Pregenerated sensors for VAPA (Homo sapiens)
Ensembl gene IDs: ENSG00000101558Ensembl transcript IDs: ENST00000340541.4, ENST00000400000.7, ENST00000577539.1, ENST00000577901.5, ENST00000578314.1, ENST00000583475.1, ENST00000585042.5
Found 98 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGCCACTGCTTACGCGAAGAAGCGTGGTGGTAGTCTACCAAAAGTaGGGCTATGAAACGTGGCATGAAAATCAGCTGTTCTCACTTCCT | + |
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Preference number: 1 (lower is better) Translates to: MPLLTRRSVVVVYQK*GYETWHENQLFSLP Trigger: AGGAAGTGAGAACAGCTGATTTTCATGCCACGTTTCATAGCCCCACTTTTGGTAGACTACCACCACGCTTCTTCGCGTAAGCAGTGGCAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR TCA 90 bp | TCAACAGACCAGATATCTAGTTCCAGCTCTGCCTCTACCTACCTGTaGGACACGGGGAAAGTTCTCTTAACCTTCGTAAGGCCTCAGATT | + |
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Preference number: 1 (lower is better) Translates to: STDQISSSSSASTYL*DTGKVLLTFVRPQI Trigger: AATCTGAGGCCTTACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTGGAACTAGATATCTGGTCTGTTGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR CCA 90 bp | TTAGTGATATATGTTTATACTTCTTTGCACCAACCCACGAGCGGCTaGGCATTCATTCCCAAGATGCCACTGCTTACGCGAAGAAGCGTG | + |
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Preference number: 1 (lower is better) Translates to: LVIYVYTSLHQPTSG*AFIPKMPLLTRRSV Trigger: CACGCTTCTTCGCGTAAGCAGTGGCATCTTGGGAATGAATGCCCAGCCGCTCGTGGGTTGGTGCAAAGAAGTATAAACATATATCACTAA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR TCA 90 bp | AAGAGGGTTTCAATGCAAGAGAAACCTTTGCATCATAATTTCAAGTaGCCATATATAGTGGAGTTCCCTCTAATAACACGACAGACACAA | + |
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Preference number: 1 (lower is better) Translates to: KRVSMQEKPLHHNFK*PYIVEFPLITRQTQ Trigger: TTGTGTCTGTCGTGTTATTAGAGGGAACTCCACTATATATGGTCACTTGAAATTATGATGCAAAGGTTTCTCTTGCATTGAAACCCTCTT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR GCA 90 bp | AAATGGCAATTAATACTGAAGCCCACATTTCTCAAATCGCCTTTTTaGGATGACAGCTCATTTATTCACAAGTCAAAAATCTTTAGTGGT | + |
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Preference number: 1 (lower is better) Translates to: KWQLILKPTFLKSPF*DDSSFIHKSKIFSG Trigger: ACCACTAAAGATTTTTGACTTGTGAATAAATGAGCTGTCATCGCAAAAAGGCGATTTGAGAAATGTGGGCTTCAGTATTAATTGCCATTT 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR-3UTR GCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTGATGGAGCACAGCCATaGTGTACACATCAACTCACT | + |
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Preference number: 2 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLDGAQP*CTHQLT Trigger: AGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATC...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR-3UTR GCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTATGTTTATACTTCTTTaGACCAACCCACGAGCGGCT | + |
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Preference number: 2 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLMFILL*TNPRAA Trigger: AGCCGCTCGTGGGTTGGTGCAAAGAAGTATAAACAT...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR-3UTR TCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTAAGCCAAGGAATTACTaGTTCTGCATTTATGGGGTG | + |
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Preference number: 2 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLKPRNY*FCIYGV Trigger: CACCCCATAAATGCAGAATCAGTAATTCCTTGGCTT...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR-3UTR GCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTCCAAGAGGGTTTCAATaGAAGAGAAACCTTTGCATC | + |
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Preference number: 2 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLPRGFQ*KRNLCI Trigger: GATGCAAAGGTTTCTCTTGCATTGAAACCCTCTTGG...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR-3UTR TCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTAATGGTAATAAGCATTaGTCCTTCCCTCGAATAAAG | + |
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Preference number: 2 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLNGNKH*SFPRIK Trigger: CTTTATTCGAGGGAAGGATCAATGCTTATTACCATT...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR-3UTR GCA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATAAAAATTCCACAGGCTTaGTCAGTATTACCAAACTTC | + |
