number: 4 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSGSESS*LATLPL
Trigger: GAGTGGGAGGGTAGCGAGCCAGCTGGATTCCGAGCC...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCATTGTAGGGAAGGGATaGGCAGGAAGGGATCTGGAG +
Preference number: 4 (lower is better)
Translates to: SFPRSKKAYDITSPDSAIIVGKG*AGRDLE
Trigger: CTCCAGATCCCTTCCTGCCCATCCCTTCCCTACAAT...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGCTCCATGGAGACAGTTaGGGTCTCTCCTTGCTTTTT +
Preference number: 4 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVLHGDS*GLSLLF
Trigger: AAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAG...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACAGGAGTTGATGTACTCTaGCTCTGGTGGGCGCTCTTT +
Preference number: 4 (lower is better)
Translates to: CQILRTATLGDVFLEFSTGVDVL*LWWALF
Trigger: AAAGAGCGCCCACCAGAGGCAGAGTACATCAACTCC...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGGTTGGGGTCTCTCCTTaGTTTTTACATCCAGAGGAT +
Preference number: 4 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVVGVSP*FLHPED
Trigger: ATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACCTTCCTCTTTTATACTaGCTGGGGTTTGGCTGGAAA +
Preference number: 4 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYLPLLY*LGFGWK
Trigger: TTTCCAGCCAAACCCCAGCCAGTATAAAAGAGGAAG...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCAGGGAAGGGGAAACCCTaGGTCAGCAGATCAGCTCAG +
Preference number: 4 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSGKGKP*VSRSAQ
Trigger: CTGAGCTGATCTGCTGACCCAGGGTTTCCCCTTCCC...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCACTGAGCCTCCAAGGCTaGTCAGAAGGGAAGGGGAAG +
Preference number: 4 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSLSLQG*SEGKGK
Trigger: CTTCCCCTTCCCTTCTGACCAGCCTTGGAGGCTCAG...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR CAA 72 bp CTTGTGGTGATTCCTAGTTCTTCTCCATGGAGACAGTaGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATA +
Preference number: 4 (lower is better)
Translates to: LVVIPSSSPWRQ*GSLLAFYIQRI
Trigger: TATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAGAACTAGGAATCACCACAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGCACAGATATTTCCAGTaGTTCGGCCAAAAGTCATTA +
Preference number: 4 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVHRYFQ*FGQKSL
Trigger: TAATGACTTTTGGCCGAATCACTGGAAATATCTGTG...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTTTGTCTAACAACAGCTaGATTTTAGTAAGACTTGGG +
Preference number: 4 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFLSNNS*ILVRLG
Trigger: CCCAAGTCTTACTAAAATGCAGCTGTTGTTAGACAA...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTTATACCCAGTGCAATTaGAATTGTTCTGCCAAATAC +
Preference number: 4 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFYTQCN*NCSAKY
Trigger: GTATTTGGCAGAACAATTGCAATTGCACTGGGTATA...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCCTTCCTCTTTTATACTaGCTGGGGTTTGGCTGGAAA +
Preference number: 4 (lower is better)
Translates to: SFPRSKKAYDITSPDSAILPLLY*LGFGWK
Trigger: TTTCCAGCCAAACCCCAGCCAGTATAAAAGAGGAAG...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCAGATGTACTCTGCCTCTaGTGGGCGCTCTTTCTCTGG +
