RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for USP9X (Homo sapiens)

Ensembl gene IDs: ENSG00000124486

Ensembl transcript IDs: ENST00000324545.8, ENST00000324545.9, ENST00000378308.7, ENST00000487625.1

Found 200 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGAGCTGATCCAACTGCCATGAGGCAGGCAACACTGGTTGCAGAGTaGAGTGGGTGTAACAAGAAAATTAACTTTTGTAGTTTGTGTAGA +
Preference number: 1 (lower is better)
Translates to: GADPTAMRQATLVAE*SGCNKKINFCSLCR
Trigger: TCTACACAAACTACAAAAGTTAATTTTCTTGTTACACCCACTGCACTCTGCAACCAGTGTTGCCTGCCTCATGGCAGTTGGATCAGCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR GCA 90 bp TTGGTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTaGACTGAAATACTTAGATACAATAGGGCAAAAGCCCTTGTTCAC +
Preference number: 1 (lower is better)
Translates to: LVEGLETAATWFNKL*TEILRYNRAKALVH
Trigger: GTGAACAAGGGCTTTTGCCCTATTGTATCTAAGTATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCACCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR CCA 90 bp AACATGAAAGTTCAGTTGGTGGAGGGCTTAGAAACAGCAGCAACATaGTTTAACAAGTTGTGCACTGAAATACTTAGATACAATAGGGCA +
Preference number: 1 (lower is better)
Translates to: NMKVQLVEGLETAAT*FNKLCTEILRYNRA
Trigger: TGCCCTATTGTATCTAAGTATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCACCAACTGAACTTTCATGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACACAAGCCCCTCACCTaGCACAAGGGGGCTTGTAAC +
Preference number: 2 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKHKPLT*HKGACN
Trigger: GTTACAAGCCCCCTTGTGCCAGGTGAGGGGCTTGTG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGGGCGGCCAGATCACCTaGGGTCAGGAGTTCAAGACC +
Preference number: 2 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEGGQIT*GQEFKT
Trigger: GGTCTTGAACTCCTGACCTCAGGTGATCTGGCCGCC...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR GCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAACTGTAAGGCCTGGGTaGACAGTCTTGATGGAACCA +
Preference number: 2 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKTVRPG*TVLMEP
Trigger: TGGTTCCATCAAGACTGTGCACCCAGGCCTTACAGT...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGCTGATCCAACTGCCATaGGGCAGGCAACACTGGTTG +
Preference number: 2 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQELIQLP*GRQHWL
Trigger: CAACCAGTGTTGCCTGCCTCATGGCAGTTGGATCAG...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR GCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACCTGAATCAGTGTCATaGCTAGGCATGCTATGCACA +
Preference number: 2 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKPESVS*LGMLCT
Trigger: TGTGCATAGCATGCCTAGGCATGACACTGATTCAGG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACTGGGTGCACAGTCTTaGTGGAACCAGTTAATTATG +
Preference number: 2 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKLGAQS*WNQLIM
Trigger: CATAATTAACTGGTTCCATCAAGACTGTGCACCCAG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCAACTATTGGTGTGGCTaGCATGGATGGGCTCTGTTT +
Preference number: 2 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSNYWCG*HGWALF
Trigger: AAACAGAGCCCATCCATGTCAGCCACACCAATAGTT...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATATCTCCTCTCAGATGGTaGGATGGTACACCTAACTCA +
Preference number: 2 (lower is better)
Translates to: VEGLETAATWFNKLCTEISPLRW*DGTPNS
Trigger: TGAGTTAGGTGTACCATCTCACCATCTGAGAGGAGA...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR GCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAACTGTAAGGCCTGGGTaGACAGTCTTGATGGAACCA +
Preference number: 2 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSTVRPG*TVLMEP
Trigger: TGGTTCCATCAAGACTGTGCACCCAGGCCTTACAGT...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR GCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATACCTGAATCAGTGTCATaGCTAGGCATGCTATGCACA +
Preference number: 2 (lower is better)
Translates to: VEGLETAATWFNKLCTEIPESVS*LGMLCT
Trigger: TGTGCATAGCATGCCTAGGCATGACACTGATTCAGG...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAGACACAGAAAAAGGTTaGACTGTAAGGCCTGGGTGC +
Preference number: 2 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSDTEKG*TVRPGC
Trigger: GCACCCAGGCCTTACAGTCCAACCTTTTTCTGTGTC...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATACTGGGTGCACAGTCTTaGTGGAACCAGTTAATTATG +
Preference number: 2 (lower is better)
Translates to: VEGLETAATWFNKLCTEILGAQS*WNQLIM
Trigger: CATAATTAACTGGTTCCATCAAGACTGTGCACCCAG...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATATGCAAACACCGTGTGTaGCTTTCACTCAAAGTATCG +
Preference number: 2 (lower is better)
Translates to: VEGLETAATWFNKLCTEICKHRV*LSLKVS
Trigger: CGATACTTTGAGTGAAAGTCACACACGGTGTTTGCA...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGGACACAGAAAAAGGTTaGACTGTAAGGCCTGGGTGC +
Preference number: 2 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEDTEKG*TVRPGC
Trigger: GCACCCAGGCCTTACAGTCCAACCTTTTTCTGTGTC...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR CAA 90 bp CAGTTGGTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTaGTGCACTGAAATACTTAGATACAATAGGGCAAAAGCCCTTGTT +
Preference number: 2 (lower is better)
Translates to: QLVEGLETAATWFNK*CTEILRYNRAKALV
Trigger: AACAAGGGCTTTTGCCCTATTGTATCTAAGTATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCACCAACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCCTGCAGATAAGACAGTaGATAAACTCTCCACTCCAT +
Preference number: 2 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSLQIRQ*INSPLH
Trigger: ATGGAGTGGAGAGTTTATTCACTGTCTTATCTGCAG...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACCTAGAAGCACAGGTTaGCTATACAGTACTACAAAT +
Preference number: 2 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKPRSTG*LYSTTN
Trigger: ATTTGTAGTACTGTATAGTCAACCTGTGCTTCTAGG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR GCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACACTTCTCGGACAACTaGTGTCATTATGGTAACTTT +
Preference number: 2 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKHFSDN*CHYGNF
Trigger: AAAGTTACCATAATGACAGCAGTTGTCCGAGAAGTG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATACCTAGAAGCACAGGTTaGCTATACAGTACTACAAAT +
Preference number: 2 (lower is better)
