RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBFD1 (Homo sapiens)

Ensembl gene IDs: ENSG00000103353

Ensembl transcript IDs: ENST00000395878.8, ENST00000564106.1, ENST00000565634.5, ENST00000566136.1, ENST00000566669.1, ENST00000567212.5, ENST00000567264.1, ENST00000569919.1

Found 304 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTaGGCCTCTAGGCCAAGCTCAGTGAGGGGTGCAGACAATCATCCA +
Preference number: 1 (lower is better)
Translates to: AGAVERHSPGTTMPG*ASRPSSVRGADNHP
Trigger: TGGATGATTGTCTGCACCCCTCACTGAGCTTGGCCTAGAGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR TCA 90 bp GCCCAGGCACAACCATGCCAGGCTGGGCCTCTAGGCCAAGCTCAGTaGGGGGTGCAGACAATCATCCAACCAGCAATGGAACTCCTTGGA +
Preference number: 1 (lower is better)
Translates to: AQAQPCQAGPLGQAQ*GVQTIIQPAMELLG
Trigger: TCCAAGGAGTTCCATTGCTGGTTGGATGATTGTCTGCACCCCTCACTGAGCTTGGCCTAGAGGCCCAGCCTGGCATGGTTGTGCCTGGGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 90 bp AACTATCTTCTACCTGGCTCCTCCTGGAAGAGGTCTTTGTCTGCTTaGGAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGC +
Preference number: 1 (lower is better)
Translates to: NYLLPGSSWKRSLSA*ELGLLSGTAQAQPC
Trigger: GCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGAGGAGCCAGGTAGAAGATAGTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR GCA 90 bp GCTGTTACAGTCACTCTCCGGAAACCAGCTCTTCCTTTATCCACCTaGACGGCCCCTGCCACAGTGAGGGAAAGATCTGGTCCCTCTGAC +
Preference number: 1 (lower is better)
Translates to: AVTVTLRKPALPLST*TAPATVRERSGPSD
Trigger: GTCAGAGGGACCAGATCTTTCCCTCACTGTGGCAGGGGCCGTGCAGGTGGATAAAGGAAGAGCTGGTTTCCGGAGAGTGACTGTAACAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 90 bp ACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCTTCTaGTGCTATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCA +
Preference number: 1 (lower is better)
Translates to: TVAQTRIENTSPSGF*CYVCSPESVQQGLP
Trigger: TGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATAGCACCAGAAGCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR GCA 90 bp TGGTGCTATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATaGAGACAGGGTGAGGAGCCACAGAGCTCAAGATTGTTGAAGCTG +
Preference number: 1 (lower is better)
Translates to: WCYVCSPESVQQGLP*RQGEEPQSSRLLKL
Trigger: CAGCTTCAACAATCTTGAGCTCTGTGGCTCCTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATAGCACCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR GCA 90 bp ACACGGATCGAAAACACTTCTCCCAGTGGCTTCTGGTGCTATGTCTaGTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGT +
Preference number: 1 (lower is better)
Translates to: TRIENTSPSGFWCYV*SPESVQQGLPCRQG
Trigger: ACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATAGCACCAGAAGCCACTGGGAGAAGTGTTTTCGATCCGTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR TCA 90 bp CTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTaGGGAGCCACAGAGCTCAAGATTGTTGAAGCTGATTTAGTGAGC +
Preference number: 1 (lower is better)
Translates to: LLSRERPARSSMQTG*GATELKIVEADLVS
Trigger: GCTCACTAAATCAGCTTCAACAATCTTGAGCTCTGTGGCTCCTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR GCA 90 bp GCCCAAAGGGCAAGACATTTAAACAGGAGTCACTGGGAGATACTCTaGTGCTCAACGAACACCACAGCAAGTGTGAGAGCTCCTTGCCCA +
Preference number: 1 (lower is better)
Translates to: AQRARHLNRSHWEIL*CSTNTTASVRAPCP
Trigger: TGGGCAAGGAGCTCTCACACTTGCTGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCAGTGACTCCTGTTTAAATGTCTTGCCCTTTGGGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 90 bp TTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACAGGAGTCACTaGGAGATACTCTGCTGCTCAACGAACACCACAGCAAGTGTGAGA +
Preference number: 1 (lower is better)
Translates to: LEMGAQRARHLNRSH*EILCCSTNTTASVR
Trigger: TCTCACACTTGCTGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCAGTGACTCCTGTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR GCA 90 bp CAAAGGGCAAGACATTTAAACAGGAGTCACTGGGAGATACTCTGCTaGTCAACGAACACCACAGCAAGTGTGAGAGCTCCTTGCCCAAGA +
Preference number: 1 (lower is better)
Translates to: QRARHLNRSHWEILC*STNTTASVRAPCPR
Trigger: TCTTGGGCAAGGAGCTCTCACACTTGCTGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCAGTGACTCCTGTTTAAATGTCTTGCCCTTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR TCA 90 bp CAAGAGACTTTCCCTCCTTTCAGAGGCAACCAAGCCAGAAGGAGATaGCAGAAGTTCACGTGTACAGAGAACAGAAGGGCTAAAACCAGA +
Preference number: 1 (lower is better)
Translates to: QETFPPFRGNQARRR*QKFTCTENRRAKTR
Trigger: TCTGGTTTTAGCCCTTCTGTTCTCTGTACACGTGAACTTCTGTCATCTCCTTCTGGCTTGGTTGCCTCTGAAAGGAGGGAAAGTCTCTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CAA 90 bp GGCTCCTCCTGGAAGAGGTCTTTGTCTGCTTGGGAGCTGGGGCTGTaGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTCTA +
Preference number: 2 (lower is better)
Translates to: GSSWKRSLSAWELGL*SGTAQAQPCQAGPL
Trigger: TAGAGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGAGGAGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGTGGGGAGCGGGGAGATaGTGGAACGCTGTCACCGGC +
Preference number: 2 (lower is better)
Translates to: YVCSPESVQQGLPCRQGEWGAGR*WNAVTG
Trigger: GCCGGTGACAGCGTTCCATCATCTCCCCGCTCCCCA...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTTGGGAGATACTCTGCTaGTCAACGAACACCACAGCA +
Preference number: 2 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPWEILC*STNTTA
Trigger: TGCTGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCA...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTAAGCTCAGTGAGGGGTaGAGACAATCATCCAACCAG +
Preference number: 2 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPKLSEG*RQSSNQ
Trigger: CTGGTTGGATGATTGTCTGCACCCCTCACTGAGCTT...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTGCAGCCAGGCTAGTCTaGGGATGGAGCCACCTGCTC +
Preference number: 2 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPAARLV*GWSHLL
Trigger: GAGCAGGTGGCTCCATCCCCAGACTAGCCTGGCTGC...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CAA 90 bp TGGCTGTATAACTATCTTCTACCTGGCTCCTCCTGGAAGAGGTCTTaGTCTGCTTGGGAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCA +
Preference number: 2 (lower is better)
Translates to: WLYNYLLPGSSWKRS*SAWELGLLSGTAQA
Trigger: TGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGAGGAGCCAGGTAGAAGATAGTTATACAGCCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGCTCCTTGCCCAAGACTaGGCAGCTCTTCCTCTCCCA +
Preference number: 2 (lower is better)
Translates to: GATCSERSKVGVRHCQDKLLAQD*AALPLP
Trigger: TGGGAGAGGAAGAGCTGCTCAGTCTTGGGCAAGGAG...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGACACCACAGCAAGTGTaGGAGCTCCTTGCCCAAGAC +
Preference number: 2 (lower is better)
Translates to: YVCSPESVQQGLPCRQGETPQQV*ELLAQD
Trigger: GTCTTGGGCAAGGAGCTCTCACACTTGCTGTGGTGT...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CAA 90 bp GATACTCTGCTGCTCAACGAACACCACAGCAAGTGTGAGAGCTCCTaGCCCAAGACTGAGCAGCTCTTCCTCTCCCACCGTGCGTTCACA +
Preference number: 2 (lower is better)
Translates to: DTLLLNEHHSKCESS*PKTEQLFLSHRAFT
Trigger: TGTGAACGCACGGTGGGAGAGGAAGAGCTGCTCAGTCTTGGGCAAGGAGCTCTCACACTTGCTGTGGTGTTCGTTGAGCAGCAGAGTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTACACCACAGCAAGTGTaGGAGCTCCTTGCCCAAGAC +
Preference number: 2 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPTPQQV*ELLAQD
Trigger: GTCTTGGGCAAGGAGCTCTCACACTTGCTGTGGTGT...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTGAAATGACACCAGCCTaGGTGAGAAGCAGTTGGCCC +
Preference number: 2 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPEMTPA*VRSSWP
Trigger: GGGCCAACTGCTTCTCACTCAGGCTGGTGTCATTTC...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGAAGCTCAGTGAGGGGTaGAGACAATCATCCAACCAG +
Preference number: 2 (lower is better)
Translates to: YVCSPESVQQGLPCRQGEKLSEG*RQSSNQ
Trigger: CTGGTTGGATGATTGTCTGCACCCCTCACTGAGCTT...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTCAGCAAGGTCTTCCATaGAGACAGGGTGAGGAGCCA +
Preference number: 2 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPQQGLP*RQGEEP
Trigger: TGGCTCCTCACCCTGTCTGCATGGAAGACCTTGCTG...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGTCATCCAACCAGCAATaGAACTCCTTGGAGATGGGG +
Preference number: 2 (lower is better)
Translates to: YVCSPESVQQGLPCRQGESSNQQ*NSLEMG
Trigger: CCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGCACTGGGAGATACTCTaGTGCTCAACGAACACCACA +
Preference number: 2 (lower is better)
Translates to: GATCSERSKVGVRHCQDKHWEIL*CSTNTT
Trigger: TGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCAGTG...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGCCAAAACCTGTCACCTaGAGACAGAGGCTTGGACAA +
Preference number: 2 (lower is better)
Translates to: GATCSERSKVGVRHCQDKPKPVT*RQRLGQ
Trigger: TTGTCCAAGCCTCTGTCTGCAGGTGACAGGTTTTGG...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCCACCTGCACGGCCCCTaGCACAGTGAGGGAAAGATC +
Preference number: 2 (lower is better)
Translates to: ATFLRHGNEAELISLALIHLHGP*HSEGKI
Trigger: GATCTTTCCCTCACTGTGGCAGGGGCCGTGCAGGTG...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCAGCAATGGAACTCCTTaGAGATGGGGGCCCAAAGGG +
Preference number: 2 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGSNGTP*RWGPKG
Trigger: CCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCT...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CAA 90 bp CTCAGTGAGGGGTGCAGACAATCATCCAACCAGCAATGGAACTCCTaGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACAGGAGTCAC +
Preference number: 2 (lower is better)
Translates to: LSEGCRQSSNQQWNS*EMGAQRARHLNRSH
Trigger: GTGACTCCTGTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGATTGTCTGCACCCCTCACTGAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCAGAAGGGAGGCCAAGTaGCCCGGCAAGCCACAAGAA +
Preference number: 2 (lower is better)
Translates to: ATFLRHGNEAELISLALIRREAK*PGKPQE
Trigger: TTCTTGTGGCTTGCCGGGCCACTTGGCCTCCCTTCT...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCCGCCAAACCTTACTATaGAAGCCTGCAACCAGTGAG +
Preference number: 2 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGRQTLL*KPATSE
Trigger: CTCACTGGTTGCAGGCTTTCATAGTAAGGTTTGGCG...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCTTCTGGTGCTATGTCTaGTCTCCCGAGAGCGTCCAG +
Preference number: 2 (lower is better)
Translates to: ATFLRHGNEAELISLALIFWCYV*SPESVQ
Trigger: CTGGACGCTCTCGGGAGAGCAGACATAGCACCAGAA...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACGGAACTCCTTGGAGATaGGGGCCCAAAGGGCAAGAC +
Preference number: 2 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDGTPWR*GPKGQD
Trigger: GTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCC...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp GTCTATGTGGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGTAGAATAAGCAATGGAACTCCTTaGAGATGGGGGCCCAAAGGG +
Preference number: 2 (lower is better)
Translates to: VYVGWIPELQLRREGRRISNGTP*RWGPKG
Trigger: CCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCT...TATTCTACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCCTTGAACTGAATGCATaGGCAGAAGGACCCAATGGA +
Preference number: 2 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGLELNA*AEGPNG
Trigger: TCCATTGGGTCCTTCTGCTCATGCATTCAGTTCAAG...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGAACACCCCAACTCATTaGAATGCAGTCCAAATGTTT +
Preference number: 2 (lower is better)
Translates to: YVCSPESVQQGLPCRQGENTPTH*NAVQMF
Trigger: AAACATTTGGACTGCATTGCAATGAGTTGGGGTGTT...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCAGTGTGAGAGCTCCTTaGCCAAGACTGAGCAGCTCT +
Preference number: 2 (lower is better)
Translates to: ATFLRHGNEAELISLALISVRAP*PRLSSS
Trigger: AGAGCTGCTCAGTCTTGGGCAAGGAGCTCTCACACT...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp AACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACTGGGAGATACTCTGCTaGTCAACGAACACCACAGCA +
Preference number: 2 (lower is better)
Translates to: NQQWNSLEMGAQRARHLNWEILC*STNTTA
Trigger: TGCTGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCA...GTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTATGGACAGAAATATGTaGCTTACTAACCCACCCCCA +
Preference number: 2 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPMDRNM*LTNPPP
Trigger: TGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCAT...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCAAAGCCTGCAACCAGTaGGAGGAGAACTGCAAAGAC +
Preference number: 2 (lower is better)
Translates to: ATFLRHGNEAELISLALIKACNQ*EENCKD
Trigger: GTCTTTGCAGTTCTCCTCTCACTGGTTGCAGGCTTT...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCCAAGGACAGAAAAGCTaGAATGACTGCTCCTTTCTC +
Preference number: 2 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGQGQKS*NDCSFL
Trigger: GAGAAAGGAGCAGTCATTGCAGCTTTTCTGTCCTTG...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTGCAGCCAGGCTAGTCTaGGGATGGAGCCACCTGCTC +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLAARLV*GWSHLL
Trigger: GAGCAGGTGGCTCCATCCCCAGACTAGCCTGGCTGC...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCCAAGCCAGAAGGAGATaGCAGAAGTTCACGTGTACA +
Preference number: 2 (lower is better)
Translates to: ATFLRHGNEAELISLALIQARRR*QKFTCT
Trigger: TGTACACGTGAACTTCTGTCATCTCCTTCTGGCTTG...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCAAGAGTAGATTTTCCTaGCTAGATGCATCACTTGGC +
Preference number: 2 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGKSRFS*LDASLG
Trigger: GCCAAGTGATGCATCTAGGCAGGAAAATCTACTCTT...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTGGAACTCCTTGGAGATaGGGGCCCAAAGGGCAAGAC +
Preference number: 2 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIGTPWR*GPKGQD
Trigger: GTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCC...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACCAAGCCAGAAGGAGATaGCAGAAGTTCACGTGTACA +
Preference number: 2 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDQARRR*QKFTCT
Trigger: TGTACACGTGAACTTCTGTCATCTCCTTCTGGCTTG...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTACAACCATGCCAGGCTaGGCCTCTAGGCCAAGCTCA +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLTTMPG*ASRPSS
Trigger: TGAGCTTGGCCTAGAGGCCCAGCCTGGCATGGTTGT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCAAGAGTCTGTCTATGTaGGCTGGATTCCTGAACTAC +
Preference number: 2 (lower is better)
Translates to: ATFLRHGNEAELISLALIKSLSM*AGFLNY
Trigger: GTAGTTCAGGAATCCAGCCCACATAGACAGACTCTT...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACCTGCAGACAGAGGCTTaGACAAGTAGCTCAGATGTA +
Preference number: 2 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDLQTEA*TSSSDV
Trigger: TACATCTGAGCTACTTGTCCAAGCCTCTGTCTGCAG...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACTCACAGAATGAGGGGTaGCAGCCTAGAATCCAAAAT +
Preference number: 2 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDSQNEG*QPRIQN
Trigger: ATTTTGGATTCTAGGCTGTCACCCCTCATTCTGTGA...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCCACTGGGAGATACTCTaGTGCTCAACGAACACCACA +
Preference number: 2 (lower is better)
Translates to: RREGRRISSLTGSQGIVIHWEIL*CSTNTT
Trigger: TGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCAGTG...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTTCTCCCAGTGGCTTCTaGTGCTATGTCTGCTCTCCC +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLSPSGF*CYVCSP
Trigger: GGGAGAGCAGACATAGCACCAGAAGCCACTGGGAGA...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GTCTATGTGGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGTAGAATAATGGAGAAGCATAATTaGAATCATCCTTGGACTGCT +
Preference number: 2 (lower is better)
Translates to: VYVGWIPELQLRREGRRIMEKHN*NHPWTA
Trigger: AGCAGTCCAAGGATGATTTCAATTATGCTTCTCCAT...TATTCTACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCATGGAGAAGCATAATTaGAATCATCCTTGGACTGCT +
Preference number: 2 (lower is better)
Translates to: ATFLRHGNEAELISLALIMEKHN*NHPWTA
Trigger: AGCAGTCCAAGGATGATTTCAATTATGCTTCTCCAT...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACAAGAGTAGATTTTCCTaGCTAGATGCATCACTTGGC +
Preference number: 2 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDKSRFS*LDASLG
Trigger: GCCAAGTGATGCATCTAGGCAGGAAAATCTACTCTT...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCAGCAGAAGGACCCAATaGAGAAGCATAATTGAAATC +
Preference number: 2 (lower is better)
Translates to: ATFLRHGNEAELISLALISRRTQ*RSIIEI
Trigger: GATTTCAATTATGCTTCTCCATTGGGTCCTTCTGCT...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTAAAGCCTGCAACCAGTaGGAGGAGAACTGCAAAGAC +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLKACNQ*EENCKD
Trigger: GTCTTTGCAGTTCTCCTCTCACTGGTTGCAGGCTTT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTCGCCAAACCTTACTATaGAAGCCTGCAACCAGTGAG +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLRQTLL*KPATSE
Trigger: CTCACTGGTTGCAGGCTTTCATAGTAAGGTTTGGCG...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCTCACAGAATGAGGGGTaGCAGCCTAGAATCCAAAAT +
Preference number: 2 (lower is better)
Translates to: RREGRRISSLTGSQGIVISQNEG*QPRIQN
Trigger: ATTTTGGATTCTAGGCTGTCACCCCTCATTCTGTGA...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTAAAAGGGGCAATGTCTaGCCCGAGATGATGTTCTAC +
Preference number: 2 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIKRGNV*PEMMFY