Preference number: 4 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSDVLCL*WALFLW
Trigger: CCAGAGAAAGAGCGCCCACCAGAGGCAGAGTACATC...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACAGTGTATCTTTGCGTCTaGAGTGGGCATTGTAGGGAA +
Preference number: 4 (lower is better)
Translates to: CQILRTATLGDVFLEFSTVYLCV*SGHCRE
Trigger: TTCCCTACAATGCCCACTCCAGACGCAAAGATACAC...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACAGTTGGGGTCTCTCCTTaGTTTTTACATCCAGAGGAT +
Preference number: 4 (lower is better)
Translates to: CQILRTATLGDVFLEFSTVGVSP*FLHPED
Trigger: ATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TCACCTGACTCAGCAATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCTGTAGTTGTGGTTTTTaGTTTTCCCAACACACTGAG +
Preference number: 4 (lower is better)
Translates to: SPDSAISPQIFPVIRPKVCSCGF*FSQHTE
Trigger: CTCAGTGTGTTGGGAAAACCAAAAACCACAACTACA...GACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGATTGCTGAGTCAGGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR TCA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGACACAGATATTTCCAGTaGTTCGGCCAAAAGTCATTA +
Preference number: 4 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRHRYFQ*FGQKSL
Trigger: TAATGACTTTTGGCCGAATCACTGGAAATATCTGTG...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACAGCGCTTCCTGCATTTTaGAATAATAGGCTAGTTTCT +
Preference number: 4 (lower is better)
Translates to: CQILRTATLGDVFLEFSTALPAF*NNRLVS
Trigger: AGAAACTAGCCTATTATTCCAAAATGCAGGAAGCGC...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CCA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCACTCCATGGAGACAGTTaGGGTCTCTCCTTGCTTTTT +
Preference number: 4 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSLHGDS*GLSLLF
Trigger: AAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAG...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR GCA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCACTCAGTCTTTGGATTTaGTCTTTCAGCAGCAGGACT +
Preference number: 4 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSLSLWI*SFSSRT
Trigger: AGTCCTGCTGCTGAAAGAGCAAATCCAAAGACTGAG...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR CAA 72 bp ACATATATATATATAATATACCCAGTGCAATTGCAATaGTTCTGCCAAATACTGAGAACTGCCACCTTGGGT +
Preference number: 4 (lower is better)
Translates to: TYIYIIYPVQLQ*FCQILRTATLG
Trigger: ACCCAAGGTGGCAGTTCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATATTATATATATATATGT
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
3UTR CAA 72 bp ATGCATACATATATATATATAATATACCCAGTGCAATaGCAATTGTTCTGCCAAATACTGAGAACTGCCACC +
Preference number: 4 (lower is better)
Translates to: MHTYIYIIYPVQ*QLFCQILRTAT
Trigger: GGTGGCAGTTCTCAGTATTTGGCAGAACAATTGCAATTGCACTGGGTATATTATATATATATATGTATGCAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CCA 90 bp GCGAGTAGGGGTCGGCGGCGGCGAAGGGCAGCTCCGAGTGCGCGGTaGCCAGAGGGCTGCCCAGCGGCGGGGGCACTGGCGCCTGGTACG +
Preference number: 5 (lower is better)
Translates to: ASRGRRRRRAAPSAR*PEGCPAAGALAPGT
Trigger: CGTACCAGGCGCCAGTGCCCCCGCCGCTGGGCAGCCCTCTGGCCACCGCGCACTCGGAGCTGCCCTTCGCCGCCGCCGACCCCTACTCGC
78% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS CCA 90 bp GATGCGGGTGCGCGTGGTGCGGGTGCGCGTGGTGCCAGGGCTCCGTaGCGCCCTGGTGCAGGTGGCCATGCAGCGCGGCGGGCGAGTAGG +
Preference number: 5 (lower is better)
Translates to: DAGARGAGARGARAP*RPGAGGHAARRASR
Trigger: CCTACTCGCCCGCCGCGCTGCATGGCCACCTGCACCAGGGCGCCACGGAGCCCTGGCACCACGCGCACCCGCACCACGCGCACCCGCATC
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS CCA 90 bp CCGGAGCTCAGGGGTGCTGCATGGGCGGCGCTTGGACCCGCGCTCTaGAGTCATCAGGCGGAGCAAAGCCAGCGCGCTCCGCGGCTCGGA +
Preference number: 5 (lower is better)
Translates to: PELRGAAWAALGPAL*SHQAEQSQRAPRLG
Trigger: TCCGAGCCGCGGAGCGCGCTGGCTTTGCTCCGCCTGATGACTCCAGAGCGCGGGTCCAAGCGCCGCCCATGCAGCACCCCTGAGCTCCGG
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CCA 90 bp GGCGCCTGGTACGCGCTATTCCAGAAGGAGGCGGGGAAGCTGCGCTaGCTCATCGGGAAGGAGCAGTCTCGCCAGGGCCCAGAGCTCCTT +
Preference number: 5 (lower is better)
Translates to: GAWYALFQKEAGKLR*LIGKEQSRQGPELL
Trigger: AAGGAGCTCTGGGCCCTGGCGAGACTGCTCCTTCCCGATGAGCCAGCGCAGCTTCCCCGCCTCCTTCTGGAATAGCGCGTACCAGGCGCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR CAA 90 bp CCCCATGTCCTCATCCACGGAGTGAGAGGCACAGATGCTGAGCCTCCAAGGCTGCTGCATGGGCGGCGCTaGGACCCGCGCTCTGGAGTC +
Preference number: 5 (lower is better)
Translates to: PHVLIHGVRGTDAEPPRLLHGRR*DPRSGV
Trigger: GACTCCAGAGCGCGGGTCCAAGCGCCGCCCATGCAG...CAGCCTTGGAGGCTCAGCATCTGTGCCTCTCACTCCGTGGATGAGGACATGGGG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS GCA 90 bp GCTCATCGGGAAGGAGCAGTCTCGCCAGGGCCCAGAGCTCCTTGGTaGTTTGCTGCTGGTACAGCTAGGAGAGTAGCTGCTGGGTTGGCT +
Preference number: 5 (lower is better)
Translates to: AHREGAVSPGPRAPW*FAAGTARRVAAGLA
Trigger: AGCCAACCCAGCAGCTACTCTCCTAGCTGTACCAGCAGCAAAGCACCAAGGAGCTCTGGGCCCTGGCGAGACTGCTCCTTCCCGATGAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS GCA 90 bp AAGGGGAAGGGGAAACCCTGGGTCAGCAGATCAGCTCAGGAGGGATaGACCACAGAGGGAATAACGACGAGCTCGCCAGGGCCCAGAGCT +
Preference number: 5 (lower is better)
Translates to: KGKGKPWVSRSAQEG*TTEGITTSSPGPRA
Trigger: AGCTCTGGGCCCTGGCGAGCTCGTCGTTATTCCCTCTGTGGTGCATCCCTCCTGAGCTGATCTGCTGACCCAGGGTTTCCCCTTCCCCTT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000352536.7
CDS GCA 90 bp ACAGAGGGAATAACGACGAGCTCGCCAGGGCCCAGAGCTCCTTGGTaGTTTGCTGCTGGTACAGCTAGGAGAGTAGCTGCTGGGTTGGCT +
Preference number: 5 (lower is better)
Translates to: TEGITTSSPGPRAPW*FAAGTARRVAAGLA
Trigger: AGCCAACCCAGCAGCTACTCTCCTAGCTGTACCAGCAGCAAAGCACCAAGGAGCTCTGGGCCCTGGCGAGCTCGTCGTTATTCCCTCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000352536.7
CDS-3UTR CAA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCCTGCATGGGCGGCGCTaGGACCCGCGCTCTGGAGTC +
Preference number: 5 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPLHGRR*DPRSGV
Trigger: GACTCCAGAGCGCGGGTCCAAGCGCCGCCCATGCAG...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp TCACCTGACTCAGCAATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCCCCGCCGGCTCGCCTTaGCCGGAGAGCTCGCAGGGA +
Preference number: 5 (lower is better)
Translates to: SPDSAISPQIFPVIRPKVPAGSP*PESSQG