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Preference number: 2 (lower is better) Translates to: CTQARGFIKDTTAPNNTIKIPQA*SVLPNF Trigger: GAAGTTTGGTAATACTGAGCAAGCCTGTGGAATTTT...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR CCA 72 bp | TATGTTTATACTTCTTTGCACCAACCCACGAGCGGCTaGGCATTCATTCCCAAGATGCCACTGCTTACGCGA | + |
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Preference number: 3 (lower is better) Translates to: YVYTSLHQPTSG*AFIPKMPLLTR Trigger: TCGCGTAAGCAGTGGCATCTTGGGAATGAATGCCCAGCCGCTCGTGGGTTGGTGCAAAGAAGTATAAACATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR TCA 72 bp | CAGATATCTAGTTCCAGCTCTGCCTCTACCTACCTGTaGGACACGGGGAAAGTTCTCTTAACCTTCGTAAGG | + |
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Preference number: 3 (lower is better) Translates to: QISSSSSASTYL*DTGKVLLTFVR Trigger: CCTTACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTGGAACTAGATATCTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR CCA 72 bp | CTTACGCGAAGAAGCGTGGTGGTAGTCTACCAAAAGTaGGGCTATGAAACGTGGCATGAAAATCAGCTGTTC | + |
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Preference number: 3 (lower is better) Translates to: LTRRSVVVVYQK*GYETWHENQLF Trigger: GAACAGCTGATTTTCATGCCACGTTTCATAGCCCCACTTTTGGTAGACTACCACCACGCTTCTTCGCGTAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR-3UTR CAA 90 bp | CAGCTCTGCCTCTACCTACCTGTGAGACACGGGGAAAGTTCTCTTAACCTTCGTGAAAATTCCACAGGCTaGCTCAGTATTACCAAACTT | + |
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Preference number: 3 (lower is better) Translates to: QLCLYLPVRHGESSLNLRENSTG*LSITKL Trigger: AAGTTTGGTAATACTGAGCAAGCCTGTGGAATTTTC...ACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR-3UTR CAA 90 bp | CAGCTCTGCCTCTACCTACCTGTGAGACACGGGGAAAGTTCTCTTAACCTTCGTCCCATAAAACGGGATTaGGCTAAATTTTCAAGAACT | + |
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Preference number: 3 (lower is better) Translates to: QLCLYLPVRHGESSLNLRPIKRD*AKFSRT Trigger: AGTTCTTGAAAATTTAGCCAAATCCCGTTTTATGGG...ACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR TCA 72 bp | GCACCATTTCCCCAAGGAATACCTCTTGGCATTTCCTaGATGAGTGGGATTAGCAATCTAAATAAATCATAT | + |
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Preference number: 3 (lower is better) Translates to: APFPQGIPLGIS*MSGISNLNKSY Trigger: ATATGATTTATTTAGATTGCTAATCCCACTCATTCAGGAAATGCCAAGAGGTATTCCTTGGGGAAATGGTGC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR TCA 72 bp | TCAATGCAAGAGAAACCTTTGCATCATAATTTCAAGTaGCCATATATAGTGGAGTTCCCTCTAATAACACGA | + |
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Preference number: 3 (lower is better) Translates to: SMQEKPLHHNFK*PYIVEFPLITR Trigger: TCGTGTTATTAGAGGGAACTCCACTATATATGGTCACTTGAAATTATGATGCAAAGGTTTCTCTTGCATTGA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR GCA 72 bp | TGTAATTTCAGTATTAGCAACAGTGTATTTCCCTCATaGTTACATATACAAGTAAGCAGGCAGACAAAGCAA | + |
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Preference number: 3 (lower is better) Translates to: CNFSISNSVFPS*LHIQVSRQTKQ Trigger: TTGCTTTGTCTGCCTGCTTACTTGTATATGTAAGCATGAGGGAAATACACTGTTGCTAATACTGAAATTACA 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | CAGCTCTGCCTCTACCTACCTGTGAGACACGGGGAAAGTTCTCTTAACCTTCGTGTGTCACCGGTTCGGTaGGCCACCCGCTGGGTCAGC | + |
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Preference number: 4 (lower is better) Translates to: QLCLYLPVRHGESSLNLRVSPVR*ATRWVS Trigger: GCTGACCCAGCGGGTGGCCCACCGAACCGGTGACAC...ACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCCGGTGGGCCACCCGCTaGGTCAGCAGCTCCGGGTCC | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIRWATR*VSSSGS Trigger: GGACCCGGAGCTGCTGACCCAGCGGGTGGCCCACCG...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTGCGGCGGCGGTTTGCTaGCTGGGGGCGGGGGACGAC | + |
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Preference number: 4 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLAAAVC*LGAGDD Trigger: GTCGTCCCCCGCCCCCAGTCAGCAAACCGCCGCCGC...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTCGGCGGTTTGCTGACTaGGGGCGGGGGACGACGGCG | + |
