Pregenerated sensors for VCPKMT (Homo sapiens)
Ensembl gene IDs: ENSG00000100483Ensembl transcript IDs: ENST00000395859.2, ENST00000395860.7, ENST00000484763.1, ENST00000491402.5, ENST00000569518.5
Found 25 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AGGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTGGATTCAGGGCCATTaGCAGGCAGGCAGGCAAGCA | + |
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Preference number: 2 (lower is better) Translates to: RQASRNFSYCRQPLVVIIWIQGH*QAGRQA Trigger: TGCTTGCCTGCCTGCCTGCCAATGGCCCTGAATCCA...GATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| 3UTR-3UTR CAA 90 bp | AGGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCCAGGAATTTTTCGTATaGCAGACAGCCCCTGGTGGT | + |
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Preference number: 3 (lower is better) Translates to: RQASRNFSYCRQPLVVIIQEFFV*QTAPGG Trigger: ACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTG...GATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| 3UTR-3UTR CAA 90 bp | AGGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTCATGTTGGCTGTTTTaGGCAGATTTCAGCCTCGCC | + |
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Preference number: 3 (lower is better) Translates to: RQASRNFSYCRQPLVVIISCWLF*ADFSLA Trigger: GGCGAGGCTGAAATCTGCCAAAAACAGCCAACATGA...GATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR GCA 90 bp | GGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTCAGCGTATCCGCCATTaGGCCCGGCAACAGAAAGCG | + |
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Preference number: 4 (lower is better) Translates to: GRQAGIFRIADSPWWSSSQRIRH*ARQQKA Trigger: CGCTTTCTGTTGCCGGGCGCAATGGCGGATACGCTG...AGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000491402.5 |
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| CDS-3UTR CCA 90 bp | GGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTATACTGGATTCAGGGCCATTaGCAGGCAGGCAGGCAAGCA | + |
|
Preference number: 4 (lower is better) Translates to: GKQEFFVLQTAPGGHHLYWIQGH*QAGRQA Trigger: TGCTTGCCTGCCTGCCTGCCAATGGCCCTGAATCCA...GTATAGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR GCA 90 bp | AGGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCCCACCGGAGCTATACTaGTGTAGTCGTAGCACTGTA | + |
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Preference number: 4 (lower is better) Translates to: RQASRNFSYCRQPLVVIIPPELY*CSRSTV Trigger: TACAGTGCTACGACTACAGCAGTATAGCTCCGGTGG...GATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR GCA 90 bp | GGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTCCACCGGAGCTATACTaGTGTAGTCGTAGCACTGTA | + |
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Preference number: 4 (lower is better) Translates to: GRQAGIFRIADSPWWSSSPPELY*CSRSTV Trigger: TACAGTGCTACGACTACAGCAGTATAGCTCCGGTGG...AGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR GCA 90 bp | GGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTAGGAATTTTTCGTATTaGAGACAGCCCCTGGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: GRQAGIFRIADSPWWSSSRNFSY*RQPLVV Trigger: GACCACCAGGGGCTGTCTGCAATACGAAAAATTCCT...AGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR GCA 90 bp | AGGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCAGGAATTTTTCGTATTaGAGACAGCCCCTGGTGGTC | + |
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Preference number: 4 (lower is better) Translates to: RQASRNFSYCRQPLVVIIRNFSY*RQPLVV Trigger: GACCACCAGGGGCTGTCTGCAATACGAAAAATTCCT...GATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CCA 90 bp | GGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTCATGTTGGCTGTTTTTaGCAGATTTCAGCCTCGCCT | + |
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Preference number: 4 (lower is better) Translates to: GRQAGIFRIADSPWWSSSHVGCF*QISASP Trigger: AGGCGAGGCTGAAATCTGCCAAAAACAGCCAACATG...AGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CCA 90 bp | AGGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCCATGTTGGCTGTTTTTaGCAGATTTCAGCCTCGCCT | + |
|
Preference number: 4 (lower is better) Translates to: RQASRNFSYCRQPLVVIIHVGCF*QISASP Trigger: AGGCGAGGCTGAAATCTGCCAAAAACAGCCAACATG...GATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR GCA 90 bp | GGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTATCTTCAGCAAGTCTTaGAATTCCTCAAGATCGGTG | + |
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Preference number: 4 (lower is better) Translates to: GRQAGIFRIADSPWWSSSIFSKS*NSSRSV Trigger: CACCGATCTTGAGGAATTGCAAGACTTGCTGAAGAT...AGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR GCA 90 bp | GGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTATACATCTTCAGCAAGTCTTaGAATTCCTCAAGATCGGTG | + |