Trigger: TCCCTGCGAGCTCTCCGGCAAAGGCGAGCCGGCGGG...GACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGATTGCTGAGTCAGGTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS-3UTR CAA 90 bp TCACCTGACTCAGCAATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCCTGCTGGGGCTGGCATaGCACTCCTGCGCTTCCTGC +
Preference number: 5 (lower is better)
Translates to: SPDSAISPQIFPVIRPKVLLGLA*HSCASC
Trigger: GCAGGAAGCGCAGGAGTGCAATGCCAGCCCCAGCAG...GACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGATTGCTGAGTCAGGTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CCA 90 bp ATAAGTGAAGAGGACGCAGCGGGAGTTGATGTACTCTGCCTCTGGTaGGCGCTCTTTCTCTGGGCTGCCTTCTTCCTCTTTTATACTGGC +
Preference number: 5 (lower is better)
Translates to: ISEEDAAGVDVLCLW*ALFLWAAFFLFYTG
Trigger: GCCAGTATAAAAGAGGAAGAAGGCAGCCCAGAGAAAGAGCGCCCACCAGAGGCAGAGTACATCAACTCCCGCTGCGTCCTCTTCACTTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCAGAGTAGCTGCTGGGTaGGCTCAGGGCCCTGCTGAA +
Preference number: 5 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPRVAAG*AQGPAE
Trigger: TTCAGCAGGGCCCTGAGCCAACCCAGCAGCTACTCT...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGACGCAGCGGGAGTaGATGTACTCTGCCTCTGGT +
Preference number: 5 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYRTQRE*MYSASG
Trigger: ACCAGAGGCAGAGTACATCAACTCCCGCTGCGTCCT...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ATGTTCGTCTCTTCTTCCTCATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCTCCAGATAAGCCACTaGCCACTCACATTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: MFVSSSSSPSALPTHRPFLQISH*PLTFRL
Trigger: CAGCCTGAATGTGAGTGGCAAGTGGCTTATCTGGAG...AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGAGGAAGAAGAGACGAACAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp TGCCAAATACTGAGAACTGCCACCTTGGGTGATGTATTTCTGGAGTTTTCAACAAGAGTAGCTGCTGGGTaGGCTCAGGGCCCTGCTGAA +
Preference number: 5 (lower is better)
Translates to: CQILRTATLGDVFLEFSTRVAAG*AQGPAE
Trigger: TTCAGCAGGGCCCTGAGCCAACCCAGCAGCTACTCT...TGTTGAAAACTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAGTATTTGGCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCTCATCACCTTCAGCTTaGCCCACGCACAGACCCTTT +
Preference number: 5 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPSSPSA*PTHRPF
Trigger: AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGA...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCCCCTGTCCCAACACTAAAGCCAGTGCAATTGCAATaGTTCTGCCAAATACTGAGA +
Preference number: 5 (lower is better)
Translates to: ITFSFAHAQTLSPVPTLKPVQLQ*FCQILR
Trigger: TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGG...CTTTAGTGTTGGGACAGGGGAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGCGGAGGACCATAGACTaGGTACATAACATCCAGACA +
Preference number: 5 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVRRTID*VHNIQT
Trigger: TGTCTGGATGTTATGTACCAAGTCTATGGTCCTCCG...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp GTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACAGGGACAGAATTCGTGACTCAGTCTTTGGATTaGCTCTTTCAGCAGCAGGAC +
Preference number: 5 (lower is better)
Translates to: VGVSPCFLHPEDTGTEFVTQSLD*LFQQQD
Trigger: GTCCTGCTGCTGAAAGAGCAAATCCAAAGACTGAGT...CACGAATTCTGTCCCTGTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGACTCCAGATAAGCCACTaGCCACTCACATTCAGGCTG +