Trigger: GTAGAACATCATCTCGGGTCAGACATTGCCCCTTTT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACAAAACCAGAAGAAGGTaGGCTAATCATGAAAGCAAT +
Preference number: 2 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDKTRRR*ANHESN
Trigger: ATTGCTTTCATGATTAGCTCACCTTCTTCTGGTTTT...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTAAAAGGGGCAATGTCTaGCCCGAGATGATGTTCTAC +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLKRGNV*PEMMFY
Trigger: GTAGAACATCATCTCGGGTCAGACATTGCCCCTTTT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTCCCAACTCATTGCAATaGAGTCCAAATGTTTGCAAC +
Preference number: 2 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIPNSLQ*SPNVCN
Trigger: GTTGCAAACATTTGGACTGCATTGCAATGAGTTGGG...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTAAGAGTCTGTCTATGTaGGCTGGATTCCTGAACTAC +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLKSLSM*AGFLNY
Trigger: GTAGTTCAGGAATCCAGCCCACATAGACAGACTCTT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCCTAGAATCCAAAATGTaGTGTTTGGAACATTTCTCG +
Preference number: 2 (lower is better)
Translates to: RREGRRISSLTGSQGIVILESKM*CLEHFS
Trigger: CGAGAAATGTTCCAAACATCACATTTTGGATTCTAG...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTTCAAAGACTAAACAGTaGATACTACTGTGGCCCAGA +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLSKTKQ*ILLWPR
Trigger: TCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGA...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTCCCAACTCATTGCAATaGAGTCCAAATGTTTGCAAC +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLPNSLQ*SPNVCN
Trigger: GTTGCAAACATTTGGACTGCATTGCAATGAGTTGGG...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTAACACCCCAACTCATTaGAATGCAGTCCAAATGTTT +
Preference number: 2 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVINTPTH*NAVQMF
Trigger: AAACATTTGGACTGCATTGCAATGAGTTGGGGTGTT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR GCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTAGGCTGTTTCTTGGATaGTGCACTTCACAAATGTAC +
Preference number: 2 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLRLFLG*CTSQMY
Trigger: GTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAAGGATCTGCAGCTATATaGCTGTATAACTATCTTCTA +
Preference number: 2 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKGSAAI*LYNYLL
Trigger: TAGAAGATAGTTATACAGCCATATAGCTGCAGATCC...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTAGCAGAAGGACCCAATaGAGAAGCATAATTGAAATC +
Preference number: 2 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVISRRTQ*RSIIEI
Trigger: GATTTCAATTATGCTTCTCCATTGGGTCCTTCTGCT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTAAAACCAGAAGAAGGTaGGCTAATCATGAAAGCAAT +
Preference number: 2 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIKTRRR*ANHESN
Trigger: ATTGCTTTCATGATTAGCTCACCTTCTTCTGGTTTT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR TCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTCTAGAATCCAAAATGTaGTGTTTGGAACATTTCTCG +
Preference number: 2 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVILESKM*CLEHFS
Trigger: CGAGAAATGTTCCAAACATCACATTTTGGATTCTAG...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 72 bp GTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTaGGCCTCTAGGCCAAGCTCAGTGAGGGGTGCAGAC +
Preference number: 3 (lower is better)
Translates to: VERHSPGTTMPG*ASRPSSVRGAD
Trigger: GTCTGCACCCCTCACTGAGCTTGGCCTAGAGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAAC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR TCA 72 bp GGAAGAGGTCTTTGTCTGCTTGGGAGCTGGGGCTGTTaGGCGGCACAGCCCAGGCACAACCATGCCAGGCTG +
Preference number: 3 (lower is better)
Translates to: GRGLCLLGSWGC*AAQPRHNHARL
Trigger: CAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTCCCAAGCAGACAAAGACCTCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 72 bp CTACCTGGCTCCTCCTGGAAGAGGTCTTTGTCTGCTTaGGAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCA +
Preference number: 3 (lower is better)
Translates to: LPGSSWKRSLSA*ELGLLSGTAQA
Trigger: TGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGAGGAGCCAGGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 72 bp GATGGAACGCTGTCACCGGCAAGAAGGGAGGCCAAGTaGCCCGGCAAGCCACAAGAATGGGGCAATAAGGGG +
Preference number: 3 (lower is better)
Translates to: DGTLSPARREAK*PGKPQEWGNKG
Trigger: CCCCTTATTGCCCCATTCTTGTGGCTTGCCGGGCCACTTGGCCTCCCTTCTTGCCGGTGACAGCGTTCCATC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR GCA 72 bp TCTTCTACCTGGCTCCTCCTGGAAGAGGTCTTTGTCTaGTTGGGAGCTGGGGCTGTTGAGCGGCACAGCCCA +
Preference number: 3 (lower is better)
Translates to: SSTWLLLEEVFV*LGAGAVERHSP
Trigger: TGGGCTGTGCCGCTCAACAGCCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGAGGAGCCAGGTAGAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 72 bp GATGGGTGGAAAGCAAGCCTGCCCTTGCACGGCCCTTaGCACACTCAATCTACCCCCTTTCCCTTCTCTGCC +
Preference number: 3 (lower is better)
Translates to: DGWKASLPLHGP*HTQSTPFPFSA
Trigger: GGCAGAGAAGGGAAAGGGGGTAGATTGAGTGTGCCAAGGGCCGTGCAAGGGCAGGCTTGCTTTCCACCCATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR TCA 72 bp GCAGCCAGGCTAGTCTGGGGATGGAGCCACCTGCTCTaGGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGA +
Preference number: 3 (lower is better)
Translates to: AARLVWGWSHLL*EIKSRCAALSG
Trigger: TCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCCATCCCCAGACTAGCCTGGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR GCA 72 bp GTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATaGAGACAGGGTGAGGAGCCACAGAGCTCAAGATTG +
Preference number: 3 (lower is better)
Translates to: VCSPESVQQGLP*RQGEEPQSSRL
Trigger: CAATCTTGAGCTCTGTGGCTCCTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTAGAAGCAGTTGGCCCTaGGGGAGCGGGGAGATGATG +
Preference number: 3 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPRSSWP*GSGEMM
Trigger: CATCATCTCCCCGCTCCCCAAGGGCCAACTGCTTCT...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR GCA 72 bp GTCACTCTCCGGAAACCAGCTCTTCCTTTATCCACCTaGACGGCCCCTGCCACAGTGAGGGAAAGATCTGGT +
Preference number: 3 (lower is better)
Translates to: VTLRKPALPLST*TAPATVRERSG
Trigger: ACCAGATCTTTCCCTCACTGTGGCAGGGGCCGTGCAGGTGGATAAAGGAAGAGCTGGTTTCCGGAGAGTGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGAAGTGTGAGAGCTCCTaGCCCAAGACTGAGCAGCTC +
Preference number: 3 (lower is better)
Translates to: GATCSERSKVGVRHCQDKKCESS*PKTEQL
Trigger: GAGCTGCTCAGTCTTGGGCAAGGAGCTCTCACACTT...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 72 bp CAGACACGGATCGAAAACACTTCTCCCAGTGGCTTCTaGTGCTATGTCTGCTCTCCCGAGAGCGTCCAGCAA +
Preference number: 3 (lower is better)
Translates to: QTRIENTSPSGF*CYVCSPESVQQ
Trigger: TTGCTGGACGCTCTCGGGAGAGCAGACATAGCACCAGAAGCCACTGGGAGAAGTGTTTTCGATCCGTGTCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR TCA 72 bp CGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTaGGGAGCCACAGAGCTCAAGATTGTTGAAGCTGAT +
Preference number: 3 (lower is better)
Translates to: RERPARSSMQTG*GATELKIVEAD
Trigger: ATCAGCTTCAACAATCTTGAGCTCTGTGGCTCCTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR TCA 72 bp CTCTTCCTTTATCCACCTGCACGGCCCCTGCCACAGTaGGGGAAAGATCTGGTCCCTCTGACAGTAAGGAAA +
Preference number: 3 (lower is better)
Translates to: LFLYPPARPLPQ*GKDLVPLTVRK
Trigger: TTTCCTTACTGTCAGAGGGACCAGATCTTTCCCTCACTGTGGCAGGGGCCGTGCAGGTGGATAAAGGAAGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 72 bp GGGGCCCAAAGGGCAAGACATTTAAACAGGAGTCACTaGGAGATACTCTGCTGCTCAACGAACACCACAGCA +
Preference number: 3 (lower is better)
Translates to: GAQRARHLNRSH*EILCCSTNTTA
Trigger: TGCTGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCAGTGACTCCTGTTTAAATGTCTTGCCCTTTGGGCCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 72 bp CTACACCATGGAAAGCAAGAGTCTGTCTATGTGGGCTaGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGT +
Preference number: 3 (lower is better)
Translates to: LHHGKQESVYVG*IPELQLRREGR
Trigger: ACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGACAGACTCTTGCTTTCCATGGTGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR GCA 72 bp AGACATTTAAACAGGAGTCACTGGGAGATACTCTGCTaGTCAACGAACACCACAGCAAGTGTGAGAGCTCCT +
Preference number: 3 (lower is better)
Translates to: RHLNRSHWEILC*STNTTASVRAP
Trigger: AGGAGCTCTCACACTTGCTGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCAGTGACTCCTGTTTAAATGTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGATGCAGTCCAAATGTTaGCAACCAAAGATGTATGAA +
Preference number: 3 (lower is better)
Translates to: GATCSERSKVGVRHCQDKMQSKC*QPKMYE
