Pregenerated sensors for VDAC3 (Homo sapiens)
Ensembl gene IDs: ENSG00000078668Ensembl transcript IDs: ENST00000022615.9, ENST00000518563.5, ENST00000519072.5, ENST00000520115.5
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AGAAAACCATCACCAGCAAGTCACATGAGCAGTTATGTTCCAAATGTGATGGGTGGGACATGCAGGACGTaGTGTACAAACTGGTGGGTC | + |
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Preference number: 2 (lower is better) Translates to: RKPSPASHMSSYVPNVMGGTCRT*CTNWWV Trigger: GACCCACCAGTTTGTACATCACGTCCTGCATGTCCC...ACCCATCACATTTGGAACATAACTGCTCATGTGACTTGCTGGTGATGGTTTTCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000022615.9 |
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| 3UTR-3UTR GCA 90 bp | AGAAAACCATCACCAGCAAGTCACATGAGCAGTTATGTTCCAAATGTGATGGGTGACAACTTCCAGGCATaGCTTCAAGCATCTCCCTCA | + |
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Preference number: 2 (lower is better) Translates to: RKPSPASHMSSYVPNVMGDNFQA*LQASPS Trigger: TGAGGGAGATGCTTGAAGGCATGCCTGGAAGTTGTC...ACCCATCACATTTGGAACATAACTGCTCATGTGACTTGCTGGTGATGGTTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000022615.9 |
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| CDS-3UTR GCA 90 bp | AGAAAACCATCACCAGCAAGTCACATGAGCAGTTATGTTCCAAATGTGATGGGTCCGAGGGCCTGTCTCTaGTCCGCCAGGGCAACGCTG | + |
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Preference number: 4 (lower is better) Translates to: RKPSPASHMSSYVPNVMGPRACL*SARATL Trigger: CAGCGTTGCCCTGGCGGAGCAGAGACAGGCCCTCGG...ACCCATCACATTTGGAACATAACTGCTCATGTGACTTGCTGGTGATGGTTTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000022615.9 |
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| CDS-3UTR TCA 90 bp | AGAAAACCATCACCAGCAAGTCACATGAGCAGTTATGTTCCAAATGTGATGGGTCTGATAAAGTCAATTTaGCTCCTGGTCGAAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: RKPSPASHMSSYVPNVMGLIKSI*LLVEGS Trigger: AGACCCTTCGACCAGGAGTCAAATTGACTTTATCAG...ACCCATCACATTTGGAACATAACTGCTCATGTGACTTGCTGGTGATGGTTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000022615.9 |
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| CDS-3UTR TCA 90 bp | AGAAAACCATCACCAGCAAGTCACATGAGCAGTTATGTTCCAAATGTGATGGGTCACCAGCAAGTCACATaGGCAGTTATGTTCCAAATG | + |
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Preference number: 4 (lower is better) Translates to: RKPSPASHMSSYVPNVMGHQQVT*AVMFQM Trigger: CATTTGGAACATAACTGCTCATGTGACTTGCTGGTG...ACCCATCACATTTGGAACATAACTGCTCATGTGACTTGCTGGTGATGGTTTTCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000022615.9 |
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| CDS-3UTR GCA 90 bp | AGAAAACCATCACCAGCAAGTCACATGAGCAGTTATGTTCCAAATGTGATGGGTAACCTCCAAATTCAGTaGCATCGTTCACATGTGTGT | + |
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Preference number: 4 (lower is better) Translates to: RKPSPASHMSSYVPNVMGNLQIQ*HRSHVC Trigger: ACACACATGTGAACGATGGCACTGAATTTGGAGGTT...ACCCATCACATTTGGAACATAACTGCTCATGTGACTTGCTGGTGATGGTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000022615.9 |
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| CDS-3UTR CCA 90 bp | AGAAAACCATCACCAGCAAGTCACATGAGCAGTTATGTTCCAAATGTGATGGGTAGTCAATTTGACTCCTaGTCGAAGGGTCTGAGTATA | + |
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Preference number: 4 (lower is better) Translates to: RKPSPASHMSSYVPNVMGSQFDS*SKGLSI Trigger: TATACTCAGACCCTTCGACCAGGAGTCAAATTGACT...ACCCATCACATTTGGAACATAACTGCTCATGTGACTTGCTGGTGATGGTTTTCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000022615.9 |
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| CDS TCA 90 bp | AGACCTCCACCCCGAGGGCCTGTCTCTGCTCCGCCAGGGCAACGCTaGAGGTCTTCAAACCAACGCCGTCCGCGCCTGCGCAGCCTCGCA | + |
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Preference number: 5 (lower is better) Translates to: RPPPRGPVSAPPGQR*RSSNQRRPRLRSLA Trigger: TGCGAGGCTGCGCAGGCGCGGACGGCGTTGGTTTGAAGACCTTCAGCGTTGCCCTGGCGGAGCAGAGACAGGCCCTCGGGGTGGAGGTCT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518563.5 |
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| CDS TCA 90 bp | AGCATTTCTGAAATCCTGCCAACAGTAATGAGATGCTGCCAACCCTaGCCAGTCTTTTTCACTGCCTGCAACATGAATCCTCTCCTTAAC | + |
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Preference number: 5 (lower is better) Translates to: SISEILPTVMRCCQP*PVFFTACNMNPLLN Trigger: GTTAAGGAGAGGATTCATGTTGCAGGCAGTGAAAAAGACTGGTCAGGGTTGGCAGCATCTCATTACTGTTGGCAGGATTTCAGAAATGCT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000519072.5 |
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| CDS-3UTR CAA 90 bp | AGAAAACCATCACCAGCAAGTCACATGAGCAGTTATGTTCCAAATGTGATGGGTATGCCAAAACGGGTGTaGTTACTCCCAGCTGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: RKPSPASHMSSYVPNVMGMPKRV*LLPAVQ Trigger: TTGGACAGCTGGGAGTAACAACACCCGTTTTGGCAT...ACCCATCACATTTGGAACATAACTGCTCATGTGACTTGCTGGTGATGGTTTTCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000022615.9 |