Preference number: 5 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRLQISH*PLTFRL
Trigger: CAGCCTGAATGTGAGTGGCAAGTGGCTTATCTGGAG...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ATCACCTTCAGCTTTGCCCACGCACAGACCCTTTCCCCTGTCCCAACACTAAAGATATACCCAGTGCAATaGCAATTGTTCTGCCAAATA +
Preference number: 5 (lower is better)
Translates to: ITFSFAHAQTLSPVPTLKIYPVQ*QLFCQI
Trigger: TATTTGGCAGAACAATTGCAATTGCACTGGGTATAT...CTTTAGTGTTGGGACAGGGGAAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCCGGAGGACCATAGACTaGGTACATAACATCCAGACA +
Preference number: 5 (lower is better)
Translates to: SFPRSKKAYDITSPDSAIRRTID*VHNIQT
Trigger: TGTCTGGATGTTATGTACCAAGTCTATGGTCCTCCG...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCAAGGACGCAGCGGGAGTaGATGTACTCTGCCTCTGGT +
Preference number: 5 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSRTQRE*MYSASG
Trigger: ACCAGAGGCAGAGTACATCAACTCCCGCTGCGTCCT...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGACTGAGAACTGCCACCTaGGGTGATGTATTTCTGGAG +
Preference number: 5 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRLRTAT*GDVFLE
Trigger: CTCCAGAAATACATCACCCAAGGTGGCAGTTCTCAG...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGATCTCCATGGAGACAGTaGGGGTCTCTCCTTGCTTTT +
Preference number: 5 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRSPWRQ*GSLLAF
Trigger: AAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGA...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ACTTCATGTACATTTCTTCCCCTTGTGGTGATTCCTAGTTCTTCTCCATGGAGAACTCAGTCTTTGGATTaGCTCTTTCAGCAGCAGGAC +
Preference number: 5 (lower is better)
Translates to: TSCTFLPLVVIPSSSPWRTQSLD*LFQQQD
Trigger: GTCCTGCTGCTGAAAGAGCAAATCCAAAGACTGAGT...TCTCCATGGAGAAGAACTAGGAATCACCACAAGGGGAAGAAATGTACATGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp CTTCTCCATGGAGACAGTTGGGGTCTCTCCTTGCTTTTTACATCCAGAGGATACTGGAGTTTTCAACAGTaGTCTAACAACAGCTGCATT +
Preference number: 5 (lower is better)
Translates to: LLHGDSWGLSLLFTSRGYWSFQQ*SNNSCI
Trigger: AATGCAGCTGTTGTTAGACAACTGTTGAAAACTCCA...GTATCCTCTGGATGTAAAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp TGTGGTTTTTGGTTTTCCCAACACACTGAGAAGTCTGAAGTCTCTGCCTTCCCCTGGAGTTTTCAACAGTaGTCTAACAACAGCTGCATT +
Preference number: 5 (lower is better)
Translates to: CGFWFSQHTEKSEVSAFPWSFQQ*SNNSCI
Trigger: AATGCAGCTGTTGTTAGACAACTGTTGAAAACTCCA...GGGGAAGGCAGAGACTTCAGACTTCTCAGTGTGTTGGGAAAACCAAAAACCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCCCAGTGCAATTGCAATaGTTCTGCCAAATACTGAGA +
Preference number: 5 (lower is better)
Translates to: SFPRSKKAYDITSPDSAIPVQLQ*FCQILR
Trigger: TCTCAGTATTTGGCAGAACAATTGCAATTGCACTGG...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCATCATCACCTTCAGCTTaGCCCACGCACAGACCCTTT +
Preference number: 5 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSSSPSA*PTHRPF
Trigger: AAAGGGTCTGTGCGTGGGCAAAGCTGAAGGTGATGA...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp ATCTCACCACAGATATTTCCAGTGATTCGGCCAAAAGTCATTAAACATAACTCATCTCCATGGAGACAGTaGGGGTCTCTCCTTGCTTTT +
Preference number: 5 (lower is better)