Trigger: TTCATACATCTTTGGTTGCAAACATTTGGACTGCAT...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCCCAGGAAAGGAAGCGTaGATGAGGTACCAAAAGAAG +
Preference number: 3 (lower is better)
Translates to: ATFLRHGNEAELISLALIPGKEA*MRYQKK
Trigger: CTTCTTTTGGTACCTCATCAACGCTTCCTTTCCTGG...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp AACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACAAACACCCCAACTCATaGCAATGCAGTCCAAATGTT +
Preference number: 3 (lower is better)
Translates to: NQQWNSLEMGAQRARHLNKHPNS*QCSPNV
Trigger: AACATTTGGACTGCATTGCAATGAGTTGGGGTGTTT...GTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTAAGTGTGAGAGCTCCTaGCCCAAGACTGAGCAGCTC +
Preference number: 3 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIKCESS*PKTEQL
Trigger: GAGCTGCTCAGTCTTGGGCAAGGAGCTCTCACACTT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTTCCTGGAAGAGGTCTTaGTCTGCTTGGGAGCTGGGG +
Preference number: 3 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLSWKRS*SAWELG
Trigger: CCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGA...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 72 bp CCCTTCTGGGTGAAATATGGCAACTTTTCTGAGACATaGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCAT +
Preference number: 3 (lower is better)
Translates to: PFWVKYGNFSET*QRGRVNLFGPH
Trigger: ATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGCCATATTTCACCCAGAAGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACATGCATCACTTGGCATaGACTACACCATGGAAAGCA +
Preference number: 3 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDMHHLA*TTPWKA
Trigger: TGCTTTCCATGGTGTAGTCAATGCCAAGTGATGCAT...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CCA 72 bp ATTGACTACACCATGGAAAGCAAGAGTCTGTCTATGTaGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAG +
Preference number: 3 (lower is better)
Translates to: IDYTMESKSLSM*AGFLNYSLEGK
Trigger: CTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGACAGACTCTTGCTTTCCATGGTGTAGTCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR TCA 72 bp CACAGAATGAGGGGTGACAGCCTAGAATCCAAAATGTaGTGTTTGGAACATTTCTCGCCAAACCTTACTATG +
Preference number: 3 (lower is better)
Translates to: HRMRGDSLESKM*CLEHFSPNLTM
Trigger: CATAGTAAGGTTTGGCGAGAAATGTTCCAAACATCACATTTTGGATTCTAGGCTGTCACCCCTCATTCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTAAACACCCCAACTCATaGCAATGCAGTCCAAATGTT +
Preference number: 3 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIKHPNS*QCSPNV
Trigger: AACATTTGGACTGCATTGCAATGAGTTGGGGTGTTT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTCAAGGAATAGTCATCTaGGGCGAACACATGCTAATA +
Preference number: 3 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIQGIVI*GEHMLI
Trigger: TATTAGCATGTGTTCGCCCAAGATGACTATTCCTTG...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTCAAGGAATAGTCATCTaGGGCGAACACATGCTAATA +
Preference number: 3 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLQGIVI*GEHMLI
Trigger: TATTAGCATGTGTTCGCCCAAGATGACTATTCCTTG...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR TCA 72 bp GATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATaGAGAGACTGCTTACGGAACTCAAAGACTAAACAG +
Preference number: 3 (lower is better)
Translates to: DLVSTLQTVRNV*RDCLRNSKTKQ
Trigger: CTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR-3UTR CAA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTATGCAGTCCAAATGTTaGCAACCAAAGATGTATGAA +
Preference number: 3 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLMQSKC*QPKMYE
Trigger: TTCATACATCTTTGGTTGCAAACATTTGGACTGCAT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTCTGCAGGCTGCCTCGTaGGGCGCCGGAGTCCTCGGC +
Preference number: 4 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPLQAAS*GAGVLG
Trigger: GCCGAGGACTCCGGCGCCGCACGAGGCAGCCTGCAG...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTAAGCAAGCCTGCCCTTaGACGGCCCTTGGCACACTC +
Preference number: 4 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPKQACP*TALGTL
Trigger: GAGTGTGCCAAGGGCCGTGCAAGGGCAGGCTTGCTT...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTGGCTCCCTCAGCAGATaGGTGGAAAGCAAGCCTGCC +
Preference number: 4 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPGSLSR*VESKPA
Trigger: GGCAGGCTTGCTTTCCACCCATCTGCTGAGGGAGCC...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CAA 72 bp TCTACCTGGCTCCTCCTGGAAGAGGTCTTTGTCTGCTaGGGAGCTGGGGCTGTTGAGCGGCACAGCCCAGGC +
Preference number: 4 (lower is better)
Translates to: STWLLLEEVFVC*GAGAVERHSPG
Trigger: GCCTGGGCTGTGCCGCTCAACAGCCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGAGGAGCCAGGTAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCCTGCAGGCTGCCTCGTaGGGCGCCGGAGTCCTCGGC +
Preference number: 4 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGLQAAS*GAGVLG
Trigger: GCCGAGGACTCCGGCGCCGCACGAGGCAGCCTGCAG...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTCACTGGGAGATACTCTaGTGCTCAACGAACACCACA +
Preference number: 4 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPHWEIL*CSTNTT
Trigger: TGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCAGTG...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CAA 72 bp TGGAAGAGGTCTTTGTCTGCTTGGGAGCTGGGGCTGTaGAGCGGCACAGCCCAGGCACAACCATGCCAGGCT +
Preference number: 4 (lower is better)
Translates to: WKRSLSAWELGL*SGTAQAQPCQA
Trigger: AGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTCCCAAGCAGACAAAGACCTCTTCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTCAGATTTATTGTACATaGCGGACAGCGGTACCGTTG +
Preference number: 4 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPQIYCT*RTAVPL
Trigger: CAACGGTACCGCTGTCCGGCATGTACAATAAATCTG...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGAGGGTCACGCTCTTCTaGCAAGGCGCCTCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: GATCSERSKVGVRHCQDKRVTLF*QGASGR
Trigger: CCTCCCTGAGGCGCCTTGGCAGAAGAGCGTGACCCT...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGGTTGGCAGGCGCTCCTaGGCCCCCTTAACAGATGGC +
Preference number: 4 (lower is better)
Translates to: GATCSERSKVGVRHCQDKVGRRS*APLTDG
Trigger: GCCATCTGTTAAGGGGGCCCAGGAGCGCCTGCCAAC...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTAGGCTGTTTCTTGGATaGTGCACTTCACAAATGTAC +
Preference number: 4 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPRLFLG*CTSQMY
Trigger: GTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCT...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGCCCTCAGCAGATGGGTaGAAAGCAAGCCTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: YVCSPESVQQGLPCRQGEPSADG*KASLPL
Trigger: CAAGGGCAGGCTTGCTTTCCACCCATCTGCTGAGGG...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CAA 72 bp AGATGGGTGGAAAGCAAGCCTGCCCTTGCACGGCCCTaGGCACACTCAATCTACCCCCTTTCCCTTCTCTGC +
Preference number: 4 (lower is better)
Translates to: RWVESKPALARP*AHSIYPLSLLC
Trigger: GCAGAGAAGGGAAAGGGGGTAGATTGAGTGTGCCAAGGGCCGTGCAAGGGCAGGCTTGCTTTCCACCCATCT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCCGGCCCCTGCCACAGTaGGGGAAAGATCTGGTCCCT +
Preference number: 4 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGRPLPQ*GKDLVP
Trigger: AGGGACCAGATCTTTCCCTCACTGTGGCAGGGGCCG...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTCACCTGCACGGCCCCTaGCACAGTGAGGGAAAGATC +
Preference number: 4 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPHLHGP*HSEGKI
Trigger: GATCTTTCCCTCACTGTGGCAGGGGCCGTGCAGGTG...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCGGTGGAAAGCAAGCCTaGCCTTGCACGGCCCTTGGC +
Preference number: 4 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGGGKQA*PCTALG
Trigger: GCCAAGGGCCGTGCAAGGGCAGGCTTGCTTTCCACC...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTCCCTTGCACGGCCCTTaGCACACTCAATCTACCCCC +
Preference number: 4 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPPLHGP*HTQSTP
Trigger: GGGGGTAGATTGAGTGTGCCAAGGGCCGTGCAAGGG...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CAA 72 bp CTGCTCAACGAACACCACAGCAAGTGTGAGAGCTCCTaGCCCAAGACTGAGCAGCTCTTCCTCTCCCACCGT +
Preference number: 4 (lower is better)
Translates to: LLNEHHSKCESS*PKTEQLFLSHR
Trigger: ACGGTGGGAGAGGAAGAGCTGCTCAGTCTTGGGCAAGGAGCTCTCACACTTGCTGTGGTGTTCGTTGAGCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTCTCCTTGCCCAAGACTaGGCAGCTCTTCCTCTCCCA +
Preference number: 4 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPLLAQD*AALPLP
Trigger: TGGGAGAGGAAGAGCTGCTCAGTCTTGGGCAAGGAG...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGAGTGTGAGAGCTCCTTaGCCAAGACTGAGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: YVCSPESVQQGLPCRQGESVRAP*PRLSSS