Translates to: VEGLETAATWFNKLCTEIPRSTG*LYSTTN
Trigger: ATTTGTAGTACTGTATAGTCAACCTGTGCTTCTAGG...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR GCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGACACTGGTTGCAGAGTaGAGTGGGTGTAACAAGAAA +
Preference number: 2 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQETLVAE*SGCNKK
Trigger: TTTCTTGTTACACCCACTGCACTCTGCAACCAGTGT...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR GCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAGCTCAATTTTGTTTCTaGTTTGTTCAGTTCCAAGTG +
Preference number: 2 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKAQFCF*FVQFQV
Trigger: CACTTGGAACTGAACAAAGCAGAAACAAAATTGAGC...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR TCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGCTGCAGATAAGACAGTaGATAAACTCTCCACTCCAT +
Preference number: 2 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQELQIRQ*INSPLH
Trigger: ATGGAGTGGAGAGTTTATTCACTGTCTTATCTGCAG...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATATATGCTCCAGCATCTTaGCATAGCAAATTTTTGCAT +
Preference number: 2 (lower is better)
Translates to: VEGLETAATWFNKLCTEIYAPAS*HSKFLH
Trigger: ATGCAAAAATTTGCTATGCCAAGATGCTGGAGCATA...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATATGTCATTTAGAATTCTaGGGGCTGTTTCTTTCAAAG +
Preference number: 2 (lower is better)
Translates to: VEGLETAATWFNKLCTEICHLEF*GLFLSK
Trigger: CTTTGAAAGAAACAGCCCCCAGAATTCTAAATGACA...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR GCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATACACTGGTTGCAGAGTaGAGTGGGTGTAACAAGAAA +
Preference number: 2 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHTLVAE*SGCNKK
Trigger: TTTCTTGTTACACCCACTGCACTCTGCAACCAGTGT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR GCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAAAATCACCATTATGTTaGTCTTGCAACAACATGCAT +
Preference number: 2 (lower is better)
Translates to: VEGLETAATWFNKLCTEIKSPLC*SCNNMH
Trigger: ATGCATGTTGTTGCAAGAGCAACATAATGGTGATTT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTATGCTCCAGCATCTTaGCATAGCAAATTTTTGCAT +
Preference number: 2 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEYAPAS*HSKFLH
Trigger: ATGCAAAAATTTGCTATGCCAAGATGCTGGAGCATA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAAGACACAGAAAAAGGTaGGACTGTAAGGCCTGGGTG +
Preference number: 3 (lower is better)
Translates to: VEGLETAATWFNKLCTEIRHRKR*DCKAWV
Trigger: CACCCAGGCCTTACAGTCCAACCTTTTTCTGTGTCT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR GCA 72 bp CCAACTGCCATGAGGCAGGCAACACTGGTTGCAGAGTaGAGTGGGTGTAACAAGAAAATTAACTTTTGTAGT +
Preference number: 3 (lower is better)
Translates to: PTAMRQATLVAE*SGCNKKINFCS
Trigger: ACTACAAAAGTTAATTTTCTTGTTACACCCACTGCACTCTGCAACCAGTGTTGCCTGCCTCATGGCAGTTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACCTGGGTGCACAGTCTaGATGGAACCAGTTAATTAT +
Preference number: 3 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKPGCTV*MEPVNY
Trigger: ATAATTAACTGGTTCCATCAAGACTGTGCACCCAGG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAATTGCTCATAGCAAAATaGACTCCAGTGGCAAAGAAT +
Preference number: 3 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKLLIAK*TPVAKN
Trigger: ATTCTTTGCCACTGGAGTCAATTTTGCTATGAGCAA...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAGTTACCAGCCTTACATaGCTCATAGCAAAATTGACT +
Preference number: 3 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKVTSLT*LIAKLT
Trigger: AGTCAATTTTGCTATGAGCAATGTAAGGCTGGTAAC...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAATAGGGCAAAAGCCCTaGTTCACATGGTTTTACAAC +
Preference number: 3 (lower is better)
Translates to: VEGLETAATWFNKLCTEIIGQKP*FTWFYN
Trigger: GTTGTAAAACCATGTGAACAAGGGCTTTTGCCCTAT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCTTGCTCATAGCAAAATaGACTCCAGTGGCAAAGAAT +
Preference number: 3 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSLLIAK*TPVAKN
Trigger: ATTCTTTGCCACTGGAGTCAATTTTGCTATGAGCAA...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAGTTACCAGCCTTACATaGCTCATAGCAAAATTGACT +
Preference number: 3 (lower is better)
Translates to: VEGLETAATWFNKLCTEIVTSLT*LIAKLT
Trigger: AGTCAATTTTGCTATGAGCAATGTAAGGCTGGTAAC...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCGTAACTTTTTCCTCATaGGCTACACTAACTTGGTGT +
Preference number: 3 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSVTFSS*ATLTWC
Trigger: ACACCAAGTTAGTGTAGCCAATGAGGAAAAAGTTAC...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATGTTTGCAGGGGTATTaGGTTTTTAGACAGGTTCCA +
Preference number: 3 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSCLQGY*VFRQVP
Trigger: TGGAACCTGTCTAAAAACCAAATACCCCTGCAAACA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAATCCAAGTGTAGCCTTTaGACAAAACATTTCCCTATT +
Preference number: 3 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKSKCSL*TKHFPI
Trigger: AATAGGGAAATGTTTTGTCAAAAGGCTACACTTGGA...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAAATTTTGTTTCTGCTTaGTTCAGTTCCAAGTGTAGC +
Preference number: 3 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKNFVSA*FSSKCS
Trigger: GCTACACTTGGAACTGAACAAAGCAGAAACAAAATT...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAAAAAATCAGTTGGAATaGCAAACACCGTGTGTGACT +
Preference number: 3 (lower is better)
Translates to: VEGLETAATWFNKLCTEIKNQLE*QTPCVT
Trigger: AGTCACACACGGTGTTTGCAATTCCAACTGATTTTT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAATTAACATGAAACTATaGGTGTGGCTGACATGGATG +
Preference number: 3 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSINMKL*VWLTWM
Trigger: CATCCATGTCAGCCACACCAATAGTTTCATGTTAAT...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCAATTTTGTTTCTGCTTaGTTCAGTTCCAAGTGTAGC +
Preference number: 3 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSNFVSA*FSSKCS
Trigger: GCTACACTTGGAACTGAACAAAGCAGAAACAAAATT...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR TCA 72 bp TCAAAATGTCCTACAGGAACACCTAGAAGCACAGGTTaGCTATACAGTACTACAAATAAGATACCCAAAGCT +
Preference number: 3 (lower is better)
Translates to: SKCPTGTPRSTG*LYSTTNKIPKA