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Preference number: 4 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLRRFAD*GRGTTA Trigger: CGCCGTCGTCCCCCGCCCCCAGTCAGCAAACCGCCG...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCTCCGGGTCCCACAACTaGCTCAACCCCACACCAGCC | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEISGSHN*LNPTPA Trigger: GGCTGGTGTGGGGTTGAGTCAGTTGTGGGACCCGGA...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | CAGCTCTGCCTCTACCTACCTGTGAGACACGGGGAAAGTTCTCTTAACCTTCGTTTCCCAAGATGCCACTaGTTACGCGAAGAAGCGTGG | + |
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Preference number: 4 (lower is better) Translates to: QLCLYLPVRHGESSLNLRFPRCH*LREEAW Trigger: CCACGCTTCTTCGCGTAAGCAGTGGCATCTTGGGAA...ACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATACTTCGCCATGGCCCCTaGGGCGGACGCCATCGGAGA | + |
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Preference number: 4 (lower is better) Translates to: CTQARGFIKDTTAPNNTILRHGP*GGRHRR Trigger: TCTCCGATGGCGTCCGCCTCAGGGGCCATGGCGAAG...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATACCGAGCCCTAACGCCTaGCGCTGTGTCACCGGTTCG | + |
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Preference number: 4 (lower is better) Translates to: CTQARGFIKDTTAPNNTIPSPNA*RCVTGS Trigger: CGAACCGGTGACACAGCGGCAGGCGTTAGGGCTCGG...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | ATGAAAAACTCAGTCAACAACTGCCTCACAAGGGATAAGAAAAATTCTGCCATGAGGCGGAAGCTGCAGTaGGGTGAGATCACACCACTG | + |
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Preference number: 4 (lower is better) Translates to: MKNSVNNCLTRDKKNSAMRRKLQ*GEITPL Trigger: CAGTGGTGTGATCTCACCTCACTGCAGCTTCCGCCT...CATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGTTGTTGACTGAGTTTTTCAT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCATTATTTTTCTTGGCTaGGTGCGGCAGCTCACACCT | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIIIFLG*VRQLTP Trigger: AGGTGTGAGCTGCCGCACCCAGCCAAGAAAAATAAT...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | CAGCTCTGCCTCTACCTACCTGTGAGACACGGGGAAAGTTCTCTTAACCTTCGTTTCTTCTCAATTTTCTaGGAGATAAAGGGGGAAAGC | + |
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Preference number: 4 (lower is better) Translates to: QLCLYLPVRHGESSLNLRFFSIF*EIKGES Trigger: GCTTTCCCCCTTTATCTCCCAGAAAATTGAGAAGAA...ACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATACAACCCACGAGCGGCTaGGCATTCATTCCCAAGATG | + |
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Preference number: 4 (lower is better) Translates to: CTQARGFIKDTTAPNNTIQPTSG*AFIPKM Trigger: CATCTTGGGAATGAATGCCCAGCCGCTCGTGGGTTG...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | CAGCTCTGCCTCTACCTACCTGTGAGACACGGGGAAAGTTCTCTTAACCTTCGTAGTCAATATTTGACTTaGACCAGGACACAAACTATG | + |
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Preference number: 4 (lower is better) Translates to: QLCLYLPVRHGESSLNLRSQYLT*TRTQTM Trigger: CATAGTTTGTGTCCTGGTCCAAGTCAAATATTGACT...ACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | CAGCTCTGCCTCTACCTACCTGTGAGACACGGGGAAAGTTCTCTTAACCTTCGTGTACTCCATGTAAAGTaGAATCAAAGGCATCACAAA | + |
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Preference number: 4 (lower is better) Translates to: QLCLYLPVRHGESSLNLRVLHVK*NQRHHK Trigger: TTTGTGATGCCTTTGATTCCACTTTACATGGAGTAC...ACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCAAGCAAGAGACTATCTaGCATCAGAATTCAAGTCCC | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIKQETI*HQNSSP Trigger: GGGACTTGAATTCTGATGGCAGATAGTCTCTTGCTT...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCAAAAATTGCCTGAAGTaGACACACTGTGTCAGAAGG | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIKNCLK*THCVRR Trigger: CCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTT...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCAATCAGAGCATCTCCTaGTATGAACAACAGTTAAGC | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEINQSIS*YEQQLS Trigger: GCTTAACTGTTGTTCATATCAGGAGATGCTCTGATT...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCAAAGAAACAGCACTCTaGATGCTTCACTCTACAAGA | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIKETAL*MLHSTR Trigger: TCTTGTAGAGTGAAGCATGCAGAGTGCTGTTTCTTT...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTGTAGTCTACCAAAAGTaGGGCTATGAAACGTGGCAT | + |