Trigger: AGAGCTGCTCAGTCTTGGGCAAGGAGCTCTCACACT...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGTTCTGGTGCTATGTCTaGTCTCCCGAGAGCGTCCAG +
Preference number: 4 (lower is better)
Translates to: GATCSERSKVGVRHCQDKFWCYV*SPESVQ
Trigger: CTGGACGCTCTCGGGAGAGCAGACATAGCACCAGAA...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp AACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACGGTGGAAAGCAAGCCTaGCCTTGCACGGCCCTTGGC +
Preference number: 4 (lower is better)
Translates to: NQQWNSLEMGAQRARHLNGGKQA*PCTALG
Trigger: GCCAAGGGCCGTGCAAGGGCAGGCTTGCTTTCCACC...GTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp AACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACGTTGGCAGGCGCTCCTaGGCCCCCTTAACAGATGGC +
Preference number: 4 (lower is better)
Translates to: NQQWNSLEMGAQRARHLNVGRRS*APLTDG
Trigger: GCCATCTGTTAAGGGGGCCCAGGAGCGCCTGCCAAC...GTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp TCATCCAACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATGGAACTCCTTGGAGATaGGGGCCCAAAGGGCAAGAC +
Preference number: 4 (lower is better)
Translates to: SSNQQWNSLEMGAQRARHGTPWR*GPKGQD
Trigger: GTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCC...ATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCCCCTTGCACGGCCCTTaGCACACTCAATCTACCCCC +
Preference number: 4 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGPLHGP*HTQSTP
Trigger: GGGGGTAGATTGAGTGTGCCAAGGGCCGTGCAAGGG...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp TCATCCAACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATCCCTCAGCAGATGGGTaGAAAGCAAGCCTGCCCTTG +
Preference number: 4 (lower is better)
Translates to: SSNQQWNSLEMGAQRARHPSADG*KASLPL
Trigger: CAAGGGCAGGCTTGCTTTCCACCCATCTGCTGAGGG...ATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
3UTR CAA 72 bp AACTATCTTCTACCTGGCTCCTCCTGGAAGAGGTCTTaGTCTGCTTGGGAGCTGGGGCTGTTGAGCGGCACA +
Preference number: 4 (lower is better)
Translates to: NYLLPGSSWKRS*SAWELGLLSGT
Trigger: TGTGCCGCTCAACAGCCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGAGGAGCCAGGTAGAAGATAGTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAATTGCTGACCGAGGCCTaGGCTGCGGGGTCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKLLTEA*AAGSPG
Trigger: CCCTGGGGACCCCGCAGCCCAGGCCTCGGTCAGCAA...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCGCAGCCAGGCTAGTCTaGGGATGGAGCCACCTGCTC +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALIAARLV*GWSHLL
Trigger: GAGCAGGTGGCTCCATCCCCAGACTAGCCTGGCTGC...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGGAAAGGCAGCATCTCTaGACCTGGGATAAAGGACAC +
Preference number: 4 (lower is better)
Translates to: GATCSERSKVGVRHCQDKERQHL*TWDKGH
Trigger: GTGTCCTTTATCCCAGGTTCAGAGATGCTGCCTTTC...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGTCATCCAACCAGCAATaGAACTCCTTGGAGATGGGG +
Preference number: 4 (lower is better)
Translates to: GATCSERSKVGVRHCQDKSSNQQ*NSLEMG
Trigger: CCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGCTGCAGACAGAGGCTTaGACAAGTAGCTCAGATGTA +
Preference number: 4 (lower is better)
Translates to: YVCSPESVQQGLPCRQGELQTEA*TSSSDV
Trigger: TACATCTGAGCTACTTGTCCAAGCCTCTGTCTGCAG...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCTCCCTTCTCTGCCCCTaGCAAAGAAAGGCTGGGCAA +
Preference number: 4 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGSLLCP*QRKAGQ
Trigger: TTGCCCAGCCTTTCTTTGCCAGGGGCAGAGAAGGGA...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TCATCCAACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATGAAAGGCAGCATCTCTaGACCTGGGATAAAGGACAC +
Preference number: 4 (lower is better)
Translates to: SSNQQWNSLEMGAQRARHERQHL*TWDKGH
Trigger: GTGTCCTTTATCCCAGGTTCAGAGATGCTGCCTTTC...ATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TCATCCAACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATAAAGCCTGCAACCAGTaGGAGGAGAACTGCAAAGAC +
Preference number: 4 (lower is better)
Translates to: SSNQQWNSLEMGAQRARHKACNQ*EENCKD
Trigger: GTCTTTGCAGTTCTCCTCTCACTGGTTGCAGGCTTT...ATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGTGCATCACTTGGCATTaGCTACACCATGGAAAGCAA +
Preference number: 4 (lower is better)
Translates to: YVCSPESVQQGLPCRQGECITWH*LHHGKQ
Trigger: TTGCTTTCCATGGTGTAGTCAATGCCAAGTGATGCA...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp AACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACCAGCAAGGTCTTCCATaGAGACAGGGTGAGGAGCCA +
Preference number: 4 (lower is better)
Translates to: NQQWNSLEMGAQRARHLNQQGLP*RQGEEP
Trigger: TGGCTCCTCACCCTGTCTGCATGGAAGACCTTGCTG...GTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GTCTATGTGGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGTAGAATACTTCCTTTATCCACCTaGACGGCCCCTGCCACAGTG +
Preference number: 4 (lower is better)
Translates to: VYVGWIPELQLRREGRRILPLST*TAPATV
Trigger: CACTGTGGCAGGGGCCGTGCAGGTGGATAAAGGAAG...TATTCTACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGAGAGCTAACGCTACTTaGAAAAGGCCCACCATGGAT +
Preference number: 4 (lower is better)
Translates to: GATCSERSKVGVRHCQDKRANAT*KRPTMD
Trigger: ATCCATGGTGGGCCTTTTGCAAGTAGCGTTAGCTCT...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTTTGCTGACCGAGGCCTaGGCTGCGGGGTCCCCAGGG +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFLLTEA*AAGSPG
Trigger: CCCTGGGGACCCCGCAGCCCAGGCCTCGGTCAGCAA...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
52% GC, longest homopolymer 6 nt, total homopolymer stretches 23 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGATGGACAGAAATATGTaGCTTACTAACCCACCCCCA +
Preference number: 4 (lower is better)
Translates to: YVCSPESVQQGLPCRQGEMDRNM*LTNPPP
Trigger: TGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCAT...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp AACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACAGCAATGGAACTCCTTaGAGATGGGGGCCCAAAGGG +
Preference number: 4 (lower is better)
Translates to: NQQWNSLEMGAQRARHLNSNGTP*RWGPKG
Trigger: CCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCT...GTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp TCATCCAACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTCATCCAACCAGCAATaGAACTCCTTGGAGATGGGG +
Preference number: 4 (lower is better)
Translates to: SSNQQWNSLEMGAQRARHSSNQQ*NSLEMG
Trigger: CCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA...ATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GTCTATGTGGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGTAGAATAACAACCATGCCAGGCTaGGCCTCTAGGCCAAGCTCA +
Preference number: 4 (lower is better)
Translates to: VYVGWIPELQLRREGRRITTMPG*ASRPSS
Trigger: TGAGCTTGGCCTAGAGGCCCAGCCTGGCATGGTTGT...TATTCTACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGAC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACCTCCTTGCCCAAGACTaGGCAGCTCTTCCTCTCCCA +
Preference number: 4 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDLLAQD*AALPLP
Trigger: TGGGAGAGGAAGAGCTGCTCAGTCTTGGGCAAGGAG...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTTGGGGAGCGGGGAGATaGTGGAACGCTGTCACCGGC +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIWGAGR*WNAVTG
Trigger: GCCGGTGACAGCGTTCCATCATCTCCCCGCTCCCCA...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCGAAATGACACCAGCCTaGGTGAGAAGCAGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALIEMTPA*VRSSWP
Trigger: GGGCCAACTGCTTCTCACTCAGGCTGGTGTCATTTC...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCAAGCTCAGTGAGGGGTaGAGACAATCATCCAACCAG +
Preference number: 4 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGKLSEG*RQSSNQ
Trigger: CTGGTTGGATGATTGTCTGCACCCCTCACTGAGCTT...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCCAGCAAGGTCTTCCATaGAGACAGGGTGAGGAGCCA +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALIQQGLP*RQGEEP
Trigger: TGGCTCCTCACCCTGTCTGCATGGAAGACCTTGCTG...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GTCTATGTGGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGTAGAATATCTCCCAGTGGCTTCTaGTGCTATGTCTGCTCTCCC +
Preference number: 4 (lower is better)
Translates to: VYVGWIPELQLRREGRRISPSGF*CYVCSP
Trigger: GGGAGAGCAGACATAGCACCAGAAGCCACTGGGAGA...TATTCTACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCTCCCTTCTCTGCCCCTaGCAAAGAAAGGCTGGGCAA +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALISLLCP*QRKAGQ
Trigger: TTGCCCAGCCTTTCTTTGCCAGGGGCAGAGAAGGGA...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTTGGGGAGCGGGGAGATaGTGGAACGCTGTCACCGGC +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFWGAGR*WNAVTG
