Pregenerated sensors for UQCRHL (Homo sapiens)

Ensembl gene IDs: ENSG00000233954

Ensembl transcript IDs: ENST00000483273.2

Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	AAAGTCATGTGTGTGGTGCCTCAAGTTTCCGTAGTGGTGTGGATCTaGAGTGGGGCTGCTTTTCCTGACCTATTGGCCAGGCTTACCTTT	+
Preference number: 5 (lower is better) Translates to: KVMCVVPQVSVVVWI*SGAAFPDLLARLTF Trigger: AAAGGTAAGCCTGGCCAATAGGTCAGGAAAAGCAGCCCCACTGCAGATCCACACCACTACGGAAACTTGAGGCACCACACACATGACTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS TCA 90 bp	CCTAGTCCACAGGTAAACATTCCATGCACTGGGGCAGAGGGGACTTaGGGAATTTATTTACTTCTTTATTGGATGGAGGAGGGTGGTGAG	+
Preference number: 5 (lower is better) Translates to: PSPQVNIPCTGAEGT*GIYLLLYWMEEGGE Trigger: CTCACCACCCTCCTCCATCCAATAAAGAAGTAAATAAATTCCTCAAGTCCCCTCTGCCCCAGTGCATGGAATGTTTACCTGTGGACTAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS CCA 90 bp	TTTATTTACTTCTTTATTGGATGGAGGAGGGTGGTGAGGGAAGAATaGGAAGTATTTGGTTCACCCCTGCCATTTATCCTGGGATTCCTG	+
Preference number: 5 (lower is better) Translates to: FIYFFIGWRRVVREE*EVFGSPLPFILGFL Trigger: CAGGAATCCCAGGATAAATGGCAGGGGTGAACCAAATACTTCCCATTCTTCCCTCACCACCCTCCTCCATCCAATAAAGAAGTAAATAAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS TCA 90 bp	AGTATTTGGTTCACCCCTGCCATTTATCCTGGGATTCCTGGCATCTaGGGAATCTGCATCCATACTGATTTGTTGACTCTGATTCTTTCT	+
Preference number: 5 (lower is better) Translates to: SIWFTPAIYPGIPGI*GICIHTDLLTLILS Trigger: AGAAAGAATCAGAGTCAACAAATCAGTATGGATGCAGATTCCTCAGATGCCAGGAATCCCAGGATAAATGGCAGGGGTGAACCAAATACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS GCA 72 bp	GAGGCCAACATCATCAGCAAGGATCCCCTGCAAACATaGCGCCCAGGAGGCAAGGCCTGTTTGGCATGTAGA	+
Preference number: 6 (lower is better) Translates to: EANIISKDPLQT*RPGGKACLACR Trigger: TCTACATGCCAAACAGGCCTTGCCTCCTGGGCGGCATGTTTGCAGGGGATCCTTGCTGATGATGTTGGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS GCA 72 bp	TGTGTGGTGCCTCAAGTTTCCGTAGTGGTGTGGATCTaGAGTGGGGCTGCTTTTCCTGACCTATTGGCCAGG	+
Preference number: 6 (lower is better) Translates to: CVVPQVSVVVWI*SGAAFPDLLAR Trigger: CCTGGCCAATAGGTCAGGAAAAGCAGCCCCACTGCAGATCCACACCACTACGGAAACTTGAGGCACCACACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS CCA 72 bp	GCAAAAGGAAGAAAGCTCTCTCAGGTGAGACAGCCATaGAGTGGGAGGGTGCAGGAGGAGGCCAACATCATC	+
Preference number: 6 (lower is better) Translates to: AKGRKLSQVRQP*SGRVQEEANII Trigger: GATGATGTTGGCCTCCTCCTGCACCCTCCCACTCCATGGCTGTCTCACCTGAGAGAGCTTTCTTCCTTTTGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS CAA 72 bp	GTCTCAGCCTCCCAAGTTTGCTCACTAGTTCATCCTTaGCCCCCAGTCAGCAAAGTCATGTGTGTGGTGCCT	+
Preference number: 6 (lower is better) Translates to: VSASQVCSLVHP*PPVSKVMCVVP Trigger: AGGCACCACACACATGACTTTGCTGACTGGGGGCAAAGGATGAACTAGTGAGCAAACTTGGGAGGCTGAGAC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS CAA 90 bp	GATCCTCCTGTCTCAGCCTCCCAAGTTTGCTCACTAGTTCATCCTTaGCCCCCAGTCAGCAAAGTCATGTGTGTGGTGCCTCAAGTTTCC	+
Preference number: 6 (lower is better) Translates to: DPPVSASQVCSLVHP*PPVSKVMCVVPQVS Trigger: GGAAACTTGAGGCACCACACACATGACTTTGCTGACTGGGGGCAAAGGATGAACTAGTGAGCAAACTTGGGAGGCTGAGACAGGAGGATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS TCA 72 bp	TTCACCCCTGCCATTTATCCTGGGATTCCTGGCATCTaGGGAATCTGCATCCATACTGATTTGTTGACTCTG	+
Preference number: 6 (lower is better) Translates to: FTPAIYPGIPGI*GICIHTDLLTL Trigger: CAGAGTCAACAAATCAGTATGGATGCAGATTCCTCAGATGCCAGGAATCCCAGGATAAATGGCAGGGGTGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000483273.2
CDS TCA 72 bp	TCAAGAAAAACTCTGAGGCTCATTCACCCAGATTTGTaGTTGTTAACTGGTGTTAAAATGATGTCACCTGGA	+
Preference number: 6 (lower is better) Translates to: SRKTLRLIHPDL*LLTGVKMMSPG Trigger: TCCAGGTGACATCATTTTAACACCAGTTAACAATCACAAATCTGGGTGAATGAGCCTCAGAGTTTTTCTTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000483273.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu