Pregenerated sensors for UPK2 (Homo sapiens)
Ensembl gene IDs: ENSG00000110375Ensembl transcript IDs: ENST00000264031.3, ENST00000534788.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AGAAGCTGCTGCTCCGGGCAGACCTCCTTACTTGCGGGAGCCCAGTaGCAGGGCAATGATGAAGCCCAGCACCAGCAGGAACATGGCGAC | + |
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Preference number: 5 (lower is better) Translates to: RSCCSGQTSLLAGAQ*QGNDEAQHQQEHGD Trigger: GTCGCCATGTTCCTGCTGGTGCTGGGCTTCATCATTGCCCTGGCACTGGGCTCCCGCAAGTAAGGAGGTCTGCCCGGAGCAGCAGCTTCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000264031.3 ENST00000534788.1 |
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| CDS CCA 90 bp | TCCTTCGAGGGAGTGTGGACATTGGGATCTCTCTGCTGGACTCAGTaGCTGTCCCCTTCTTCACTAGGTAGGAAATGCTGGTATGCACTG | + |
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Preference number: 5 (lower is better) Translates to: SFEGVWTLGSLCWTQ*LSPSSLGRKCWYAL Trigger: CAGTGCATACCAGCATTTCCTACCTAGTGAAGAAGGGGACAGCCACTGAGTCCAGCAGAGAGATCCCAATGTCCACACTCCCTCGAAGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534788.1 |
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| CDS GCA 90 bp | TGGATTCCATGTTCCTTCGAGGGAGTGTGGACATTGGGATCTCTCTaGTGGACTCAGTGGCTGTCCCCTTCTTCACTAGGTAGGAAATGC | + |
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Preference number: 5 (lower is better) Translates to: WIPCSFEGVWTLGSL*WTQWLSPSSLGRKC Trigger: GCATTTCCTACCTAGTGAAGAAGGGGACAGCCACTGAGTCCAGCAGAGAGATCCCAATGTCCACACTCCCTCGAAGGAACATGGAATCCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534788.1 |
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| CDS CCA 90 bp | ATTCCATGTTCCTTCGAGGGAGTGTGGACATTGGGATCTCTCTGCTaGACTCAGTGGCTGTCCCCTTCTTCACTAGGTAGGAAATGCTGG | + |
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Preference number: 5 (lower is better) Translates to: IPCSFEGVWTLGSLC*TQWLSPSSLGRKCW Trigger: CCAGCATTTCCTACCTAGTGAAGAAGGGGACAGCCACTGAGTCCAGCAGAGAGATCCCAATGTCCACACTCCCTCGAAGGAACATGGAAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534788.1 |
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| CDS GCA 90 bp | TGGATTCCATGTTCCTTCGAGGGAGTGTGGACATTGGGATCTCTCTaGTGGACTCAGTGGCTGTCCCCTTCTTCACTAGGTAGGAAATGT | + |
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Preference number: 5 (lower is better) Translates to: WIPCSFEGVWTLGSL*WTQWLSPSSLGRKC Trigger: ACATTTCCTACCTAGTGAAGAAGGGGACAGCCACTGAGTCCAGCAGAGAGATCCCAATGTCCACACTCCCTCGAAGGAACATGGAATCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000264031.3 |
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| CDS CCA 90 bp | TCCTTCGAGGGAGTGTGGACATTGGGATCTCTCTGCTGGACTCAGTaGCTGTCCCCTTCTTCACTAGGTAGGAAATGTAGAATTTGGTTC | + |
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Preference number: 5 (lower is better) Translates to: SFEGVWTLGSLCWTQ*LSPSSLGRKCRIWF Trigger: GAACCAAATTCTACATTTCCTACCTAGTGAAGAAGGGGACAGCCACTGAGTCCAGCAGAGAGATCCCAATGTCCACACTCCCTCGAAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000264031.3 |
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| CDS CCA 90 bp | ATTCCATGTTCCTTCGAGGGAGTGTGGACATTGGGATCTCTCTGCTaGACTCAGTGGCTGTCCCCTTCTTCACTAGGTAGGAAATGTAGA | + |
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Preference number: 5 (lower is better) Translates to: IPCSFEGVWTLGSLC*TQWLSPSSLGRKCR Trigger: TCTACATTTCCTACCTAGTGAAGAAGGGGACAGCCACTGAGTCCAGCAGAGAGATCCCAATGTCCACACTCCCTCGAAGGAACATGGAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000264031.3 |
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| CDS CCA 72 bp | GAGCCAGCAGAATCAGGATCAAGGGCAAGGTCCGGATaGGCAGCAGGGGTGCCATGCTGGGCTGGGAGGTGG | + |
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Preference number: 6 (lower is better) Translates to: EPAESGSRARSG*AAGVPCWAGRW Trigger: CCACCTCCCAGCCCAGCATGGCACCCCTGCTGCCCATCCGGACCTTGCCCTTGATCCTGATTCTGCTGGCTC 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000264031.3 |
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| CDS CAA 72 bp | CCTGGAGAAGCTGCTGCTCCGGGCAGACCTCCTTACTaGCGGGAGCCCAGTGCCAGGGCAATGATGAAGCCC | + |
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Preference number: 6 (lower is better) Translates to: PGEAAAPGRPPY*REPSARAMMKP Trigger: GGGCTTCATCATTGCCCTGGCACTGGGCTCCCGCAAGTAAGGAGGTCTGCCCGGAGCAGCAGCTTCTCCAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000264031.3 ENST00000534788.1 |
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| CDS CCA 72 bp | GTTCCCTGCGCCCACGGCACGGAGGCACCACAAAGCTaGACGTCACCACTTTGCTGTCATTGGCTCTCCGGA | + |
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Preference number: 6 (lower is better) Translates to: VPCAHGTEAPQS*TSPLCCHWLSG Trigger: TCCGGAGAGCCAATGACAGCAAAGTGGTGACGTCCAGCTTTGTGGTGCCTCCGTGCCGTGGGCGCAGGGAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000264031.3 ENST00000534788.1 |
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| CDS TCA 72 bp | CCATTGGGAAGTGGTGGCACCTCTATCCTTGAGACCTaGGGCTGGAAAATGCTGGTCATGGCGTCCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: PLGSGGTSILET*GWKMLVMASSS Trigger: GGAGCTGGACGCCATGACCAGCATTTTCCAGCCTCAGGTCTCAAGGATAGAGGTGCCACCACTTCCCAATGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000534788.1 |
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| CDS CCA 72 bp | TCCTTCGAGGGAGTGTGGACATTGGGATCTCTCTGCTaGACTCAGTGGCTGTCCCCTTCTTCACTAGGTAGG | + |
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Preference number: 6 (lower is better) Translates to: SFEGVWTLGSLC*TQWLSPSSLGR Trigger: CCTACCTAGTGAAGAAGGGGACAGCCACTGAGTCCAGCAGAGAGATCCCAATGTCCACACTCCCTCGAAGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000264031.3 ENST00000534788.1 |
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| CDS GCA 72 bp | GAATTTGGTTCCTGGCACGAGGTTTGTCACCTGGTATaGACTGAGCCGAGTGACTGTGAAGCCAGCACCACT | + |
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Preference number: 6 (lower is better) Translates to: EFGSWHEVCHLV*TEPSDCEASTT Trigger: AGTGGTGCTGGCTTCACAGTCACTCGGCTCAGTGCATACCAGGTGACAAACCTCGTGCCAGGAACCAAATTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000264031.3 |
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