Trigger: GCCGGTGACAGCGTTCCATCATCTCCCCGCTCCCCA...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCAGGCTTTGGTCCTCCTaGAATGACACCAGCCTGAGT +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALIRLWSS*NDTSLS
Trigger: ACTCAGGCTGGTGTCATTTCAGGAGGACCAAAGCCT...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGCCCAACTCATTGCAATaGAGTCCAAATGTTTGCAAC +
Preference number: 4 (lower is better)
Translates to: GATCSERSKVGVRHCQDKPNSLQ*SPNVCN
Trigger: GTTGCAAACATTTGGACTGCATTGCAATGAGTTGGG...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTAGGGTCACGCTCTTCTaGCAAGGCGCCTCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIRVTLF*QGASGR
Trigger: CCTCCCTGAGGCGCCTTGGCAGAAGAGCGTGACCCT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCAAGCAAGCCTGCCCTTaGACGGCCCTTGGCACACTC +
Preference number: 4 (lower is better)
Translates to: RREGRRISSLTGSQGIVIKQACP*TALGTL
Trigger: GAGTGTGCCAAGGGCCGTGCAAGGGCAGGCTTGCTT...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGAGCAGAAGGACCCAATaGAGAAGCATAATTGAAATC +
Preference number: 4 (lower is better)
Translates to: YVCSPESVQQGLPCRQGESRRTQ*RSIIEI
Trigger: GATTTCAATTATGCTTCTCCATTGGGTCCTTCTGCT...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTAAGAGTCTGTCTATGTaGGCTGGATTCCTGAACTAC +
Preference number: 4 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPKSLSM*AGFLNY
Trigger: GTAGTTCAGGAATCCAGCCCACATAGACAGACTCTT...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGCTAGAATCCAAAATGTaGTGTTTGGAACATTTCTCG +
Preference number: 4 (lower is better)
Translates to: YVCSPESVQQGLPCRQGELESKM*CLEHFS
Trigger: CGAGAAATGTTCCAAACATCACATTTTGGATTCTAG...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTCGGCCCCTGCCACAGTaGGGGAAAGATCTGGTCCCT +
Preference number: 4 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLRPLPQ*GKDLVP
Trigger: AGGGACCAGATCTTTCCCTCACTGTGGCAGGGGCCG...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp AACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACTCTGTCTGTGTTCTGTaGTCTGAAGCAGAGCTAAGG +
Preference number: 4 (lower is better)
Translates to: NQQWNSLEMGAQRARHLNSVCVL*SEAELR
Trigger: CCTTAGCTCTGCTTCAGATCACAGAACACAGACAGA...GTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCTGGGAGATACTCTGCTaGTCAACGAACACCACAGCA +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALIWEILC*STNTTA
Trigger: TGCTGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCA...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACCTTTTCCCCAGGAACTaGAGGCCGACAAGGACAGAA +
Preference number: 4 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDLFPRN*RPTRTE
Trigger: TTCTGTCCTTGTCGGCCTGCAGTTCCTGGGGAAAAG...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAACTTCCTTTATCCACCTaGACGGCCCCTGCCACAGTG +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKLPLST*TAPATV
Trigger: CACTGTGGCAGGGGCCGTGCAGGTGGATAAAGGAAG...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAAAGAAGGGAGGCCAAGTaGCCCGGCAAGCCACAAGAA +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKRREAK*PGKPQE
Trigger: TTCTTGTGGCTTGCCGGGCCACTTGGCCTCCCTTCT...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
49% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCCTAGGCCAAGCTCAGTaGGGGGTGCAGACAATCATC +
Preference number: 4 (lower is better)
Translates to: RREGRRISSLTGSQGIVILGQAQ*GVQTII
Trigger: GATGATTGTCTGCACCCCTCACTGAGCTTGGCCTAG...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TCATCCAACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATATGGAGAAGCATAATTaGAATCATCCTTGGACTGCT +
Preference number: 4 (lower is better)
Translates to: SSNQQWNSLEMGAQRARHMEKHN*NHPWTA
Trigger: AGCAGTCCAAGGATGATTTCAATTATGCTTCTCCAT...ATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GTCTATGTGGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGTAGAATACAAGCCAGAAGGAGATaGCAGAAGTTCACGTGTACA +
Preference number: 4 (lower is better)
Translates to: VYVGWIPELQLRREGRRIQARRR*QKFTCT
Trigger: TGTACACGTGAACTTCTGTCATCTCCTTCTGGCTTG...TATTCTACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCGAAATGACACCAGCCTaGGTGAGAAGCAGTTGGCCC +
Preference number: 4 (lower is better)
Translates to: RREGRRISSLTGSQGIVIEMTPA*VRSSWP
Trigger: GGGCCAACTGCTTCTCACTCAGGCTGGTGTCATTTC...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TCATCCAACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATACTGTAAGAAATGTATaGAGAGACTGCTTACGGAAC +
Preference number: 4 (lower is better)
Translates to: SSNQQWNSLEMGAQRARHTVRNV*RDCLRN
Trigger: GTTCCGTAAGCAGTCTCTTCATACATTTCTTACAGT...ATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTTGGATGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCTCTGTCTGTGTTCTGTaGTCTGAAGCAGAGCTAAGG +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALISVCVL*SEAELR
Trigger: CCTTAGCTCTGCTTCAGATCACAGAACACAGACAGA...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCCAAGCCCCTTCTGGGTaGAATATGGCAACTTTTCTG +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALIQAPSG*NMATFL
Trigger: CAGAAAAGTTGCCATATTTCACCCAGAAGGGGCTTG...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTTCCCAAACAGGCATTTaGTTTGAAAACAGAAACCAG +
Preference number: 4 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPSQTGI*FENRNQ
Trigger: CTGGTTTCTGTTTTCAAATCAAATGCCTGTTTGGGA...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGGGATCTGCAGCTATATaGCTGTATAACTATCTTCTA +
Preference number: 4 (lower is better)
Translates to: GATCSERSKVGVRHCQDKGSAAI*LYNYLL
Trigger: TAGAAGATAGTTATACAGCCATATAGCTGCAGATCC...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTCCAAAATGTGATGTTTaGAACATTTCTCGCCAAACC +
Preference number: 4 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPPKCDV*NISRQT
Trigger: GGTTTGGCGAGAAATGTTCCAAACATCACATTTTGG...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAAGGCAAGCCACAAGAATaGGGCAATAAGGGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKGKPQE*GNKGSR
Trigger: CCTGCTCCCCTTATTGCCCCATTCTTGTGGCTTGCC...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCACTCAGGGCCTTACGTaGGCCCCTTCTATGTCCACA +
Preference number: 4 (lower is better)
Translates to: RREGRRISSLTGSQGIVITQGLT*APSMST
Trigger: TGTGGACATAGAAGGGGCCCACGTAAGGCCCTGAGT...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAAACTCAGGGCCTTACGTaGGCCCCTTCTATGTCCACA +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKTQGLT*APSMST
Trigger: TGTGGACATAGAAGGGGCCCACGTAAGGCCCTGAGT...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
48% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTGGCTCCCTCAGCAGATaGGTGGAAAGCAAGCCTGCC +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFGSLSR*VESKPA
Trigger: GGCAGGCTTGCTTTCCACCCATCTGCTGAGGGAGCC...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTACACCACAGCAAGTGTaGGAGCTCCTTGCCCAAGAC +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVITPQQV*ELLAQD
Trigger: GTCTTGGGCAAGGAGCTCTCACACTTGCTGTGGTGT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp AACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACTCAAAGACTAAACAGTaGATACTACTGTGGCCCAGA +
Preference number: 4 (lower is better)
Translates to: NQQWNSLEMGAQRARHLNSKTKQ*ILLWPR
Trigger: TCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGA...GTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACCAGATTTATTGTACATaGCGGACAGCGGTACCGTTG +
Preference number: 4 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDQIYCT*RTAVPL
Trigger: CAACGGTACCGCTGTCCGGCATGTACAATAAATCTG...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp AACCAGCAATGGAACTCCTTGGAGATGGGGGCCCAAAGGGCAAGACATTTAAACAGGCTGTTTCTTGGATaGTGCACTTCACAAATGTAC +
Preference number: 4 (lower is better)
Translates to: NQQWNSLEMGAQRARHLNRLFLG*CTSQMY
Trigger: GTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCT...GTTTAAATGTCTTGCCCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTGGTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCCAAGGACAGAAAAGCTaGAATGACTGCTCCTTTCTC +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALIQGQKS*NDCSFL
Trigger: GAGAAAGGAGCAGTCATTGCAGCTTTTCTGTCCTTG...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTTTCTGGTGCTATGTCTaGTCTCCCGAGAGCGTCCAG +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIFWCYV*SPESVQ
Trigger: CTGGACGCTCTCGGGAGAGCAGACATAGCACCAGAA...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTACAACCATGCCAGGCTaGGCCTCTAGGCCAAGCTCA +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFTTMPG*ASRPSS
