Pregenerated sensors for UPF3B (Homo sapiens)
Ensembl gene IDs: ENSG00000125351Ensembl transcript IDs: ENST00000276201.7, ENST00000345865.6, ENST00000478840.1, ENST00000636792.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | ATTACCACCTTGCTCAGCGCTTCTTTCTTCTCCTTGTTGCGATCCTaGTTATCTTCCCCCTTGGAGCTGTCCCCCGAGGTCCCACCACCG | + |
|
Preference number: 5 (lower is better) Translates to: ITTLLSASFFSLLRS*LSSPLELSPEVPPP Trigger: CGGTGGTGGGACCTCGGGGGACAGCTCCAAGGGGGAAGATAAGCAGGATCGCAACAAGGAGAAGAAAGAAGCGCTGAGCAAGGTGGTAAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS GCA 90 bp | ATCTTCGAATTACCACCTTGCTCAGCGCTTCTTTCTTCTCCTTGTTaGGATCCTGCTTATCTTCCCCCTTGGAGCTGTCCCCCGAGGTCC | + |
|
Preference number: 5 (lower is better) Translates to: IFELPPCSALLSSPC*DPAYLPPWSCPPRS Trigger: GGACCTCGGGGGACAGCTCCAAGGGGGAAGATAAGCAGGATCGCAACAAGGAGAAGAAAGAAGCGCTGAGCAAGGTGGTAATTCGAAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS GCA 90 bp | GGCGCTCTTCTTCTTGCCGCTTCAGCCTCTCTCTTTCTCGAAGTATaGGCTCCTGATCTCGTTCATATTCCCGTTCCCTCTCCCTATAGT | + |
|
Preference number: 5 (lower is better) Translates to: GALLLAASASLFLEV*APDLVHIPVPSPYS Trigger: ACTATAGGGAGAGGGAACGGGAATATGAACGAGATCAGGAGCGCATACTTCGAGAAAGAGAGAGGCTGAAGCGGCAAGAAGAAGAGCGCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS GCA 90 bp | TCATCTTTAAGTTCGCTATCAGAACGCTTGGGCAATGTACAACTTTaGCCACTGGCTCTTTCATCACTGAGATTCTCTTTGTCCAATTTC | + |
|
Preference number: 5 (lower is better) Translates to: SSLSSLSERLGNVQL*PLALSSLRFSLSNF Trigger: GAAATTGGACAAAGAGAATCTCAGTGATGAAAGAGCCAGTGGGCAAAGTTGTACATTGCCCAAGCGTTCTGATAGCGAACTTAAAGATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000276201.7 ENST00000345865.6 ENST00000478840.1 |
||
| CDS GCA 90 bp | ATGGACAGTCCTGCTTTTCTTCTACTGGTGAGTATCTATAGTTGGTaGTGTCATCAGGAAAATAGTGTTGATAGTGGCTTTGAACTCCTG | + |
|
Preference number: 5 (lower is better) Translates to: MDSPAFLLLVSIYSW*CHQENSVDSGFELL Trigger: CAGGAGTTCAAAGCCACTATCAACACTATTTTCCTGATGACAGCACCAACTATAGATACTCACCAGTAGAAGAAAAGCAGGACTGTCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636792.1 |
||
| CDS CAA 72 bp | TTCTTCTCCTTGTTGCGATCCTGCTTATCTTCCCCCTaGGAGCTGTCCCCCGAGGTCCCACCACCGCTGCCT | + |
|
Preference number: 6 (lower is better) Translates to: FFSLLRSCLSSP*ELSPEVPPPLP Trigger: AGGCAGCGGTGGTGGGACCTCGGGGGACAGCTCCAAGGGGGAAGATAAGCAGGATCGCAACAAGGAGAAGAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS CAA 90 bp | CTTCTCTTTCTCATAGCGCTCCTTCTGCCTACGGCGCTCTTCTTCTaGCCGCTTCAGCCTCTCTCTTTCTCGAAGTATGCGCTCCTGATC | + |