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Preference number: 4 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLVVYQK*GYETWH Trigger: ATGCCACGTTTCATAGCCCCACTTTTGGTAGACTAC...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCAATGGTAATAAGCATTaGTCCTTCCCTCGAATAAAG | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEINGNKH*SFPRIK Trigger: CTTTATTCGAGGGAAGGATCAATGCTTATTACCATT...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTTTTCCAAAAATTGCCTaGAGTGCACACACTGTGTCA | + |
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Preference number: 4 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLFPKIA*SAHTVS Trigger: TGACACAGTGTGTGCACTTCAGGCAATTTTTGGAAA...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCAACCACCTTTTGCTTTaGGAAATACATGATGGACAA | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEINHLLL*EIHDGQ Trigger: TTGTCCATCATGTATTTCTCAAAGCAAAAGGTGGTT...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATAGATGGAGCACAGCCATaGTGTACACATCAACTCACT | + |
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Preference number: 4 (lower is better) Translates to: CTQARGFIKDTTAPNNTIDGAQP*CTHQLT Trigger: AGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATC...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCCTCAAATCGCCTTTTTaGGATGACAGCTCATTTATT | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEILKSPF*DDSSFI Trigger: AATAAATGAGCTGTCATCGCAAAAAGGCGATTTGAG...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | ATGAAAAACTCAGTCAACAACTGCCTCACAAGGGATAAGAAAAATTCTGCCATGGAGTATTATTTTTCTTaGCTGGGTGCGGCAGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: MKNSVNNCLTRDKKNSAMEYYFS*LGAAAH Trigger: GTGAGCTGCCGCACCCAGCCAAGAAAAATAATACTC...CATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGTTGTTGACTGAGTTTTTCAT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTATCGCCTTTTTGCGATaGCAGCTCATTTATTCACAA | + |
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Preference number: 4 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLIAFLR*QLIYSQ Trigger: TTGTGAATAAATGAGCTGTCATCGCAAAAAGGCGAT...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCTGCAAGAGAAACCTTTaGATCATAATTTCAAGTGAC | + |
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Preference number: 4 (lower is better) Translates to: WGKSDGAQPCCTHQLTEICKRNL*IIISSD Trigger: GTCACTTGAAATTATGATGCAAAGGTTTCTCTTGCA...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | ATGAAAAACTCAGTCAACAACTGCCTCACAAGGGATAAGAAAAATTCTGCCATGCATTCATTCCCAAGATaGCACTGCTTACGCGAAGAA | + |
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Preference number: 4 (lower is better) Translates to: MKNSVNNCLTRDKKNSAMHSFPR*HCLREE Trigger: TTCTTCGCGTAAGCAGTGGCATCTTGGGAATGAATG...CATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGTTGTTGACTGAGTTTTTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATAATGTTTATACTTCTTTaGACCAACCCACGAGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: CTQARGFIKDTTAPNNTIMFILL*TNPRAA Trigger: AGCCGCTCGTGGGTTGGTGCAAAGAAGTATAAACAT...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATATGGGGCTATGAAACGTaGCATGAAAATCAGCTGTTC | + |
|
Preference number: 4 (lower is better) Translates to: CTQARGFIKDTTAPNNTIWGYET*HENQLF Trigger: GAACAGCTGATTTTCATGCCACGTTTCATAGCCCCA...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CCA 90 bp | ATGAAAAACTCAGTCAACAACTGCCTCACAAGGGATAAGAAAAATTCTGCCATGTTAGGTCAGTATCTCTaGGGGTGCTATTCAAGCAAC | + |
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Preference number: 4 (lower is better) Translates to: MKNSVNNCLTRDKKNSAMLGQYL*GCYSSN Trigger: GTTGCTTGAATAGCACCCCCAGAGATACTGACCTAA...CATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGTTGTTGACTGAGTTTTTCAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATACCAAGAGGGTTTCAATaGAAGAGAAACCTTTGCATC | + |
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Preference number: 4 (lower is better) Translates to: CTQARGFIKDTTAPNNTIPRGFQ*KRNLCI Trigger: GATGCAAAGGTTTCTCTTGCATTGAAACCCTCTTGG...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR CAA 72 bp | GCCATACTTACTGTTTGTGAGGAGTCAATATTTGACTaGGACCAGGACACAAACTATGTCCTTCATATGGTA | + |