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| CDS-3UTR CAA 90 bp | AGAAAACCATCACCAGCAAGTCACATGAGCAGTTATGTTCCAAATGTGATGGGTGCTGATAAAGTCAATTaGACTCCTGGTCGAAGGGTC | + |
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Preference number: 5 (lower is better) Translates to: RKPSPASHMSSYVPNVMGADKVN*TPGRRV Trigger: GACCCTTCGACCAGGAGTCAAATTGACTTTATCAGC...ACCCATCACATTTGGAACATAACTGCTCATGTGACTTGCTGGTGATGGTTTTCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000022615.9 |
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| CDS TCA 90 bp | TCCTTAACAAATGCCCTGTCCCCTAACTCTAGTTCTACAGGCAGATaGGACAACTGGGAAGTTATGTTCTGTTTATCAAACCACACAGAA | + |
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Preference number: 5 (lower is better) Translates to: SLTNALSPNSSSTGR*DNWEVMFCLSNHTE Trigger: TTCTGTGTGGTTTGATAAACAGAACATAACTTCCCAGTTGTCTCATCTGCCTGTAGAACTAGAGTTAGGGGACAGGGCATTTGTTAAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519072.5 |
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| CDS CAA 72 bp | GCGCGTGCGCAGGAGGGCTCGGTGTGGACAGTGAGGTaGACTGGGGGCCCAAGAGGCTGGGGACCGCACCTG | + |
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Preference number: 6 (lower is better) Translates to: ARAQEGSVWTVR*TGGPRGWGPHL Trigger: CAGGTGCGGTCCCCAGCCTCTTGGGCCCCCAGTCAACCTCACTGTCCACACCGAGCCCTCCTGCGCACGCGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000518563.5 |
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| CDS TCA 72 bp | CCCCGAGGGCCTGTCTCTGCTCCGCCAGGGCAACGCTaGAGGTCTTCAAACCAACGCCGTCCGCGCCTGCGC | + |
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Preference number: 6 (lower is better) Translates to: PRGPVSAPPGQR*RSSNQRRPRLR Trigger: GCGCAGGCGCGGACGGCGTTGGTTTGAAGACCTTCAGCGTTGCCCTGGCGGAGCAGAGACAGGCCCTCGGGG 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000518563.5 ENST00000520115.5 |
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| CDS GCA 72 bp | GCCAGCACCACCAACTGTCCGGCTCCGCAGCGCGCGTaGGCAGGAGGGCTCGGTGTGGACAGTGAGGTTGAC | + |
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Preference number: 6 (lower is better) Translates to: ASTTNCPAPQRA*AGGLGVDSEVD Trigger: GTCAACCTCACTGTCCACACCGAGCCCTCCTGCGCACGCGCGCTGCGGAGCCGGACAGTTGGTGGTGCTGGC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000518563.5 |
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| CDS TCA 72 bp | GCCAACCCTGACCAGTCTTTTTCACTGCCTGCAACATaGATCCTCTCCTTAACAAATGCCCTGTCCCCTAAC | + |
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Preference number: 6 (lower is better) Translates to: ANPDQSFSLPAT*ILSLTNALSPN Trigger: GTTAGGGGACAGGGCATTTGTTAAGGAGAGGATTCATGTTGCAGGCAGTGAAAAAGACTGGTCAGGGTTGGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000519072.5 |
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| CDS TCA 72 bp | AATGCCCTGTCCCCTAACTCTAGTTCTACAGGCAGATaGGACAACTGGGAAGTTATGTTCTGTTTATCAAAC | + |
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Preference number: 6 (lower is better) Translates to: NALSPNSSSTGR*DNWEVMFCLSN Trigger: GTTTGATAAACAGAACATAACTTCCCAGTTGTCTCATCTGCCTGTAGAACTAGAGTTAGGGGACAGGGCATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519072.5 |
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| CDS CAA 90 bp | AGAGGGGTAGTCTACATTTCTCCCTTGTCAGCATCAATTCTTAGTTaGAAGGTCTGTCACGAATCTAAAATGCCACAGGTACAAATCTCA | + |
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Preference number: 6 (lower is better) Translates to: RGVVYISPLSASILS*KVCHESKMPQVQIS Trigger: TGAGATTTGTACCTGTGGCATTTTAGATTCGTGACAGACCTTCAAACTAAGAATTGATGCTGACAAGGGAGAAATGTAGACTACCCCTCT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000519072.5 |
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| CDS TCA 72 bp | TCTACATTTCTCCCTTGTCAGCATCAATTCTTAGTTTaGAGGTCTGTCACGAATCTAAAATGCCACAGGTAC | + |
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Preference number: 6 (lower is better) Translates to: STFLPCQHQFLV*RSVTNLKCHRY Trigger: GTACCTGTGGCATTTTAGATTCGTGACAGACCTTCAAACTAAGAATTGATGCTGACAAGGGAGAAATGTAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519072.5 |
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| CDS CAA 72 bp | GTCTACATTTCTCCCTTGTCAGCATCAATTCTTAGTTaGAAGGTCTGTCACGAATCTAAAATGCCACAGGTA | + |
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Preference number: 6 (lower is better) Translates to: VYISPLSASILS*KVCHESKMPQV Trigger: TACCTGTGGCATTTTAGATTCGTGACAGACCTTCAAACTAAGAATTGATGCTGACAAGGGAGAAATGTAGAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000519072.5 |
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