|
Preference number: 6 (lower is better) Translates to: LLFLIALLLPTALFF*PLQPLSFSKYALLI Trigger: GATCAGGAGCGCATACTTCGAGAAAGAGAGAGGCTGAAGCGGCAAGAAGAAGAGCGCCGTAGGCAGAAGGAGCGCTATGAGAAAGAGAAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS GCA 72 bp | TTACCACCTTGCTCAGCGCTTCTTTCTTCTCCTTGTTaGGATCCTGCTTATCTTCCCCCTTGGAGCTGTCCC | + |
|
Preference number: 6 (lower is better) Translates to: LPPCSALLSSPC*DPAYLPPWSCP Trigger: GGGACAGCTCCAAGGGGGAAGATAAGCAGGATCGCAACAAGGAGAAGAAAGAAGCGCTGAGCAAGGTGGTAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS CAA 90 bp | AATCTTCGAATTACCACCTTGCTCAGCGCTTCTTTCTTCTCCTTGTaGCGATCCTGCTTATCTTCCCCCTTGGAGCTGTCCCCCGAGGTC | + |
|
Preference number: 6 (lower is better) Translates to: NLRITTLLSASFFSL*RSCLSSPLELSPEV Trigger: GACCTCGGGGGACAGCTCCAAGGGGGAAGATAAGCAGGATCGCAACAAGGAGAAGAAAGAAGCGCTGAGCAAGGTGGTAATTCGAAGATT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS CAA 90 bp | GGTAATCTTCGAATTACCACCTTGCTCAGCGCTTCTTTCTTCTCCTaGTTGCGATCCTGCTTATCTTCCCCCTTGGAGCTGTCCCCCGAG | + |
|
Preference number: 6 (lower is better) Translates to: GNLRITTLLSASFFS*LRSCLSSPLELSPE Trigger: CTCGGGGGACAGCTCCAAGGGGGAAGATAAGCAGGATCGCAACAAGGAGAAGAAAGAAGCGCTGAGCAAGGTGGTAATTCGAAGATTACC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS GCA 72 bp | CTTCTTGCCGCTTCAGCCTCTCTCTTTCTCGAAGTATaGGCTCCTGATCTCGTTCATATTCCCGTTCCCTCT | + |
|
Preference number: 6 (lower is better) Translates to: LLAASASLFLEV*APDLVHIPVPS Trigger: AGAGGGAACGGGAATATGAACGAGATCAGGAGCGCATACTTCGAGAAAGAGAGAGGCTGAAGCGGCAAGAAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS CAA 72 bp | CGAATTACCACCTTGCTCAGCGCTTCTTTCTTCTCCTaGTTGCGATCCTGCTTATCTTCCCCCTTGGAGCTG | + |
|
Preference number: 6 (lower is better) Translates to: RITTLLSASFFS*LRSCLSSPLEL Trigger: CAGCTCCAAGGGGGAAGATAAGCAGGATCGCAACAAGGAGAAGAAAGAAGCGCTGAGCAAGGTGGTAATTCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS GCA 72 bp | CTCGTTCATATTCCCGTTCCCTCTCCCTATAGTCTCTaGCGCTCTCATCTTCAGGTCTCTTTGGTTTTTCAT | + |
|
Preference number: 6 (lower is better) Translates to: LVHIPVPSPYSL*RSHLQVSLVFH Trigger: ATGAAAAACCAAAGAGACCTGAAGATGAGAGCGGCAGAGACTATAGGGAGAGGGAACGGGAATATGAACGAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS GCA 72 bp | AGTTCGCTATCAGAACGCTTGGGCAATGTACAACTTTaGCCACTGGCTCTTTCATCACTGAGATTCTCTTTG | + |
|