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Preference number: 4 (lower is better) Translates to: AILTVCEESIFD*DQDTNYVLHMV Trigger: TACCATATGAAGGACATAGTTTGTGTCCTGGTCCAAGTCAAATATTGACTCCTCACAAACAGTAAGTATGGC 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | ATGAAAAACTCAGTCAACAACTGCCTCACAAGGGATAAGAAAAATTCTGCCATGATTCAGTGTCACATATaGACTCAAGGCCTTAGTTAC | + |
|
Preference number: 4 (lower is better) Translates to: MKNSVNNCLTRDKKNSAMIQCHI*TQGLSY Trigger: GTAACTAAGGCCTTGAGTTCATATGTGACACTGAAT...CATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGTTGTTGACTGAGTTTTTCAT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR CAA 72 bp | AGGAATGTTCATGTTGGTTTTGTTCACGGACTGAGATaGTTAGTGGGCAGGAGTTTACTTCTTCTCAATTTT | + |
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Preference number: 4 (lower is better) Translates to: RNVHVGFVHGLR*LVGRSLLLLNF Trigger: AAAATTGAGAAGAAGTAAACTCCTGCCCACTAACAATCTCAGTCCGTGAACAAAACCAACATGAACATTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATAGAGTTAAATCTTCCTTaGGAACATACTCTCAGAACT | + |
|
Preference number: 4 (lower is better) Translates to: CTQARGFIKDTTAPNNTIELNLP*EHTLRT Trigger: AGTTCTGAGAGTATGTTCTCAAGGAAGATTTAACTC...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR TCA 90 bp | ATGAAAAACTCAGTCAACAACTGCCTCACAAGGGATAAGAAAAATTCTGCCATGGTTCCCCTGTATTGCTaGAGTCAAGTCTTAATTAAA | + |
|
Preference number: 4 (lower is better) Translates to: MKNSVNNCLTRDKKNSAMVPLYC*SQVLIK Trigger: TTTAATTAAGACTTGACTTCAGCAATACAGGGGAAC...CATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGTTGTTGACTGAGTTTTTCAT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR GCA 90 bp | ATGAAAAACTCAGTCAACAACTGCCTCACAAGGGATAAGAAAAATTCTGCCATGATATTTTCCAAAAATTaGCTGAAGTGCACACACTGT | + |
|
Preference number: 4 (lower is better) Translates to: MKNSVNNCLTRDKKNSAMIFSKN*LKCTHC Trigger: ACAGTGTGTGCACTTCAGGCAATTTTTGGAAAATAT...CATGGCAGAATTTTTCTTATCCCTTGTGAGGCAGTTGTTGACTGAGTTTTTCAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| 3UTR CAA 72 bp | TACTTGAATGTCTCTAAAGTGGTAGAAGATCACAAGTaGGGAATACCCTCAAAAACTATATTTTTACCCTAC | + |
|
Preference number: 4 (lower is better) Translates to: YLNVSKVVEDHK*GIPSKTIFLPY Trigger: GTAGGGTAAAAATATAGTTTTTGAGGGTATTCCCAACTTGTGATCTTCTACCACTTTAGAGACATTCAAGTA 35% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS TCA 90 bp | CACTCCCAAGGGGTCCCGCGCCGTGCCCTAGCCTCCCCGCGCCGCTaGCAGCCGGGAGCGGGCGACAGACGCAGCTTGCGCCACCTCCAG | + |
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Preference number: 5 (lower is better) Translates to: HSQGVPRRALASPRR*QPGAGDRRSLRHLQ Trigger: CTGGAGGTGGCGCAAGCTGCGTCTGTCGCCCGCTCCCGGCTGTCAGCGGCGCGGGGAGGCTAGGGCACGGCGCGGGACCCCTTGGGAGTG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000578314.1 |
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| CDS GCA 90 bp | AGCTCTAGGACGAGGCCAGGCTCGCGGCTCCCGAGCCCTAACGCCTaGCGCTGTGTCACCGGTTCGGTGGGCCACCCGCTGGGTCAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: SSRTRPGSRLPSPNA*RCVTGSVGHPLGQQ Trigger: CTGCTGACCCAGCGGGTGGCCCACCGAACCGGTGACACAGCGGCAGGCGTTAGGGCTCGGGAGCCGCGAGCCTGGCCTCGTCCTAGAGCT 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000340541.4 ENST00000400000.7 ENST00000577901.5 ENST00000585042.5 |
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| CDS TCA 90 bp | GTTCGGTGGGCCACCCGCTGGGTCAGCAGCTCCGGGTCCCACAACTaGCTCAACCCCACACCAGCCGCCACGGCCACGCGCACTTGCGAG | + |
|
Preference number: 5 (lower is better) Translates to: VRWATRWVSSSGSHN*LNPTPAATATRTCE Trigger: CTCGCAAGTGCGCGTGGCCGTGGCGGCTGGTGTGGGGTTGAGTCAGTTGTGGGACCCGGAGCTGCTGACCCAGCGGGTGGCCCACCGAAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS TCA 90 bp | GCGCGTCCTACACCTGACGGCCGAGTTCTAAACCTGGCGGAAAGGTaGCAAGCGACGCCCTCCGCGGAACCCGAGGGCCGGCTGCAGCGA | + |
|
Preference number: 5 (lower is better) Translates to: ARPTPDGRVLNLAER*QATPSAEPEGRLQR Trigger: TCGCTGCAGCCGGCCCTCGGGTTCCGCGGAGGGCGTCGCTTGTCACCTTTCCGCCAGGTTTAGAACTCGGCCGTCAGGTGTAGGACGCGC 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000578314.1 |
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| CDS TCA 90 bp | GTGCTGTGTCGGGAGGGGCAGGGTTCTGGGCCTTTCCAGTCACAGTaGAGAGCTTACACTAAAGCAAAGAGGGGTGATAAACAGATGCTT | + |