Trigger: AGCTTTGGGTATCTTATTTGTAGTACTGTATAGTCAACCTGTGCTTCTAGGTGTTCCTGTAGGACATTTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATTGTTTGCAGGGGTATTaGGTTTTTAGACAGGTTCCA +
Preference number: 3 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHCLQGY*VFRQVP
Trigger: TGGAACCTGTCTAAAAACCAAATACCCCTGCAAACA...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGACCATTATGTTGCTCTaGCAACAACATGCATCTTTA +
Preference number: 3 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQETIMLL*QQHASL
Trigger: TAAAGATGCATGTTGTTGCAAGAGCAACATAATGGT...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
3UTR-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATGTAACTTTTTCCTCATaGGCTACACTAACTTGGTGT +
Preference number: 3 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHVTFSS*ATLTWC
Trigger: ACACCAAGTTAGTGTAGCCAATGAGGAAAAAGTTAC...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
CDS-3UTR GCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACCTGACGGGGCCGGGTaGGGAGAGGTTGCGGCTCCG +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKPDGAG*GEVAAP
Trigger: CGGAGCCGCAACCTCTCCGCACCCGGCCCCGTCAGG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAGGCACCAGGCGACGGTaGGGCTCGGTCCCGGGACGA +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKGTRRR*GSVPGR
Trigger: TCGTCCCGGGACCGAGCCCCACCGTCGCCTGGTGCC...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAGGCTGGGGCTCTCGCTaGGCTCAGACGGGCTCCGGG +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEIGWGSR*AQTGSG
Trigger: CCCGGAGCCCGTCTGAGCTCAGCGAGAGCCCCAGCC...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAGGACGAGACCTACCCTaGGTGCATCCCAGGCCCGGG +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKGRDLP*VHPRPG
Trigger: CCCGGGCCTGGGATGCACCCAGGGTAGGTCTCGTCC...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATGCGCGACAGAGGCCCTaGCGGGGCCGGGTGCGGAGA +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHARQRP*RGRVRR
Trigger: TCTCCGCACCCGGCCCCGTCAGGGCCTCTGTCGCGC...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAGCTTCAGGCAACAGGTaGTCTTGCCCGGGAGGAGGG +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKASGNR*SCPGGG
Trigger: CCCTCCTCCCGGGCAAGATCACCTGTTGCCTGAAGC...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCACCTCCTCCTCCTCCTTaGCCGGCGACGGCCCTCTTC +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSPPPPP*PATALF
Trigger: GAAGAGGGCCGTCGCCGGCCAAGGAGGAGGAGGAGG...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCTCCCAGGCCCGGGGGTaGCCGGCAACAAAGTGTATC +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSSQARG*PATKCI
Trigger: GATACACTTTGTTGCCGGTCACCCCCGGGCCTGGGA...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCGTCCGCAGCCGCGGATaGCCGTCCTCGTCAATATGG +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSVRSRG*PSSSIW
Trigger: CCATATTGACGAGGACGGGCATCCGCGGCTGCGGAC...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATACAGGCCTGGTGGCTTTaGAGTAGCTCGCTCCTCGCT +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEIQAWWL*SSSLLA
Trigger: AGCGAGGAGCGAGCTACTTCAAAGCCACCAGGCCTG...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
3UTR CAA 72 bp GGCACAAGGGGGCTTGTAACTTCAAAGCAACCAAGGTaGGGCTCTTCCTCCAAGCAGAAAAATTCACAGCCT +
Preference number: 4 (lower is better)
Translates to: GTRGLVTSKQPR*GSSSKQKNSQP
Trigger: AGGCTGTGAATTTTTCTGCTTGGAGGAAGAGCCCAACCTTGGTTGCTTTGAAGTTACAAGCCCCCTTGTGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
CDS-3UTR TCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAGGCGGCCAGATCACCTaGGGTCAGGAGTTCAAGACC +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSGGQIT*GQEFKT
Trigger: GGTCTTGAACTCCTGACCTCAGGTGATCTGGCCGCC...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATAGTGTATCGAAAGGCTaGGGCGGCCGGGCTCGGGGC +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHSVSKG*GGRARG
Trigger: GCCCCGAGCCCGGCCGCCGCAGCCTTTCGATACACT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATGAGACCTACCCTGGGTaGATCCCAGGCCCGGGGGTG +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHETYPG*IPGPGV
Trigger: CACCCCCGGGCCTGGGATGCACCCAGGGTAGGTCTC...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATACTGATCCAACTGCCATaGGGCAGGCAACACTGGTTG +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEILIQLP*GRQHWL
Trigger: CAACCAGTGTTGCCTGCCTCATGGCAGTTGGATCAG...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATCTCAACCAAAAGGCTaGACACCGGCGCCGGAACTC +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSSQPKG*TPAPEL
Trigger: GAGTTCCGGCGCCGGTGTGCAGCCTTTTGGTTGAGA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTCAGGAGCCTGGCCCTaGTTGTCATTCCCTCCGACC +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQESGAWP*LSFPPT
Trigger: GGTCGGAGGGAATGACAACCAGGGCCAGGCTCCTGA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATGCGGTGCGTTTCTCCTaGGTCACCTCCTCCTGCTCC +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHAVRFS*VTSSCS
Trigger: GGAGCAGGAGGAGGTGACGCAGGAGAAACGCACCGC...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAAAATGTGGTGCACCTTaGCCCCGCTTCTCTTACACC +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEIKCGAP*PRFSYT
Trigger: GGTGTAAGAGAAGCGGGGGCAAGGTGCACCACATTT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATGTCCATCAGGAGCCTaGCCCTGGTTGTCATTCCCT +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSCPSGA*PWLSFP
Trigger: AGGGAATGACAACCAGGGCCAGGCTCCTGATGGACA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATATTGACCTTGCTCATCTaGGGGAGTTGCCGGGGAATT +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEILTLLI*GSCRGI
Trigger: AATTCCCCGGCAACTCCCCCAGATGAGCAAGGTCAA...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAAGCATCTTGGTCATCTaGCTCCTCCTCTGGACAGAG +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEISILVI*LLLWTE
Trigger: CTCTGTCCAGAGGAGGAGCCAGATGACCAAGATGCT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCGCTCACCCCAAAGCCTaGACTGTTTCCAAAATCCTC +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSAHPKA*TVSKIL
Trigger: GAGGATTTTGGAAACAGTTCAGGCTTTGGGGTGAGC...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCGGCTTCATGTTTCCCTaGCTGTGCTGCCCAGATATT +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSGFMFP*LCCPDI