Translates to: ISPQIFPVIRPKVIKHNSSPWRQ*GSLLAF
Trigger: AAAAGCAAGGAGAGACCCCAACTGTCTCCATGGAGA...TGAGTTATGTTTAATGACTTTTGGCCGAATCACTGGAAATATCTGTGGTGAGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS-3UTR CAA 90 bp TCTTTCCCCCGTTCCAAGAAAGCTTATGATATCACATCACCTGACTCAGCAATCATATACCCAGTGCAATaGCAATTGTTCTGCCAAATA +
Preference number: 5 (lower is better)
Translates to: SFPRSKKAYDITSPDSAIIYPVQ*QLFCQI
Trigger: TATTTGGCAGAACAATTGCAATTGCACTGGGTATAT...GATTGCTGAGTCAGGTGATGTGATATCATAAGCTTTCTTGGAACGGGGGAAAGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CCA 72 bp GCGCGTGGTGCGGGTGCGCGTGGTGCCAGGGCTCCGTaGCGCCCTGGTGCAGGTGGCCATGCAGCGCGGCGG +
Preference number: 6 (lower is better)
Translates to: ARGAGARGARAP*RPGAGGHAARR
Trigger: CCGCCGCGCTGCATGGCCACCTGCACCAGGGCGCCACGGAGCCCTGGCACCACGCGCACCCGCACCACGCGC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS CCA 72 bp GGCGGTTGCGAGGCGGGCCGGGCGCCCCGAGGCGGCTaGCATCAGCAGCGGCCCATAGCGCGGGTCGAAGTG +
Preference number: 6 (lower is better)
Translates to: GGCEAGRAPRGG*HQQRPIARVEV
Trigger: CACTTCGACCCGCGCTATGGGCCGCTGCTGATGCCAGCCGCCTCGGGGCGCCCGGCCCGCCTCGCAACCGCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS CCA 72 bp GCCAGAGGGCTGCCCAGCGGCGGGGGCACTGGCGCCTaGTACGCGCTATTCCAGAAGGAGGCGGGGAAGCTG +
Preference number: 6 (lower is better)
Translates to: ARGLPSGGGTGA*YALFQKEAGKL
Trigger: CAGCTTCCCCGCCTCCTTCTGGAATAGCGCGTACCAGGCGCCAGTGCCCCCGCCGCTGGGCAGCCCTCTGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS CCA 72 bp AGGGGTGCTGCATGGGCGGCGCTTGGACCCGCGCTCTaGAGTCATCAGGCGGAGCAAAGCCAGCGCGCTCCG +
Preference number: 6 (lower is better)
Translates to: RGAAWAALGPAL*SHQAEQSQRAP
Trigger: CGGAGCGCGCTGGCTTTGCTCCGCCTGATGACTCCAGAGCGCGGGTCCAAGCGCCGCCCATGCAGCACCCCT
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CCA 72 bp TTCCCCGGAGCTCAGGGGTGCTGCATGGGCGGCGCTTaGACCCGCGCTCTGGAGTCATCAGGCGGAGCAAAG +
Preference number: 6 (lower is better)
Translates to: FPGAQGCCMGGA*TRALESSGGAK
Trigger: CTTTGCTCCGCCTGATGACTCCAGAGCGCGGGTCCAAGCGCCGCCCATGCAGCACCCCTGAGCTCCGGGGAA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CAA 90 bp TTAACTCTCCTTCCCCGGAGCTCAGGGGTGCTGCATGGGCGGCGCTaGGACCCGCGCTCTGGAGTCATCAGGCGGAGCAAAGCCAGCGCG +
Preference number: 6 (lower is better)
Translates to: LTLLPRSSGVLHGRR*DPRSGVIRRSKASA
Trigger: CGCGCTGGCTTTGCTCCGCCTGATGACTCCAGAGCGCGGGTCCAAGCGCCGCCCATGCAGCACCCCTGAGCTCCGGGGAAGGAGAGTTAA
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CCA 72 bp AGCAAAGCCAGCGCGCTCCGCGGCTCGGAATCCAGCTaGCTCGCTACCCTCCCACTCCTGCGATTTTACTCC +
Preference number: 6 (lower is better)
Translates to: SKASALRGSESS*LATLPLLRFYS
Trigger: GGAGTAAAATCGCAGGAGTGGGAGGGTAGCGAGCCAGCTGGATTCCGAGCCGCGGAGCGCGCTGGCTTTGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CCA 72 bp ATTAACTCTCCTTCCCCGGAGCTCAGGGGTGCTGCATaGGCGGCGCTTGGACCCGCGCTCTGGAGTCATCAG +
Preference number: 6 (lower is better)
Translates to: INSPSPELRGAA*AALGPALWSHQ
Trigger: CTGATGACTCCAGAGCGCGGGTCCAAGCGCCGCCCATGCAGCACCCCTGAGCTCCGGGGAAGGAGAGTTAAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS GCA 72 bp TTTGGCTGGAAAATGAGGAGCTGCCGCTGCCACTGCTaGTGGGGCTGGCATTGCACTCCTGCGCTTCCTGCA +