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Preference number: 5 (lower is better) Translates to: VLCREGQGSGPFQSQ*RAYTKAKRGDKQML Trigger: AAGCATCTGTTTATCACCCCTCTTTGCTTTAGTGTAAGCTCTTCACTGTGACTGGAAAGGCCCAGAACCCTGCCCCTCCCGACACAGCAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS-3UTR CAA 90 bp | CAGCTCTGCCTCTACCTACCTGTGAGACACGGGGAAAGTTCTCTTAACCTTCGTGTTCACGGACTGAGATaGTTAGTGGGCAGGAGTTTA | + |
|
Preference number: 5 (lower is better) Translates to: QLCLYLPVRHGESSLNLRVHGLR*LVGRSL Trigger: TAAACTCCTGCCCACTAACAATCTCAGTCCGTGAAC...ACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS TCA 90 bp | GTGATAACTGGCAGGTGTTGCAACTGTGTTGTTGATGCTGCTCATTaGAGTGACAGTCGGAGCATTCCCTGGTGGAGTTATACCCAATTT | + |
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Preference number: 5 (lower is better) Translates to: VITGRCCNCVVDAAH*SDSRSIPWWSYTQF Trigger: AAATTGGGTATAACTCCACCAGGGAATGCTCCGACTGTCACTTCAATGAGCAGCATCAACAACACAGTTGCAACACCTGCCAGTTATCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000340541.4 |
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| CDS TCA 90 bp | GTGAAGCTGCCTGGCTTGGCTGAAACACACTGGTGCACTCTTTATTaGTCACCCTGCCATTGTTATCGGCTAATGTCACAGAACCTTTAT | + |
|
Preference number: 5 (lower is better) Translates to: VKLPGLAETHWCTLY*SPCHCYRLMSQNLY Trigger: ATAAAGGTTCTGTGACATTAGCCGATAACAATGGCAGGGTGATCAATAAAGAGTGCACCAGTGTGTTTCAGCCAAGCCAGGCAGCTTCAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583475.1 |
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| CDS-3UTR CAA 90 bp | CAAAAATTGCCTGAAGTGCACACACTGTGTCAGAAGGGCAAGACAAACTTTCTTTCTGTGAAGGGGCCTTaGAATTTGAGGTCTGTGGGC | + |
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Preference number: 5 (lower is better) Translates to: QKLPEVHTLCQKGKTNFLSVKGP*NLRSVG Trigger: GCCCACAGACCTCAAATTCAAAGGCCCCTTCACAGA...AAGAAAGTTTGTCTTGCCCTTCTGACACAGTGTGTGCACTTCAGGCAATTTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS TCA 90 bp | ATCATGGTAAGTAAGTTTCACCTCACGGGACAGCTAAAAGATGAGTaGAGCTGCCTGGCTTGGCTGAAACACACTGGTGCACTCTTTATT | + |
|
Preference number: 5 (lower is better) Translates to: IMVSKFHLTGQLKDE*SCLAWLKHTGALFI Trigger: AATAAAGAGTGCACCAGTGTGTTTCAGCCAAGCCAGGCAGCTTCACTCATCTTTTAGCTGTCCCGTGAGGTGAAACTTACTTACCATGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000583475.1 |
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| CDS-3UTR CAA 90 bp | CAGCTCTGCCTCTACCTACCTGTGAGACACGGGGAAAGTTCTCTTAACCTTCGTAGAGTTAAATCTTCCTaGAGAACATACTCTCAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: QLCLYLPVRHGESSLNLRRVKSS*RTYSQN Trigger: GTTCTGAGAGTATGTTCTCAAGGAAGATTTAACTCT...ACGAAGGTTAAGAGAACTTTCCCCGTGTCTCACAGGTAGGTAGAGGCAGAGCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCATAACTAGAAGGGAATaGTCAAGAGGCCAGGCCAAT | + |
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Preference number: 5 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIITRRE*SRGQAN Trigger: ATTGGCCTGGCCTCTTGACAATTCCCTTCTAGTTAT...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCGTGAGGAGTCAATATTaGACTTGGACCAGGACACAA | + |
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Preference number: 5 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIVRSQY*TWTRTQ Trigger: TTGTGTCCTGGTCCAAGTCAAATATTGACTCCTCAC...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCTTCAGTGGAACAGCTTaGCTAGGTTCCATATCATTC | + |
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Preference number: 5 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIFSGTA*LGSISF Trigger: GAATGATATGGAACCTAGCAAAGCTGTTCCACTGAA...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCGAAAATTCCACAGGCTaGCTCAGTATTACCAAACTT | + |
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Preference number: 5 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIENSTG*LSITKL Trigger: AAGTTTGGTAATACTGAGCAAGCCTGTGGAATTTTC...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCGTAGAAGATCACAAGTaGGGAATACCCTCAAAAACT | + |
|
Preference number: 5 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIVEDHK*GIPSKT Trigger: AGTTTTTGAGGGTATTCCCAACTTGTGATCTTCTAC...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCGAGTCAATATTTGACTaGGACCAGGACACAAACTAT | + |