Trigger: AATATCTGGGCAGCACAGGCAGGGAAACATGAAGCC...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACCAAGTCTGGCTCATTaGCTGCATTGGTCTTCTCAT +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKPSLAH*LHWSSH
Trigger: ATGAGAAGACCAATGCAGGCAATGAGCCAGACTTGG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCTGCTGGGCCTGTATATaGCTGTCCATGCACATGGTT +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSCWACI*LSMHMV
Trigger: AACCATGTGCATGGACAGCCATATACAGGCCCAGCA...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCGGATCACCACCTGATTaGCTTGTAGTCTTGGACCAA +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSGSPPD*LVVLDQ
Trigger: TTGGTCCAAGACTACAAGTCAATCAGGTGGTGATCC...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCGTATCTGGGATGCAGTaGCATTATCACTCCAGGCAA +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSVSGMQ*HYHSRQ
Trigger: TTGCCTGGAGTGATAATGTCACTGCATCCCAGATAC...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGATACTGAGATCCAGGTaGATGGGGGTACAATGGGGC +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEILRSR*MGVQWG
Trigger: GCCCCATTGTACCCCCATTCACCTGGATCTCAGTAT...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATACCCTGGGATCAACATTaGTCTCATTGTCCTGCTTCT +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEIPWDQH*SHCPAS
Trigger: AGAAGCAGGACAATGAGAGCAATGTTGATCCCAGGG...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTGGGGCATCTTCAGGTaGAGGCGACTCATGTTCATC +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEWGIFR*RRLMFI
Trigger: GATGAACATGAGTCGCCTCCACCTGAAGATGCCCCA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATCACAAGCCCCTCACCTaGCACAAGGGGGCTTGTAAC +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHHKPLT*HKGACN
Trigger: GTTACAAGCCCCCTTGTGCCAGGTGAGGGGCTTGTG...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCAGTAAAGTAGTCGCCTaGGTGTTTAGCTCTCTCTCT +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSSKVVA*VFSSLS
Trigger: AGAGAGAGAGCTAAACACTCAGGCGACTACTTTACT...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCATTAATTGTAGGTGGTaGACCACAGACCGGAATAGC +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSINCRW*TTDRNS
Trigger: GCTATTCCGGTCTGTGGTTCACCACCTACAATTAAT...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACTGCAGATAAGACAGTaGATAAACTCTCCACTCCAT +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKLQIRQ*INSPLH
Trigger: ATGGAGTGGAGAGTTTATTCACTGTCTTATCTGCAG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATCTCCTCTCAGATGGTaGGATGGTACACCTAACTCA +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSSPLRW*DGTPNS
Trigger: TGAGTTAGGTGTACCATCTCACCATCTGAGAGGAGA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAAAATGGAGACAAAAATaGCTCACAAGCCCCTCACCT +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEIKWRQK*LTSPSP
Trigger: AGGTGAGGGGCTTGTGAGTCATTTTTGTCTCCATTT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAACACTGGTTGCAGAGTaGAGTGGGTGTAACAAGAAA +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEITLVAE*SGCNKK
Trigger: TTTCTTGTTACACCCACTGCACTCTGCAACCAGTGT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATTCGTCTTCCAAGTCTaGCTCATTGCCTGCATTGGT +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSFVFQV*LIACIG
Trigger: ACCAATGCAGGCAATGAGCCAGACTTGGAAGACGAA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGCAAAGCAACCAAGGTTaGGCTCTTCCTCCAAGCAGA +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEQSNQG*ALPPSR
Trigger: TCTGCTTGGAGGAAGAGCCCAACCTTGGTTGCTTTG...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATCCCATCGAGGCCTGTTaGTCATGTCATCCAACTTGG +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHPIEAC*SCHPTW
Trigger: CCAAGTTGGATGACATGATCAACAGGCCTCGATGGG...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAGACAATTCACAGCTTTaGAGAATCGCTCAAAACACT +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKDNSQL*RIAQNT
Trigger: AGTGTTTTGAGCGATTCTTCAAAGCTGTGAATTGTC...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATCATGGATCACCACCTaGTTGACTTGTAGTCTTGGA +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSSWITT*LTCSLG
Trigger: TCCAAGACTACAAGTCAATCAGGTGGTGATCCATGA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCCGTACATTCTTGCTGTaGCGAAGGAGAATACACAAT +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSRTFLL*RRRIHN
Trigger: ATTGTGTATTCTCCTTCGTCACAGCAAGAATGTACG...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCACTGGGTGCACAGTCTTaGTGGAACCAGTTAATTATG +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSLGAQS*WNQLIM
Trigger: CATAATTAACTGGTTCCATCAAGACTGTGCACCCAG...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGAACTATTGGTGTGGCTaGCATGGATGGGCTCTGTTT +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQENYWCG*HGWALF
Trigger: AAACAGAGCCCATCCATGTCAGCCACACCAATAGTT...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTCTTGCAGAGACCATTaGATAACCGCACGACACAGA +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQESCRDH*ITARHR
Trigger: TCTGTGTCGTGCGGTTATGCAATGGTCTCTGCAAGA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGCTGCTGTATCCATTCTaGCATTCGTTCAGCTGTGAG +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQELLYPF*HSFSCE
Trigger: CTCACAGCTGAACGAATGGCAGAATGGATACAGCAG...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAATGTTTCCCTGCCTGTaGTGCCCAGATATTATCAAG +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSMFPCL*CPDIIK
Trigger: CTTGATAATATCTGGGCAGCACAGGCAGGGAAACAT...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATTTAGCTCTCTCTCTTaGTGTGCTCCCCAAAACAGT +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSFSSLS*CAPQNS
Trigger: ACTGTTTTGGGGAGCACAGCAAGAGAGAGAGCTAAA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATTGCTCTCATTGTCCTaGTTCTCATCCCCAGACATA +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSLLSLS*FSSPDI
Trigger: TATGTCTGGGGATGAGAAGCAGGACAATGAGAGCAA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAGTATTTTGTGCTTCCTaGTGTCTCACTTTCAGACTG +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEIVFCAS*CLTFRL
Trigger: CAGTCTGAAAGTGAGACAGCAGGAAGCACAAAATAC...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAAAGGAGAATACACAATaGATCATACCAATCACTGGC +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKKENTQ*IIPITG