Trigger: TGAGCTTGGCCTAGAGGCCCAGCCTGGCATGGTTGT...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTAGAAGGGAGGCCAAGTaGCCCGGCAAGCCACAAGAA +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFRREAK*PGKPQE
Trigger: TTCTTGTGGCTTGCCGGGCCACTTGGCCTCCCTTCT...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTTCTCCCAGTGGCTTCTaGTGCTATGTCTGCTCTCCC +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVISPSGF*CYVCSP
Trigger: GGGAGAGCAGACATAGCACCAGAAGCCACTGGGAGA...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACTGCATCACTTGGCATTaGCTACACCATGGAAAGCAA +
Preference number: 4 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDCITWH*LHHGKQ
Trigger: TTGCTTTCCATGGTGTAGTCAATGCCAAGTGATGCA...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCTGGGAGATACTCTGCTaGTCAACGAACACCACAGCA +
Preference number: 4 (lower is better)
Translates to: RREGRRISSLTGSQGIVIWEILC*STNTTA
Trigger: TGCTGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCA...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAACACTGGGAGATACTCTaGTGCTCAACGAACACCACA +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKHWEIL*CSTNTT
Trigger: TGTGGTGTTCGTTGAGCAGCAGAGTATCTCCCAGTG...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCAAGAGTAGATTTTCCTaGCTAGATGCATCACTTGGC +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALIKSRFS*LDASLG
Trigger: GCCAAGTGATGCATCTAGGCAGGAAAATCTACTCTT...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAACCAAAACCTGTCACCTaGAGACAGAGGCTTGGACAA +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKPKPVT*RQRLGQ
Trigger: TTGTCCAAGCCTCTGTCTGCAGGTGACAGGTTTTGG...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTGGCAAGCCACAAGAATaGGGCAATAAGGGGAGCAGG +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFGKPQE*GNKGSR
Trigger: CCTGCTCCCCTTATTGCCCCATTCTTGTGGCTTGCC...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCCTTGAACTGAATGCATaGGCAGAAGGACCCAATGGA +
Preference number: 4 (lower is better)
Translates to: RREGRRISSLTGSQGIVILELNA*AEGPNG
Trigger: TCCATTGGGTCCTTCTGCTCATGCATTCAGTTCAAG...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTAAAGCCTGCAACCAGTaGGAGGAGAACTGCAAAGAC +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIKACNQ*EENCKD
Trigger: GTCTTTGCAGTTCTCCTCTCACTGGTTGCAGGCTTT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTCGCCAAACCTTACTATaGAAGCCTGCAACCAGTGAG +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIRQTLL*KPATSE
Trigger: CTCACTGGTTGCAGGCTTTCATAGTAAGGTTTGGCG...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTAGGCTTTGGTCCTCCTaGAATGACACCAGCCTGAGT +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFRLWSS*NDTSLS
Trigger: ACTCAGGCTGGTGTCATTTCAGGAGGACCAAAGCCT...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTAGTGTGAGAGCTCCTTaGCCAAGACTGAGCAGCTCT +
Preference number: 4 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLSVRAP*PRLSSS
Trigger: AGAGCTGCTCAGTCTTGGGCAAGGAGCTCTCACACT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTCTTTTCCCCAGGAACTaGAGGCCGACAAGGACAGAA +
Preference number: 4 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLLFPRN*RPTRTE
Trigger: TTCTGTCCTTGTCGGCCTGCAGTTCCTGGGGAAAAG...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAACTGCAGACAGAGGCTTaGACAAGTAGCTCAGATGTA +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKLQTEA*TSSSDV
Trigger: TACATCTGAGCTACTTGTCCAAGCCTCTGTCTGCAG...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCAACTTTTCTGAGACATaGCAACGAGGCAGAGTTAAT +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALINFSET*QRGRVN
Trigger: ATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTT...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTCTTGAACTGAATGCATaGGCAGAAGGACCCAATGGA +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVILELNA*AEGPNG
Trigger: TCCATTGGGTCCTTCTGCTCATGCATTCAGTTCAAG...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCCTAGAATCCAAAATGTaGTGTTTGGAACATTTCTCG +
Preference number: 4 (lower is better)
Translates to: ATFLRHGNEAELISLALILESKM*CLEHFS
Trigger: CGAGAAATGTTCCAAACATCACATTTTGGATTCTAG...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACAACACCCCAACTCATTaGAATGCAGTCCAAATGTTT +
Preference number: 4 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDNTPTH*NAVQMF
Trigger: AAACATTTGGACTGCATTGCAATGAGTTGGGGTGTT...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTAAGCTCAGTGAGGGGTaGAGACAATCATCCAACCAG +
Preference number: 4 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLKLSEG*RQSSNQ
Trigger: CTGGTTGGATGATTGTCTGCACCCCTCACTGAGCTT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTAGAGCTAACGCTACTTaGAAAAGGCCCACCATGGAT +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIRANAT*KRPTMD
Trigger: ATCCATGGTGGGCCTTTTGCAAGTAGCGTTAGCTCT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACCCAAAATGTGATGTTTaGAACATTTCTCGCCAAACC +
Preference number: 4 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDPKCDV*NISRQT
Trigger: GGTTTGGCGAGAAATGTTCCAAACATCACATTTTGG...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACAACTTTTCTGAGACATaGCAACGAGGCAGAGTTAAT +
Preference number: 4 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDNFSET*QRGRVN
Trigger: ATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTT...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTATATGGCAACTTTTCTaGGACATGGCAACGAGGCAG +
Preference number: 4 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLIWQLF*DMATRQ
Trigger: CTGCCTCGTTGCCATGTCTCAGAAAAGTTGCCATAT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTCAAGCCCCTTCTGGGTaGAATATGGCAACTTTTCTG +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFQAPSG*NMATFL
Trigger: CAGAAAAGTTGCCATATTTCACCCAGAAGGGGCTTG...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 21 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCGTGCCAATCCACAGCTaGTCTTGTTCTAGTTTAAAG +
Preference number: 4 (lower is better)
Translates to: RREGRRISSLTGSQGIVIVPIHS*SCSSLK
Trigger: CTTTAAACTAGAACAAGACCAGCTGTGGATTGGCAC...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAAATGGAGAAGCATAATTaGAATCATCCTTGGACTGCT +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKMEKHN*NHPWTA
Trigger: AGCAGTCCAAGGATGATTTCAATTATGCTTCTCCAT...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
41% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTCAAGGACAGAAAAGCTaGAATGACTGCTCCTTTCTC +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFQGQKS*NDCSFL
Trigger: GAGAAAGGAGCAGTCATTGCAGCTTTTCTGTCCTTG...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTTGCCAGGTTCCTCCATaGCATGATGATTGTGTACAA +
Preference number: 4 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLCQVPP*HDDCVQ
Trigger: TTGTACACAATCATCATGGCATGGAGGAACCTGGCA...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000567212.5
CDS-3UTR CCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTATGGACAGAAATATGTaGCTTACTAACCCACCCCCA +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFMDRNM*LTNPPP
Trigger: TGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCAT...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCAGCAGAAGGACCCAATaGAGAAGCATAATTGAAATC +
Preference number: 4 (lower is better)
Translates to: RREGRRISSLTGSQGIVISRRTQ*RSIIEI
Trigger: GATTTCAATTATGCTTCTCCATTGGGTCCTTCTGCT...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAAAAAACCAGAAGAAGGTaGGCTAATCATGAAAGCAAT +
Preference number: 4 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKKTRRR*ANHESN
Trigger: ATTGCTTTCATGATTAGCTCACCTTCTTCTGGTTTT...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
40% GC, longest homopolymer 9 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTTCAAAGACTAAACAGTaGATACTACTGTGGCCCAGA +
Preference number: 4 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFSKTKQ*ILLWPR
Trigger: TCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGA...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTACTGTAAGAAATGTATaGAGAGACTGCTTACGGAAC +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVITVRNV*RDCLRN
Trigger: GTTCCGTAAGCAGTCTCTTCATACATTTCTTACAGT...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTAAGAGTAGATTTTCCTaGCTAGATGCATCACTTGGC +
Preference number: 4 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLKSRFS*LDASLG
Trigger: GCCAAGTGATGCATCTAGGCAGGAAAATCTACTCTT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR TCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTTCCCAAACAGGCATTTaGTTTGAAAACAGAAACCAG +
Preference number: 4 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLSQTGI*FENRNQ