|
Preference number: 5 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIESIFD*DQDTNY Trigger: ATAGTTTGTGTCCTGGTCCAAGTCAAATATTGACTC...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATATATGTTTATACTTCTTaGCACCAACCCACGAGCGGC | + |
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Preference number: 5 (lower is better) Translates to: CTQARGFIKDTTAPNNTIYVYTS*HQPTSG Trigger: GCCGCTCGTGGGTTGGTGCAAAGAAGTATAAACATA...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCTATATTTTCCAAAAATaGCCTGAAGTGCACACACTG | + |
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Preference number: 5 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIYIFQK*PEVHTL Trigger: CAGTGTGTGCACTTCAGGCAATTTTTGGAAAATATA...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGGGGTAAATCAGATGGAGCACAGCCATGCTGTACACATCAACTCACTGAAATCAAAGGCATCACAAAATaGCCATACTTACTGTTTGTG | + |
|
Preference number: 5 (lower is better) Translates to: WGKSDGAQPCCTHQLTEIKGITK*PYLLFV Trigger: CACAAACAGTAAGTATGGCAATTTTGTGATGCCTTT...GATTTCAGTGAGTTGATGTGTACAGCATGGCTGTGCTCCATCTGATTTACCCCA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS GCA 90 bp | GTTTGCTTTAATTCACGTGATTCAACATCACAGGAGCACTTAGCATaGTTTGAAGACTATGAGCCCCAAAATCTTAATCCTCACCAACAT | + |
|
Preference number: 5 (lower is better) Translates to: VCFNSRDSTSQEHLA*FEDYEPQNLNPHQH Trigger: ATGTTGGTGAGGATTAAGATTTTGGGGCTCATAGTCTTCAAAGCATGCTAAGTGCTCCTGTGATGTTGAATCACGTGAATTAAAGCAAAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS-3UTR CAA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATATTCACTTGTACTAGATaGTATGTAGCTAAACACTGG | + |
|
Preference number: 5 (lower is better) Translates to: CTQARGFIKDTTAPNNTIFTCTR*YVAKHW Trigger: CCAGTGTTTAGCTACATACAATCTAGTACAAGTGAA...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATACCCATAAAACGGGATTaGGCTAAATTTTCAAGAACT | + |
|
Preference number: 5 (lower is better) Translates to: CTQARGFIKDTTAPNNTIPIKRD*AKFSRT Trigger: AGTTCTTGAAAATTTAGCCAAATCCCGTTTTATGGG...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS-3UTR CAA 90 bp | TGCACACAAGCAAGAGGTTTTATAAAAGATACCACAGCGCCCAATAACACAATATTAAGTTCCCCTGTATaGCTGAAGTCAAGTCTTAAT | + |
|
Preference number: 5 (lower is better) Translates to: CTQARGFIKDTTAPNNTILSSPV*LKSSLN Trigger: ATTAAGACTTGACTTCAGCAATACAGGGGAACTTAA...TATTGTGTTATTGGGCGCTGTGGTATCTTTTATAAAACCTCTTGCTTGTGTGCA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS TCA 72 bp | GGGGTCCCGCGCCGTGCCCTAGCCTCCCCGCGCCGCTaGCAGCCGGGAGCGGGCGACAGACGCAGCTTGCGC | + |
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Preference number: 6 (lower is better) Translates to: GVPRRALASPRR*QPGAGDRRSLR Trigger: GCGCAAGCTGCGTCTGTCGCCCGCTCCCGGCTGTCAGCGGCGCGGGGAGGCTAGGGCACGGCGCGGGACCCC 79% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000578314.1 |
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| CDS TCA 72 bp | GCCACCCGCTGGGTCAGCAGCTCCGGGTCCCACAACTaGCTCAACCCCACACCAGCCGCCACGGCCACGCGC | + |
|
Preference number: 6 (lower is better) Translates to: ATRWVSSSGSHN*LNPTPAATATR Trigger: GCGCGTGGCCGTGGCGGCTGGTGTGGGGTTGAGTCAGTTGTGGGACCCGGAGCTGCTGACCCAGCGGGTGGC 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000400000.7 |
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| CDS CCA 72 bp | CGAGCCCTAACGCCTGCCGCTGTGTCACCGGTTCGGTaGGCCACCCGCTGGGTCAGCAGCTCCGGGTCCCAC | + |
|
Preference number: 6 (lower is better) Translates to: RALTPAAVSPVR*ATRWVSSSGSH Trigger: GTGGGACCCGGAGCTGCTGACCCAGCGGGTGGCCCACCGAACCGGTGACACAGCGGCAGGCGTTAGGGCTCG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000340541.4 ENST00000400000.7 ENST00000577901.5 ENST00000585042.5 |
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| CDS TCA 72 bp | ACACCTGACGGCCGAGTTCTAAACCTGGCGGAAAGGTaGCAAGCGACGCCCTCCGCGGAACCCGAGGGCCGG | + |
|
Preference number: 6 (lower is better) Translates to: TPDGRVLNLAER*QATPSAEPEGR Trigger: CCGGCCCTCGGGTTCCGCGGAGGGCGTCGCTTGTCACCTTTCCGCCAGGTTTAGAACTCGGCCGTCAGGTGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000578314.1 |
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| CDS TCA 72 bp | CCAAGGACTCTCCACCTCCCCGGCGCGTCCTACACCTaGCGGCCGAGTTCTAAACCTGGCGGAAAGGTGACA | + |