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Preference number: 4 (lower is better) Translates to: GKQEFFVLQTAPGGHHLYIFSKS*NSSRSV Trigger: CACCGATCTTGAGGAATTGCAAGACTTGCTGAAGAT...GTATAGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR GCA 90 bp | GGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTAACATATACATAAAGTaGATGAGCCACGTAAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: GRQAGIFRIADSPWWSSSNIYIK*MSHVSA Trigger: TGCACTTACGTGGCTCATGCACTTTATGTATATGTT...AGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR GCA 90 bp | GGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTATACAACATATACATAAAGTaGATGAGCCACGTAAGTGCA | + |
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Preference number: 4 (lower is better) Translates to: GKQEFFVLQTAPGGHHLYNIYIK*MSHVSA Trigger: TGCACTTACGTGGCTCATGCACTTTATGTATATGTT...GTATAGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CAA 90 bp | AGGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCCCAGCGTATCCGCCATaGCGCCCGGCAACAGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: RQASRNFSYCRQPLVVIIPAYPP*RPATES Trigger: GCTTTCTGTTGCCGGGCGCAATGGCGGATACGCTGG...GATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CAA 90 bp | GGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTATACCCAGCGTATCCGCCATaGCGCCCGGCAACAGAAAGC | + |
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Preference number: 5 (lower is better) Translates to: GKQEFFVLQTAPGGHHLYPAYPP*RPATES Trigger: GCTTTCTGTTGCCGGGCGCAATGGCGGATACGCTGG...GTATAGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CAA 90 bp | GGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTCAGGAATTTTTCGTATaGCAGACAGCCCCTGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: GRQAGIFRIADSPWWSSSQEFFV*QTAPGG Trigger: ACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTG...AGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CAA 90 bp | AGGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCCATCTTCAGCAAGTCTaGCAATTCCTCAAGATCGGT | + |
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Preference number: 5 (lower is better) Translates to: RQASRNFSYCRQPLVVIIHLQQV*QFLKIG Trigger: ACCGATCTTGAGGAATTGCAAGACTTGCTGAAGATG...GATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CAA 90 bp | GGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTATACCAGGAATTTTTCGTATaGCAGACAGCCCCTGGTGGT | + |
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Preference number: 5 (lower is better) Translates to: GKQEFFVLQTAPGGHHLYQEFFV*QTAPGG Trigger: ACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTG...GTATAGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CAA 90 bp | GGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTATACTCATGTTGGCTGTTTTaGGCAGATTTCAGCCTCGCC | + |
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Preference number: 5 (lower is better) Translates to: GKQEFFVLQTAPGGHHLYSCWLF*ADFSLA Trigger: GGCGAGGCTGAAATCTGCCAAAAACAGCCAACATGA...GTATAGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CAA 90 bp | AGGCAGGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTCCAGTCAAATCATGTaGGCTGTTTTTGGCAGATTT | + |
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Preference number: 5 (lower is better) Translates to: RQASRNFSYCRQPLVVIISSQIM*AVFGRF Trigger: AAATCTGCCAAAAACAGCCAACATGATTTGACTGGA...GATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCCTGCCT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS-3UTR CAA 90 bp | GGCAAGCAGGAATTTTTCGTATTGCAGACAGCCCCTGGTGGTCATCATCTATACTCCAGTCAAATCATGTaGGCTGTTTTTGGCAGATTT | + |
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Preference number: 5 (lower is better) Translates to: GKQEFFVLQTAPGGHHLYSSQIM*AVFGRF Trigger: AAATCTGCCAAAAACAGCCAACATGATTTGACTGGA...GTATAGATGATGACCACCAGGGGCTGTCTGCAATACGAAAAATTCCTGCTTGCC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 2 transcripts: ENST00000395860.7 ENST00000491402.5 |
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| CDS GCA 72 bp | TCCCACACAACGCAACCCACGCCACCGGAGCTATACTaGTGTAGTCGTAGCACTGTACCATCCCGCTTCTCC | + |
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Preference number: 6 (lower is better) Translates to: SHTTQPTPPELY*CSRSTVPSRFS Trigger: GGAGAAGCGGGATGGTACAGTGCTACGACTACAGCAGTATAGCTCCGGTGGCGTGGGTTGCGTTGTGTGGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000395859.2 ENST00000395860.7 ENST00000484763.1 ENST00000491402.5 |
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| CDS CAA 72 bp | GTACCCTCAAAAGGAGTCACTCACAATGTGATAGATTaGTGCCCATATAAGGGTTTGGGTGATCACTCAAAA | + |
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Preference number: 6 (lower is better) Translates to: VPSKGVTHNVID*CPYKGLGDHSK Trigger: TTTTGAGTGATCACCCAAACCCTTATATGGGCACAAATCTATCACATTGTGAGTGACTCCTTTTGAGGGTAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000569518.5 |
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