Preference number: 6 (lower is better) Translates to: SSLSERLGNVQL*PLALSSLRFSL Trigger: CAAAGAGAATCTCAGTGATGAAAGAGCCAGTGGGCAAAGTTGTACATTGCCCAAGCGTTCTGATAGCGAACT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000276201.7 ENST00000345865.6 ENST00000478840.1 |
||
| CDS CAA 72 bp | AAGTTCGCTATCAGAACGCTTGGGCAATGTACAACTTaGCCCACTGGCTCTTTCATCACTGAGATTCTCTTT | + |
|
Preference number: 6 (lower is better) Translates to: KFAIRTLGQCTT*PTGSFITEILF Trigger: AAAGAGAATCTCAGTGATGAAAGAGCCAGTGGGCAAAGTTGTACATTGCCCAAGCGTTCTGATAGCGAACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000276201.7 ENST00000345865.6 ENST00000478840.1 |
||
| CDS CAA 90 bp | TCAGGTCTCTTTGGTTTTTCATCTTTAAGTTCGCTATCAGAACGCTaGGGCAATGTACAACTTTGCCCACTGGCTCTTTCATCACTGAGA | + |
|
Preference number: 6 (lower is better) Translates to: SGLFGFSSLSSLSER*GNVQLCPLALSSLR Trigger: TCTCAGTGATGAAAGAGCCAGTGGGCAAAGTTGTACATTGCCCAAGCGTTCTGATAGCGAACTTAAAGATGAAAAACCAAAGAGACCTGA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000276201.7 ENST00000345865.6 |
||
| CDS CAA 90 bp | ACTGACCTCTTTGGTTTTTCATCTTTAAGTTCGCTATCAGAACGCTaGGGCAATGTACAACTTTGCCCACTGGCTCTTTCATCACTGAGA | + |
|
Preference number: 6 (lower is better) Translates to: TDLFGFSSLSSLSER*GNVQLCPLALSSLR Trigger: TCTCAGTGATGAAAGAGCCAGTGGGCAAAGTTGTACATTGCCCAAGCGTTCTGATAGCGAACTTAAAGATGAAAAACCAAAGAGGTCAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000478840.1 |
||
| CDS TCA 72 bp | GCAATGTACAACTTTGCCCACTGGCTCTTTCATCACTaGGATTCTCTTTGTCCAATTTCTTGGCTTTTTCTC | + |
|
Preference number: 6 (lower is better) Translates to: AMYNFAHWLFHH*DSLCPISWLFL Trigger: GAGAAAAAGCCAAGAAATTGGACAAAGAGAATCTCAGTGATGAAAGAGCCAGTGGGCAAAGTTGTACATTGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000276201.7 ENST00000345865.6 ENST00000478840.1 |
||
| CDS CAA 72 bp | TTTGGTTTTTCATCTTTAAGTTCGCTATCAGAACGCTaGGGCAATGTACAACTTTGCCCACTGGCTCTTTCA | + |
|
Preference number: 6 (lower is better) Translates to: FGFSSLSSLSER*GNVQLCPLALS Trigger: TGAAAGAGCCAGTGGGCAAAGTTGTACATTGCCCAAGCGTTCTGATAGCGAACTTAAAGATGAAAAACCAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000276201.7 ENST00000345865.6 ENST00000478840.1 |
||
| CDS CAA 90 bp | TTCATCTTTAAGTTCGCTATCAGAACGCTTGGGCAATGTACAACTTaGCCCACTGGCTCTTTCATCACTGAGATTCTCTTTGTCCAATTT | + |
|
Preference number: 6 (lower is better) Translates to: FIFKFAIRTLGQCTT*PTGSFITEILFVQF Trigger: AAATTGGACAAAGAGAATCTCAGTGATGAAAGAGCCAGTGGGCAAAGTTGTACATTGCCCAAGCGTTCTGATAGCGAACTTAAAGATGAA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000276201.7 ENST00000345865.6 ENST00000478840.1 |
||