|
Preference number: 6 (lower is better) Translates to: PRTLHLPGASYT*RPSSKPGGKVT Trigger: TGTCACCTTTCCGCCAGGTTTAGAACTCGGCCGTCAGGTGTAGGACGCGCCGGGGAGGTGGAGAGTCCTTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000578314.1 |
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| CDS GCA 72 bp | GGAAGCGGAGGTTGCAATGAGACGAGATCGTGCCACTaGACTCCAGCCCAGGTGAGAGTGAGACCCTATCTC | + |
|
Preference number: 6 (lower is better) Translates to: GSGGCNETRSCH*TPAQVRVRPYL Trigger: GAGATAGGGTCTCACTCTCACCTGGGCTGGAGTGCAGTGGCACGATCTCGTCTCATTGCAACCTCCGCTTCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS GCA 72 bp | GAGCTTACACTAAAGCAAAGAGGGGTGATAAACAGATaGTTCTCCAGCATACTCCAGCCCAATGCTGCCCCA | + |
|
Preference number: 6 (lower is better) Translates to: ELTLKQRGVINR*FSSILQPNAAP Trigger: TGGGGCAGCATTGGGCTGGAGTATGCTGGAGAAGCATCTGTTTATCACCCCTCTTTGCTTTAGTGTAAGCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS TCA 72 bp | CCTGGCTTGGCTGAAACACACTGGTGCACTCTTTATTaGTCACCCTGCCATTGTTATCGGCTAATGTCACAG | + |
|
Preference number: 6 (lower is better) Translates to: PGLAETHWCTLY*SPCHCYRLMSQ Trigger: CTGTGACATTAGCCGATAACAATGGCAGGGTGATCAATAAAGAGTGCACCAGTGTGTTTCAGCCAAGCCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583475.1 |
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| CDS TCA 72 bp | TACTCCAGCCCAATGCTGCCCCACGCAAATACAATGTaGGCTTCAAATGTGAGCCCCGTATGTAAAGTTAAA | + |
|
Preference number: 6 (lower is better) Translates to: YSSPMLPHANTM*ASNVSPVCKVK Trigger: TTTAACTTTACATACGGGGCTCACATTTGAAGCTCACATTGTATTTGCGTGGGGCAGCATTGGGCTGGAGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS GCA 72 bp | ATGACGTCAACAAAATCCATTGAAGGTCATTTTCCGTaGTCTGGTTGTGCAATTCAAATAAGGTTCTGGGGG | + |
|
Preference number: 6 (lower is better) Translates to: MTSTKSIEGHFP*SGCAIQIRFWG Trigger: CCCCCAGAACCTTATTTGAATTGCACAACCAGAGCACGGAAAATGACCTTCAATGGATTTTGTTGACGTCAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS CCA 72 bp | TTTCCGTGCTCTGGTTGTGCAATTCAAATAAGGTTCTaGGGGGTAGGGGGATATTATCGTAATCATTCCAAT | + |
|
Preference number: 6 (lower is better) Translates to: FPCSGCAIQIRF*GVGGYYRNHSN Trigger: ATTGGAATGATTACGATAATATCCCCCTACCCCCCAGAACCTTATTTGAATTGCACAACCAGAGCACGGAAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS TCA 72 bp | ACATCAGTATTTTACACTCAACAGCACAGCTCAATTTaGACAAATCCCATTTCAGTGCTCAACAGCCCTAGG | + |
|
Preference number: 6 (lower is better) Translates to: TSVFYTQQHSSI*TNPISVLNSPR Trigger: CCTAGGGCTGTTGAGCACTGAAATGGGATTTGTTCAAATTGAGCTGTGCTGTTGAGTGTAAAATACTGATGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS GCA 72 bp | AAGAATACAGTGAAGCCGAAACACATTTCAAAAGTGTaGCCAATAAGTTATATCACATACTACCTAGGCCCC | + |
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Preference number: 6 (lower is better) Translates to: KNTVKPKHISKV*PISYITYYLGP Trigger: GGGGCCTAGGTAGTATGTGATATAACTTATTGGGCACACTTTTGAAATGTGTTTCGGCTTCACTGTATTCTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS GCA 72 bp | AATTCACGTGATTCAACATCACAGGAGCACTTAGCATaGTTTGAAGACTATGAGCCCCAAAATCTTAATCCT | + |
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Preference number: 6 (lower is better) Translates to: NSRDSTSQEHLA*FEDYEPQNLNP Trigger: AGGATTAAGATTTTGGGGCTCATAGTCTTCAAAGCATGCTAAGTGCTCCTGTGATGTTGAATCACGTGAATT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS TCA 72 bp | AATGAAAGTATGCTGAATGACGTCAACAAAATCCATTaGAGGTCATTTTCCGTGCTCTGGTTGTGCAATTCA | + |
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Preference number: 6 (lower is better) Translates to: NESMLNDVNKIH*RSFSVLWLCNS Trigger: TGAATTGCACAACCAGAGCACGGAAAATGACCTTCAATGGATTTTGTTGACGTCATTCAGCATACTTTCATT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000577539.1 |
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| CDS CAA 72 bp | AACACACTGGTGCACTCTTTATTGATCACCCTGCCATaGTTATCGGCTAATGTCACAGAACCTTTATATAAT | + |
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Preference number: 6 (lower is better) Translates to: NTLVHSLLITLP*LSANVTEPLYN Trigger: ATTATATAAAGGTTCTGTGACATTAGCCGATAACAATGGCAGGGTGATCAATAAAGAGTGCACCAGTGTGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000583475.1 |
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