Trigger: GCCAGTGATTGGTATGATGCATTGTGTATTCTCCTT...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAATATCGTTGTGCTATCTaGCGGCATAAGTTTCATAAG +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKYRCAI*RHKFHK
Trigger: CTTATGAAACTTATGCCGCCAGATAGCACAACGATA...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGCATCATACCAATCACTaGCAGAGCCACGGACTACTT +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEHHTNH*QSHGLL
Trigger: AAGTAGTCCGTGGCTCTGCCAGTGATTGGTATGATG...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
3UTR CAA 72 bp ATTTCTGCCTCTACAATGCTAAACATGAAAGTTCAGTaGGTGGAGGGCTTAGAAACAGCAGCAACATGGTTT +
Preference number: 4 (lower is better)
Translates to: ISASTMLNMKVQ*VEGLETAATWF
Trigger: AAACCATGTTGCTGCTGTTTCTAAGCCCTCCACCAACTGAACTTTCATGTTTAGCATTGTAGAGGCAGAAAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
CDS-3UTR TCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGCTGAGCAAGACGAACTaGCACATTTCTAAGCATGCA +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQELSKTN*HISKHA
Trigger: TGCATGCTTAGAAATGTGTCAGTTCGTCTTGCTCAG...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCACGAACAGTTTTGCTGTaGCAGTGCAATAGTAAGTCA +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSRTVLL*QCNSKS
Trigger: TGACTTACTATTGCACTGTCACAGCAAAACTGTTCG...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAAAAAACGAAGCAATTTaGCGGTTTCCTCTGAATTAC +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKKNEAI*RFPLNY
Trigger: GTAATTCAGAGGAAACCGTCAAATTGCTTCGTTTTT...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
41% GC, longest homopolymer 8 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTGCAAACACCGTGTGTaGCTTTCACTCAAAGTATCG +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQECKHRV*LSLKVS
Trigger: CGATACTTTGAGTGAAAGTCACACACGGTGTTTGCA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAATCTAATTTGTTTCAGTaGGGGAATAACCCATTTGTC +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKSNLFQ*GNNPFV
Trigger: GACAAATGGGTTATTCCCGCACTGAAACAAATTAGA...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATATCCCCTTCCAGCTTTaGGACACCTGCAACTGTGTA +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHIPFQL*DTCNCV
Trigger: TACACAGTTGCAGGTGTCGCAAAGCTGGAAGGGGAT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTTCTTGAAGAGACATTaGAACAGCGGATCAGCTGTG +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEFLKRH*NSGSAV
Trigger: CACAGCTGATCCGCTGTTGCAATGTCTCTTCAAGAA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCATAGGTATAGGAATATaGAACCTGCCAGAGAAGTTC +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSIGIGI*NLPEKF
Trigger: GAACTTCTCTGGCAGGTTGCATATTCCTATACCTAT...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATCATTGGACGTTTCATTaGTTTGCACTGGGGGAGACC +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHHWTFH*FALGET
Trigger: GGTCTCCCCCAGTGCAAAGCAATGAAACGTCCAATG...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATACTGTAAGGCCTGGGTaGACAGTCTTGATGGAACCA +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHTVRPG*TVLMEP
Trigger: TGGTTCCATCAAGACTGTGCACCCAGGCCTTACAGT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCCACTTCTCGGACAACTaGTGTCATTATGGTAACTTT +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSHFSDN*CHYGNF
Trigger: AAAGTTACCATAATGACAGCAGTTGTCCGAGAAGTG...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGCAGCCTCACAGTTTGTaGGTCATAATCTTCATGGTC +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEQPHSL*VIIFMV
Trigger: GACCATGAAGATTATGACCCACAAACTGTGAGGCTG...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAAATAGCCTGTTCAGCTaGAAGCTCTCCATTTCTCAT +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSNSLFS*KLSISH
Trigger: ATGAGAAATGGAGAGCTTCCAGCTGAACAGGCTATT...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAATCAACTCATCATCTTaGTCTATTGTGTCCATTCGT +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKINSSS*SIVSIR
Trigger: ACGAATGGACACAATAGACCAAGATGATGAGTTGAT...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAATGTCATTTAGAATTCTaGGGGCTGTTTCTTTCAAAG +
Preference number: 4 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKCHLEF*GLFLSK
Trigger: CTTTGAAAGAAACAGCCCCCAGAATTCTAAATGACA...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAACTGGGCACTTACAATaGAAAGGCAATTTTCTTATC +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEITGHLQ*KGNFLI
Trigger: GATAAGAAAATTGCCTTTTCATTGTAAGTGCCCAGT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAAAGAATAAACCATCTTaGAGAGACCATTGCATAACC +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEIKNKPS*RDHCIT
Trigger: GGTTATGCAATGGTCTCTGCAAGATGGTTTATTCTT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGGTCTGGCTCATTGCCTaGATTGGTCTTCTCATAAAT +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEVWLIA*IGLLIN
Trigger: ATTTATGAGAAGACCAATGCAGGCAATGAGCCAGAC...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGGTCTCACTTTCAGACTaGTCACTCTGTTGTATCAAC +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEVSLSD*SLCCIN
Trigger: GTTGATACAACAGAGTGAGCAGTCTGAAAGTGAGAC...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCTACTGCATTCGGTTATaGATGAATTGTACGTTCTGT +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSYCIRL*MNCTFC
Trigger: ACAGAACGTACAATTCATGCATAACCGAATGCAGTA...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATATACTCCATACTGTACTaGATTCGGTTATGCATGAAT +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEIYSILY*IRLCMN
Trigger: ATTCATGCATAACCGAATGCAGTACAGTATGGAGTA...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCGCTCAATTTTGTTTCTaGTTTGTTCAGTTCCAAGTG +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSAQFCF*FVQFQV
Trigger: CACTTGGAACTGAACAAAGCAGAAACAAAATTGAGC...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCATAGCATTGCCCAAATaGTTTAATAAGGGCTGCAAT +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSIALPK*FNKGCN
Trigger: ATTGCAGCCCTTATTAAACCATTTGGGCAATGCTAT...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATTTCCACTTCTGGATTaGGACCATCACTGTAATGAT +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSFPLLD*DHHCND