Preference number: 6 (lower is better)
Translates to: FGWKMRSCRCHC*WGWHCTPALPA
Trigger: TGCAGGAAGCGCAGGAGTGCAATGCCAGCCCCAGCAGCAGTGGCAGCGGCAGCTCCTCATTTTCCAGCCAAA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS GCA 72 bp GGGAAACCCTGGGTCAGCAGATCAGCTCAGGAGGGATaGACCACAGAGGGAATAACGACGAGCTCGCCAGGG +
Preference number: 6 (lower is better)
Translates to: GKPWVSRSAQEG*TTEGITTSSPG
Trigger: CCCTGGCGAGCTCGTCGTTATTCCCTCTGTGGTGCATCCCTCCTGAGCTGATCTGCTGACCCAGGGTTTCCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000352536.7
CDS CCA 72 bp CGGGAAGGAGCAGTCTCGCCAGGGCCCAGAGCTCCTTaGTGCTTTGCTGCTGGTACAGCTAGGAGAGTAGCT +
Preference number: 6 (lower is better)
Translates to: REGAVSPGPRAP*CFAAGTARRVA
Trigger: AGCTACTCTCCTAGCTGTACCAGCAGCAAAGCACCAAGGAGCTCTGGGCCCTGGCGAGACTGCTCCTTCCCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS GCA 72 bp GAAGGAGCAGTCTCGCCAGGGCCCAGAGCTCCTTGGTaGTTTGCTGCTGGTACAGCTAGGAGAGTAGCTGCT +
Preference number: 6 (lower is better)
Translates to: EGAVSPGPRAPW*FAAGTARRVAA
Trigger: AGCAGCTACTCTCCTAGCTGTACCAGCAGCAAAGCACCAAGGAGCTCTGGGCCCTGGCGAGACTGCTCCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000326274.6
CDS CCA 72 bp GAAGAGGACGCAGCGGGAGTTGATGTACTCTGCCTCTaGTGGGCGCTCTTTCTCTGGGCTGCCTTCTTCCTC +
Preference number: 6 (lower is better)
Translates to: EEDAAGVDVLCL*WALFLWAAFFL
Trigger: GAGGAAGAAGGCAGCCCAGAGAAAGAGCGCCCACCAGAGGCAGAGTACATCAACTCCCGCTGCGTCCTCTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CAA 90 bp GGGGGTGTAGGCGGCTGCGAAGTAGGGCTGCGGAGGACCATAGACTaGGTACATAACATCCAGACAGCTCATGACTCTCCGCAGCGGAGA +
Preference number: 6 (lower is better)
Translates to: GGVGGCEVGLRRTID*VHNIQTAHDSPQRR
Trigger: TCTCCGCTGCGGAGAGTCATGAGCTGTCTGGATGTTATGTACCAAGTCTATGGTCCTCCGCAGCCCTACTTCGCAGCCGCCTACACCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS GCA 72 bp ATAACGACGAGCTCGCCAGGGCCCAGAGCTCCTTGGTaGTTTGCTGCTGGTACAGCTAGGAGAGTAGCTGCT +
Preference number: 6 (lower is better)
Translates to: ITTSSPGPRAPW*FAAGTARRVAA
Trigger: AGCAGCTACTCTCCTAGCTGTACCAGCAGCAAAGCACCAAGGAGCTCTGGGCCCTGGCGAGCTCGTCGTTAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000352536.7
CDS CCA 72 bp GAGGACGCAGCGGGAGTTGATGTACTCTGCCTCTGGTaGGCGCTCTTTCTCTGGGCTGCCTTCTTCCTCTTT +
Preference number: 6 (lower is better)
Translates to: EDAAGVDVLCLW*ALFLWAAFFLF
Trigger: AAAGAGGAAGAAGGCAGCCCAGAGAAAGAGCGCCCACCAGAGGCAGAGTACATCAACTCCCGCTGCGTCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7
CDS CCA 72 bp GGAATAACGACGAGCTCGCCAGGGCCCAGAGCTCCTTaGTGCTTTGCTGCTGGTACAGCTAGGAGAGTAGCT +
Preference number: 6 (lower is better)
Translates to: GITTSSPGPRAP*CFAAGTARRVA
Trigger: AGCTACTCTCCTAGCTGTACCAGCAGCAAAGCACCAAGGAGCTCTGGGCCCTGGCGAGCTCGTCGTTATTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000352536.7
CDS CAA 72 bp GGCGGCTGCGAAGTAGGGCTGCGGAGGACCATAGACTaGGTACATAACATCCAGACAGCTCATGACTCTCCG +
Preference number: 6 (lower is better)
Translates to: GGCEVGLRRTID*VHNIQTAHDSP
Trigger: CGGAGAGTCATGAGCTGTCTGGATGTTATGTACCAAGTCTATGGTCCTCCGCAGCCCTACTTCGCAGCCGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000326274.6
ENST00000352536.7