Trigger: ATCATTACAGTGATGGTCCCAATCCAGAAGTGGAAA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGGATCACCAAAAGGATTaGGAAGAGGAGGATTACCAT +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEDHQKD*EEEDYH
Trigger: ATGGTAATCCTCCTCTTCCCAATCCTTTTGGTGATC...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCTATGCTCCAGCATCTTaGCATAGCAAATTTTTGCAT +
Preference number: 4 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSYAPAS*HSKFLH
Trigger: ATGCAAAAATTTGCTATGCCAAGATGCTGGAGCATA...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAACTAGAGACCAAAACTaGGCACTTACAATGAAAAGG +
Preference number: 4 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSTRDQN*ALTMKR
Trigger: CCTTTTCATTGTAAGTGCCCAGTTTTGGTCTCTAGT...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAAAGAAGTGCATGACTTaGGTGGTGAAATTTCCTTTT +
Preference number: 4 (lower is better)
Translates to: VEGLETAATWFNKLCTEIKKCMT*VVKFPF
Trigger: AAAAGGAAATTTCACCACCCAAGTCATGCACTTCTT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATTCATCAGATATCTGCTaGGCAAGACGAACTGACACA +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHSSDIC*ARRTDT
Trigger: TGTGTCAGTTCGTCTTGCTCAGCAGATATCTGATGA...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATCCCATCTCGGTCATCTaGAATTCCTTTCAGTGCATT +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHPISVI*NSFQCI
Trigger: AATGCACTGAAAGGAATTCCAGATGACCGAGATGGG...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATATATCATCATTACTCTaGATCACGACCCTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHISSLL*ITTLQR
Trigger: CCTTTGGAGGGTCGTGATTCAGAGTAATGATGATAT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGATTGTATCATTTGTATaGGACCATACCTCCAAGTCA +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEIVSFV*DHTSKS
Trigger: TGACTTGGAGGTATGGTCTCATACAAATGATACAAT...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGACAGTGTCAACATCCTaGTTTCTCAAAATCTTCAGT +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQETVSTS*FLKIFS
Trigger: ACTGAAGATTTTGAGAAATCAGGATGTTGACACTGT...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATATCAGGCATATATCTTaGAGCCTCATCAGATATCTG +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHIRHIS*SLIRYL
Trigger: CAGATATCTGATGAGGCTTCAAGATATATGCCTGAT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATTTCCCACTCAGTAAGTaGTTCACAAGTAGTTATTGC +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHFPLSK*FTSSYC
Trigger: GCAATAACTACTTGTGAAGCACTTACTGAGTGGGAA...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR GCA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGAAATCACCATTATGTTaGTCTTGCAACAACATGCAT +
Preference number: 4 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEKSPLC*SCNNMH
Trigger: ATGCATGTTGTTGCAAGAGCAACATAATGGTGATTT...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATCTTTCAAAGGAAGACTaGCGATTCCGCAAACATTTA +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHLSKED*RFRKHL
Trigger: TAAATGTTTGCGGAATCGCCAGTCTTCCTTTGAAAG...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR TCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATGGTGATAGCAAGCTCTaGTATATATCTTATCAACTC +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHGDSKL*YISYQL
Trigger: GAGTTGATAAGATATATATCAGAGCTTGCTATCACC...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
3UTR CAA 72 bp CATCAACCAAATAATTTAAAGGTTACCAGCCTTACATaGCTCATAGCAAAATTGACTCCAGTGGCAAAGAAT +
Preference number: 4 (lower is better)
Translates to: HQPNNLKVTSLT*LIAKLTPVAKN
Trigger: ATTCTTTGCCACTGGAGTCAATTTTGCTATGAGCAATGTAAGGCTGGTAACCTTTAAATTATTTGGTTGATG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.8
ENST00000378308.7
CDS-3UTR GCA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATCTTTGCAATTTTGTCTaGTTATGTAGTTGTCTTGAG +
Preference number: 4 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHLCNFV*LCSCLE
Trigger: CTCAAGACAACTACATAAGCAGACAAAATTGCAAAG...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS TCA 90 bp GGTCCCGGGACGAGACCTACCCTGGGTGCATCCCAGGCCCGGGGGTaGCCGGCAACAAAGTGTATCGAAAGGCTGCGGCGGCCGGGCTCG +
Preference number: 5 (lower is better)
Translates to: GPGTRPTLGASQARG*PATKCIERLRRPGS
Trigger: CGAGCCCGGCCGCCGCAGCCTTTCGATACACTTTGTTGCCGGTCACCCCCGGGCCTGGGATGCACCCAGGGTAGGTCTCGTCCCGGGACC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.9
ENST00000378308.7
CDS CCA 90 bp GGCACCAGGCGACGGTGGGGCTCGGTCCCGGGACGAGACCTACCCTaGGTGCATCCCAGGCCCGGGGGTGACCGGCAACAAAGTGTATCG +
Preference number: 5 (lower is better)
Translates to: GTRRRWGSVPGRDLP*VHPRPGGDRQQSVS
Trigger: CGATACACTTTGTTGCCGGTCACCCCCGGGCCTGGGATGCACCCAGGGTAGGTCTCGTCCCGGGACCGAGCCCCACCGTCGCCTGGTGCC
70% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.9
ENST00000378308.7
CDS GCA 90 bp CCAGGCGACGGTGGGGCTCGGTCCCGGGACGAGACCTACCCTGGGTaGATCCCAGGCCCGGGGGTGACCGGCAACAAAGTGTATCGAAAG +
Preference number: 5 (lower is better)
Translates to: PGDGGARSRDETYPG*IPGPGVTGNKVYRK
Trigger: CTTTCGATACACTTTGTTGCCGGTCACCCCCGGGCCTGGGATGCACCCAGGGTAGGTCTCGTCCCGGGACCGAGCCCCACCGTCGCCTGG
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.9
ENST00000378308.7
CDS-3UTR CAA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCTATCCCCTTCCAGCTTaGCGACACCTGCAACTGTGT +
Preference number: 5 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSYPLPA*RHLQLC
Trigger: ACACAGTTGCAGGTGTCGCAAAGCTGGAAGGGGATA...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCAAAATGTGGTGCACCTaGCCCCCGCTTCTCTTACAC +
Preference number: 5 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSKMWCT*PPLLLH
Trigger: GTGTAAGAGAAGCGGGGGCAAGGTGCACCACATTTT...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAATCTTGCAGAGACCATaGCATAACCGCACGACACAG +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEIILQRP*HNRTTQ
Trigger: CTGTGTCGTGCGGTTATGCAATGGTCTCTGCAAGAT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGCCACTAGCCAACCCTTaGGTGATCGAGGATCTGGAG +
Preference number: 5 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEPLANP*VIEDLE
Trigger: CTCCAGATCCTCGATCACCAAAGGGTTGGCTAGTGG...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATATCCAAGTCTGGCTCATaGCCTGCATTGGTCTTCTCA +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEISKSGS*PALVFS
Trigger: TGAGAAGACCAATGCAGGCAATGAGCCAGACTTGGA...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATATCCCTGGGATCAACATaGCTCTCATTGTCCTGCTTC +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEISLGST*LSLSCF
Trigger: GAAGCAGGACAATGAGAGCAATGTTGATCCCAGGGA...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAGGGACTTCGCTGAGTTaGACTCAAATTTTGAGGCGC +
Preference number: 5 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSGTSLS*TQILRR
Trigger: GCGCCTCAAAATTTGAGTCAAACTCAGCGAAGTCCC...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCTCCCAGCCTCACAGTTaGTGGGTCATAATCTTCATG +
Preference number: 5 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSSQPHS*WVIIFM
Trigger: CATGAAGATTATGACCCACAAACTGTGAGGCTGGGA...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCTCAACATTGCTCTCATaGTCCTGCTTCTCATCCCCA +
Preference number: 5 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSSTLLS*SCFSSP
Trigger: TGGGGATGAGAAGCAGGACAATGAGAGCAATGTTGA...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAGGATCACCAAAAGGATaGGGAAGAGGAGGATTACCA +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEIGSPKG*GRGGLP
Trigger: TGGTAATCCTCCTCTTCCCAATCCTTTTGGTGATCC...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCATTGCCCTGCAGGATTaGGTAAGCAACAGGACAGTT +
Preference number: 5 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSIALQD*VSNRTV
Trigger: AACTGTCCTGTTGCTTACCAAATCCTGCAGGGCAAT...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAAGACACAGAAAAAGGTaGGACTGTAAGGCCTGGGTG +
Preference number: 5 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSRHRKR*DCKAWV
Trigger: CACCCAGGCCTTACAGTCCAACCTTTTTCTGTGTCT...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAACAAAGAGCTCAATTTTaGTATGGGCTACGTTGGCTT +
Preference number: 5 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKQRAQF*YGLRWL
Trigger: AAGCCAACGTAGCCCATACAAAAATTGAGCTCTTTG...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATACGACAATTCACAGCTTaGAAGAATCGCTCAAAACAC +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEIRQFTA*KNRSKH
Trigger: GTGTTTTGAGCGATTCTTCAAAGCTGTGAATTGTCG...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAGGGCTTGAAGGCATATaGGAACTTATCTGTGTAAGT +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEIGLEGI*ELICVS
Trigger: ACTTACACAGATAAGTTCCAATATGCCTTCAAGCCC...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATCATGGGTAACTTGGTaGATCTGTGTCATGGGATTC +
Preference number: 5 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSSWVTW*ICVMGF
Trigger: GAATCCCATGACACAGATCAACCAAGTTACCCATGA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAAGGACATGGCCCATCTaGCAAGGAAAAATGTGCAAT +
Preference number: 5 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSRTWPI*QGKMCN
Trigger: ATTGCACATTTTTCCTTGCAAGATGGGCCATGTCCT...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATCCATTGGACGTTTCATaGCTTTGCACTGGGGGAGAC +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHPLDVS*LCTGGD
Trigger: GTCTCCCCCAGTGCAAAGCAATGAAACGTCCAATGG...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATTCAAAGCAACCAAGGTaGGGCTCTTCCTCCAAGCAG +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHSKQPR*GSSSKQ
Trigger: CTGCTTGGAGGAAGAGCCCAACCTTGGTTGCTTTGA...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATACTTCATGTCAGTCTGTaGGCTTGTAAAAGGCTAAGA +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEILHVSL*ACKRLR
Trigger: TCTTAGCCTTTTACAAGCCAACAGACTGACATGAAG...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATACCCATCGAGGCCTGTaGATCATGTCATCCAACTTG +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHTHRGL*IMSSNL
Trigger: CAAGTTGGATGACATGATCAACAGGCCTCGATGGGT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTATCCATTGGATCTTTaGTGTATCACGGTCCTGGGA +
Preference number: 5 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEYPLDL*CITVLG
Trigger: TCCCAGGACCGTGATACACAAAAGATCCAATGGATA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAAAAGCGATCTATCCATaGGATCTTTTGTGTATCACG +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEIKAIYP*DLLCIT
Trigger: CGTGATACACAAAAGATCCAATGGATAGATCGCTTT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTTGATCATGGGTAACTaGGTTGATCTGTGTCATGGG +
Preference number: 5 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQELIMGN*VDLCHG
Trigger: CCCATGACACAGATCAACCAAGTTACCCATGATCAA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAATTATGTGCATTTCATaGATCCTTGGTTTGAGGTGG +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEIIMCIS*ILGLRW
Trigger: CCACCTCAAACCAAGGATCAATGAAATGCACATAAT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGCCTGGGTGCACAGTCTaGATGGAACCAGTTAATTAT +
Preference number: 5 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEPGCTV*MEPVNY
Trigger: ATAATTAACTGGTTCCATCAAGACTGTGCACCCAGG...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATAATTAACATGAAACTATaGGTGTGGCTGACATGGATG +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEIINMKL*VWLTWM
Trigger: CATCCATGTCAGCCACACCAATAGTTTCATGTTAAT...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp CATTTAGAATTCTGGGGGCTGTTTCTTTCAAAGGAAGACTGGCGATTCCGCAAAAAAATCACCATTATGTaGCTCTTGCAACAACATGCA +
Preference number: 5 (lower is better)
Translates to: HLEFWGLFLSKEDWRFRKKITIM*LLQQHA
Trigger: TGCATGTTGTTGCAAGAGCAACATAATGGTGATTTT...TTTGCGGAATCGCCAGTCTTCCTTTGAAAGAAACAGCCCCCAGAATTCTAAATG
41% GC, longest homopolymer 7 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGACACAGGGCAGATCTTaGCAATTTTGTCTGCTTATG +
Preference number: 5 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQETQGRS*QFCLLM
Trigger: CATAAGCAGACAAAATTGCAAAGATCTGCCCTGTGT...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GAATTGCAAACACCGTGTGTGACTTTCACTCAAAGTATCGGTGTCAAAATGTCCCATCATCTTGGTCTATaGTGTCCATTCGTTCATAAA +
Preference number: 5 (lower is better)
Translates to: ELQTPCVTFTQSIGVKMSHHLGL*CPFVHK
Trigger: TTTATGAACGAATGGACACAATAGACCAAGATGATG...GGACATTTTGACACCGATACTTTGAGTGAAAGTCACACACGGTGTTTGCAATTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp GTGGAGGGCTTAGAAACAGCAGCAACATGGTTTAACAAGTTGTGCACTGAAATACAAAAACGAAGCAATTaGACGGTTTCCTCTGAATTA +
Preference number: 5 (lower is better)
Translates to: VEGLETAATWFNKLCTEIQKRSN*TVSSEL
Trigger: TAATTCAGAGGAAACCGTCAAATTGCTTCGTTTTTG...TATTTCAGTGCACAACTTGTTAAACCATGTTGCTGCTGTTTCTAAGCCCTCCAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCATTGCTCATAGCAAAATaGACTCCAGTGGCAAAGAAT +
Preference number: 5 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSLLIAK*TPVAKN
Trigger: ATTCTTTGCCACTGGAGTCAATTTTGCTATGAGCAA...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAGTTACCAGCCTTACATaGCTCATAGCAAAATTGACT +
Preference number: 5 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSVTSLT*LIAKLT
Trigger: AGTCAATTTTGCTATGAGCAATGTAAGGCTGGTAAC...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTATAGGCTCTCCTTTTaGCTACTAGTTTTCCTTCTC +
Preference number: 5 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEYRLSF*LLVFLL
Trigger: GAGAAGGAAAACTAGTAGCAAAAAGGAGAGCCTATA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATATTCTTGAAGAGACATaGCAACAGCGGATCAGCTGT +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHILEET*QQRISC
Trigger: ACAGCTGATCCGCTGTTGCAATGTCTCTTCAAGAAT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGGTAACTTTTTCCTCATaGGCTACACTAACTTGGTGT +
Preference number: 5 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEVTFSS*ATLTWC
Trigger: ACACCAAGTTAGTGTAGCCAATGAGGAAAAAGTTAC...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGAAAAATCAGTTGGAATaGCAAACACCGTGTGTGACT +
Preference number: 5 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEKNQLE*QTPCVT
Trigger: AGTCACACACGGTGTTTGCAATTCCAACTGATTTTT...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp TTACAGTGTCAACATCCTGATTTCTCAAAATCTTCAGTAGAGGGCCAAAGGTCAACCATTATGTTGCTCTaGCAACAACATGCATCTTTA +
Preference number: 5 (lower is better)
Translates to: LQCQHPDFSKSSVEGQRSTIMLL*QQHASL
Trigger: TAAAGATGCATGTTGTTGCAAGAGCAACATAATGGT...TGACCTTTGGCCCTCTACTGAAGATTTTGAGAAATCAGGATGTTGACACTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AATTTGTATACACAACAGCTAAAAGACACAAGGCTGGGAAATTATCACCAGGAGTATCAGGCATATATCTaGAAGCCTCATCAGATATCT +
Preference number: 5 (lower is better)
Translates to: NLYTQQLKDTRLGNYHQEYQAYI*KPHQIS
Trigger: AGATATCTGATGAGGCTTCAAGATATATGCCTGATA...CTCCTGGTGATAATTTCCCAGCCTTGTGTCTTTTAGCTGTTGTGTATACAAATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATGAGCATCTAAGGCTGTaGGAATCAAGGCAAAACATA +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHEHLRL*ESRQNI
Trigger: TATGTTTTGCCTTGATTCCAACAGCCTTAGATGCTC...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATATAGGGCAAAAGCCCTaGTTCACATGGTTTTACAAC +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHIGQKP*FTWFYN
Trigger: GTTGTAAAACCATGTGAACAAGGGCTTTTGCCCTAT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATAACATGAAAGTTCAGTaGGTGGAGGGCTTAGAAACA +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHNMKVQ*VEGLET
Trigger: TGTTTCTAAGCCCTCCACCAACTGAACTTTCATGTT...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATCAATTAACACTGTCTTaGTCACCATCCAAAACACAC +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHQLTLS*SPSKTH
Trigger: GTGTGTTTTGGATGGTGACAAAGACAGTGTTAATTG...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATTATCAACTCATCATCTaGGTCTATTGTGTCCATTCG +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHYQLII*VYCVHS
Trigger: CGAATGGACACAATAGACCAAGATGATGAGTTGATA...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS-3UTR CAA 90 bp AAATCTTTCTGTGCACAAAAACTTGATGTGACTGAAATCCTGAATCAGTGTCATCAGATCTTTGCAATTTaGTCTGCTTATGTAGTTGTC +
Preference number: 5 (lower is better)
Translates to: KSFCAQKLDVTEILNQCHQIFAI*SAYVVV
Trigger: GACAACTACATAAGCAGACAAAATTGCAAAGATCTG...ATGACACTGATTCAGGATTTCAGTCACATCAAGTTTTTGTGCACAGAAAGATTT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000378308.7
CDS GCA 72 bp GGGGCTAGGCGCGACAGAGGCCCTGACGGGGCCGGGTaGGGAGAGGTTGCGGCTCCGGCGGCGGCGGAGACT +
Preference number: 6 (lower is better)
Translates to: GARRDRGPDGAG*GEVAAPAAAET
Trigger: AGTCTCCGCCGCCGCCGGAGCCGCAACCTCTCCGCACCCGGCCCCGTCAGGGCCTCTGTCGCGCCTAGCCCC
78% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000324545.9
ENST00000378308.7
CDS CCA 72 bp CGACGGTGGGGCTCGGTCCCGGGACGAGACCTACCCTaGGTGCATCCCAGGCCCGGGGGTGACCGGCAACAA +
Preference number: 6 (lower is better)
Translates to: RRWGSVPGRDLP*VHPRPGGDRQQ
Trigger: TTGTTGCCGGTCACCCCCGGGCCTGGGATGCACCCAGGGTAGGTCTCGTCCCGGGACCGAGCCCCACCGTCG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.9
ENST00000378308.7
CDS TCA 72 bp TCGCCGCCTCTGTCCCCGCTCCAGGCCTGGTGGCTTTaGAGTAGCTCGCTCCTCGCTCCCGGCGCCGACCCA +
Preference number: 6 (lower is better)
Translates to: SPPLSPLQAWWL*SSSLLAPGADP
Trigger: TGGGTCGGCGCCGGGAGCGAGGAGCGAGCTACTTCAAAGCCACCAGGCCTGGAGCGGGGACAGAGGCGGCGA
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000324545.9
ENST00000378308.7
CDS GCA 72 bp GGTGGGGCTCGGTCCCGGGACGAGACCTACCCTGGGTaGATCCCAGGCCCGGGGGTGACCGGCAACAAAGTG +
Preference number: 6 (lower is better)
Translates to: GGARSRDETYPG*IPGPGVTGNKV
Trigger: CACTTTGTTGCCGGTCACCCCCGGGCCTGGGATGCACCCAGGGTAGGTCTCGTCCCGGGACCGAGCCCCACC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000324545.9
ENST00000378308.7
CDS TCA 72 bp ACGAGACCTACCCTGGGTGCATCCCAGGCCCGGGGGTaGCCGGCAACAAAGTGTATCGAAAGGCTGCGGCGG +
Preference number: 6 (lower is better)
Translates to: TRPTLGASQARG*PATKCIERLRR
Trigger: CCGCCGCAGCCTTTCGATACACTTTGTTGCCGGTCACCCCCGGGCCTGGGATGCACCCAGGGTAGGTCTCGT
65% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000324545.9
ENST00000378308.7
CDS TCA 72 bp TCAGGCATATATCTTGAAGCCTCATCAGATATCTGCTaGGCAAGACGAACTGACACATTTCTAAGCATGCAC +
Preference number: 6 (lower is better)
Translates to: SGIYLEASSDIC*ARRTDTFLSMH
Trigger: GTGCATGCTTAGAAATGTGTCAGTTCGTCTTGCTCAGCAGATATCTGATGAGGCTTCAAGATATATGCCTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000324545.9
ENST00000378308.7
CDS TCA 72 bp TACGTTGAGACAAATGCCAAGCAGTTATTGAACAAATaGTTTGTATTCCTATTATGCTCATTTCCAAAGCAC +
Preference number: 6 (lower is better)
Translates to: YVETNAKQLLNK*FVFLLCSFPKH
Trigger: GTGCTTTGGAAATGAGCATAATAGGAATACAAATCATTTGTTCAATAACTGCTTGGCATTTGTCTCAACGTA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000487625.1