Trigger: CTGGTTTCTGTTTTCAAATCAAATGCCTGTTTGGGA...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR GCA 90 bp CACAGATTTAGTCAGTACACTCCAGACTGTAAGAAATGTATGAAGAGACTGCTTAACACCCCAACTCATTaGAATGCAGTCCAAATGTTT +
Preference number: 4 (lower is better)
Translates to: HRFSQYTPDCKKCMKRLLNTPTH*NAVQMF
Trigger: AAACATTTGGACTGCATTGCAATGAGTTGGGGTGTT...AAGCAGTCTCTTCATACATTTCTTACAGTCTGGAGTGTACTGACTAAATCTGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CCA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTGGATCTGCAGCTATATaGCTGTATAACTATCTTCTA +
Preference number: 4 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVIGSAAI*LYNYLL
Trigger: TAGAAGATAGTTATACAGCCATATAGCTGCAGATCC...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS CCA 90 bp GCCTGCAAGGGGGTTAGGGGGTGGGCGCTCGCCGCGGGCTGGGCTTaGGAACGGACGCTGTCCGGGCGCCGCCGGACCTCCGTTCCCGAG +
Preference number: 5 (lower is better)
Translates to: ACKGVRGWALAAGWA*ERTLSGRRRTSVPE
Trigger: CTCGGGAACGGAGGTCCGGCGGCGCCCGGACAGCGTCCGTTCCCAAGCCCAGCCCGCGGCGAGCGCCCACCCCCTAACCCCCTTGCAGGC
77% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000566669.1
CDS CCA 90 bp CTCCATGCCTGCAAGGGGGTTAGGGGGTGGGCGCTCGCCGCGGGCTaGGCTTGGGAACGGACGCTGTCCGGGCGCCGCCGGACCTCCGTT +
Preference number: 5 (lower is better)
Translates to: LHACKGVRGWALAAG*AWERTLSGRRRTSV
Trigger: AACGGAGGTCCGGCGGCGCCCGGACAGCGTCCGTTCCCAAGCCCAGCCCGCGGCGAGCGCCCACCCCCTAACCCCCTTGCAGGCATGGAG
74% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000566669.1
CDS-3UTR CAA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTAGAAGCAGTTGGCCCTaGGGGAGCGGGGAGATGATG +
Preference number: 5 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPRSSWP*GSGEMM
Trigger: CATCATCTCCCCGCTCCCCAAGGGCCAACTGCTTCT...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS GCA 90 bp CAAGTGAAGCGGGACTGGGTGAGGTCAGGGGAGGCGAGGTGCACCTaGACAAGGGGACATGGCCATCCTGGAGCAGCAGACACCTCAGGG +
Preference number: 5 (lower is better)
Translates to: QVKRDWVRSGEARCT*TRGHGHPGAADTSG
Trigger: CCCTGAGGTGTCTGCTGCTCCAGGATGGCCATGTCCCCTTGTGCAGGTGCACCTCGCCTCCCCTGACCTCACCCAGTCCCGCTTCACTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS GCA 90 bp GTGAGCCAAGTGAAGCGGGACTGGGTGAGGTCAGGGGAGGCGAGGTaGACCTGCACAAGGGGACATGGCCATCCTGGAGCAGCAGACACC +
Preference number: 5 (lower is better)
Translates to: VSQVKRDWVRSGEAR*TCTRGHGHPGAADT
Trigger: GGTGTCTGCTGCTCCAGGATGGCCATGTCCCCTTGTGCAGGTGCACCTCGCCTCCCCTGACCTCACCCAGTCCCGCTTCACTTGGCTCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS-3UTR CAA 90 bp TATGTCTGCTCTCCCGAGAGCGTCCAGCAAGGTCTTCCATGCAGACAGGGTGAGCGGACAGCGGTACCGTaGGCAGGCGCTCCTGGGCCC +
Preference number: 5 (lower is better)
Translates to: YVCSPESVQQGLPCRQGERTAVP*AGAPGP
Trigger: GGGCCCAGGAGCGCCTGCCAACGGTACCGCTGTCCG...CTCACCCTGTCTGCATGGAAGACCTTGCTGGACGCTCTCGGGAGAGCAGACATA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS CCA 90 bp TGGAGTGAGATGAGACTGCCGGGAGTGAGCCAAGTGAAGCGGGACTaGGTGAGGTCAGGGGAGGCGAGGTGCACCTGCACAAGGGGACAT +
Preference number: 5 (lower is better)
Translates to: WSEMRLPGVSQVKRD*VRSGEARCTCTRGH
Trigger: ATGTCCCCTTGTGCAGGTGCACCTCGCCTCCCCTGACCTCACCCAGTCCCGCTTCACTTGGCTCACTCCCGGCAGTCTCATCTCACTCCA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS TCA 90 bp GGAGGATGGCAGGTAAGAGAAGGGGGCAGCAAGGGATGCCTGGAGTaGGATGAGACTGCCGGGAGTGAGCCAAGTGAAGCGGGACTGGGT +
Preference number: 5 (lower is better)
Translates to: GGWQVREGGSKGCLE*DETAGSEPSEAGLG
Trigger: ACCCAGTCCCGCTTCACTTGGCTCACTCCCGGCAGTCTCATCTCACTCCAGGCATCCCTTGCTGCCCCCTTCTCTTACCTGCCATCCTCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS TCA 90 bp TCCCTCATCAGGGCTGGTGGCTGCGGGATCTACAGTAAACTCAAGTaGCTGGCGCCATGCCCTCTGGGGACAACACGACAGGGTCTTCTG +
Preference number: 5 (lower is better)
Translates to: SLIRAGGCGIYSKLK*LAPCPLGTTRQGLL
Trigger: CAGAAGACCCTGTCGTGTTGTCCCCAGAGGGCATGGCGCCAGTCACTTGAGTTTACTGTAGATCCCGCAGCCACCAGCCCTGATGAGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS-3UTR CAA 90 bp GCAACTTTTCTGAGACATGGCAACGAGGCAGAGTTAATCTCTTTGGCCCTCATCCGGACAGCGGTACCGTaGGCAGGCGCTCCTGGGCCC +
Preference number: 5 (lower is better)
Translates to: ATFLRHGNEAELISLALIRTAVP*AGAPGP
Trigger: GGGCCCAGGAGCGCCTGCCAACGGTACCGCTGTCCG...GATGAGGGCCAAAGAGATTAACTCTGCCTCGTTGCCATGTCTCAGAAAAGTTGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTATGCATCACTTGGCATaGACTACACCATGGAAAGCA +
Preference number: 5 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPMHHLA*TTPWKA
Trigger: TGCTTTCCATGGTGTAGTCAATGCCAAGTGATGCAT...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACTCAGCCTCCAGGCAGTaGACGGGCCGCGCGGGAGCC +
Preference number: 5 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDSASRQ*TGRAGA
Trigger: GGCTCCCGCGCGGCCCGTCAACTGCCTGGAGGCTGA...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp GAGCTGGGGCTGTTGAGCGGCACAGCCCAGGCACAACCATGCCAGGCTGGGCCTCAAGGAATAGTCATCTaGGGCGAACACATGCTAATA +
Preference number: 5 (lower is better)
Translates to: ELGLLSGTAQAQPCQAGPQGIVI*GEHMLI
Trigger: TATTAGCATGTGTTCGCCCAAGATGACTATTCCTTG...AGGCCCAGCCTGGCATGGTTGTGCCTGGGCTGTGCCGCTCAACAGCCCCAGCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGCAGCAATGGAACTCCTaGGAGATGGGGGCCCAAAGG +
Preference number: 5 (lower is better)
Translates to: GATCSERSKVGVRHCQDKQQWNS*EMGAQR
Trigger: CCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTG...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp ACAGTGAATACTACTGTGGCCCAGACACGGATCGAAAACACTTCTCCCAGTGGCGCCCTTGCACGGCCCTaGGCACACTCAATCTACCCC +
Preference number: 5 (lower is better)
Translates to: TVNTTVAQTRIENTSPSGALARP*AHSIYP
Trigger: GGGGTAGATTGAGTGTGCCAAGGGCCGTGCAAGGGC...GCCACTGGGAGAAGTGTTTTCGATCCGTGTCTGGGCCACAGTAGTATTCACTGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS GCA 90 bp AGGGTCACTTACTCAGCAAAGCGCCCCACGAAGAGGCCAACTCGCTaGTGGGATGGTCATTCCATAGCCGCTTCTTCTTGCCAGCAGAAA +
Preference number: 5 (lower is better)
Translates to: RVTYSAKRPTKRPTR*WDGHSIAASSCQQK
Trigger: TTTCTGCTGGCAAGAAGAAGCGGCTATGGAATGACCATCCCAGCAGCGAGTTGGCCTCTTCGTGGGGCGCTTTGCTGAGTAAGTGACCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CCA 90 bp TTACTCAGCAAAGCGCCCCACGAAGAGGCCAACTCGCTGCTGGGATaGTCATTCCATAGCCGCTTCTTCTTGCCAGCAGAAAGACGAAGC +
Preference number: 5 (lower is better)
Translates to: LLSKAPHEEANSLLG*SFHSRFFLPAERRS
Trigger: GCTTCGTCTTTCTGCTGGCAAGAAGAAGCGGCTATGGAATGACCATCCCAGCAGCGAGTTGGCCTCTTCGTGGGGCGCTTTGCTGAGTAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CCA 90 bp GTCACTTACTCAGCAAAGCGCCCCACGAAGAGGCCAACTCGCTGCTaGGATGGTCATTCCATAGCCGCTTCTTCTTGCCAGCAGAAAGAC +
Preference number: 5 (lower is better)
Translates to: VTYSAKRPTKRPTRC*DGHSIAASSCQQKD
Trigger: GTCTTTCTGCTGGCAAGAAGAAGCGGCTATGGAATGACCATCCCAGCAGCGAGTTGGCCTCTTCGTGGGGCGCTTTGCTGAGTAAGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS TCA 90 bp TTCATGGCAGGGTCTTTCCAGGTCAGCCGTAGCAACTGCCTTCAATaGGGCTGCCCACAAGCAAAAGTAGAGGTCCAGCAAGAGGCAGGA +
Preference number: 5 (lower is better)
Translates to: FMAGSFQVSRSNCLQ*GCPQAKVEVQQEAG
Trigger: TCCTGCCTCTTGCTGGACCTCTACTTTTGCTTGTGGGCAGCCTCATTGAAGGCAGTTGCTACGGCTGACCTGGAAAGACCCTGCCATGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564106.1
CDS GCA 90 bp CCTACGAGCAGGGTACATGCTCTCCTCCAGCGGCTTCCGGTTTCCTaGCTGGAGCTTGTTCTCATTCTTTTGAGGCTGTTAGAACTGCCT +
Preference number: 5 (lower is better)
Translates to: PTSRVHALLQRLPVS*LELVLILLRLLELP
Trigger: AGGCAGTTCTAACAGCCTCAAAAGAATGAGAACAAGCTCCAGGCAGGAAACCGGAAGCCGCTGGAGGAGAGCATGTACCCTGCTCGTAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS GCA 90 bp CATCAGACCTTCAGCCAGATTCAACTTTCCTACGAGCAGGGTACATaGTCTCCTCCAGCGGCTTCCGGTTTCCTGCCTGGAGCTTGTTCT +
Preference number: 5 (lower is better)
Translates to: HQTFSQIQLSYEQGT*SPPAASGFLPGACS
Trigger: AGAACAAGCTCCAGGCAGGAAACCGGAAGCCGCTGGAGGAGAGCATGTACCCTGCTCGTAGGAAAGTTGAATCTGGCTGAAGGTCTGATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS-3UTR CAA 90 bp TTAGTGAGCTCTGTAAAGCAATACTCAAACAGCTCCGTACGAAAAGGTGTCATTTCAGCCTCCAGGCAGTaGACGGGCCGCGCGGGAGCC +
Preference number: 5 (lower is better)
Translates to: LVSSVKQYSNSSVRKGVISASRQ*TGRAGA
Trigger: GGCTCCCGCGCGGCCCGTCAACTGCCTGGAGGCTGA...AATGACACCTTTTCGTACGGAGCTGTTTGAGTATTGCTTTACAGAGCTCACTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp GCCAGAACCTGCAGGAGGACCACCGGTAGAGATTCTAGAAGACAAAGAAGCCCTAAGTGTGAGAGCTCCTaGCCCAAGACTGAGCAGCTC +
Preference number: 5 (lower is better)
Translates to: ARTCRRTTGRDSRRQRSPKCESS*PKTEQL
Trigger: GAGCTGCTCAGTCTTGGGCAAGGAGCTCTCACACTT...AGGGCTTCTTTGTCTTCTAGAATCTCTACCGGTGGTCCTCCTGCAGGTTCTGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS GCA 90 bp CAAATCTCAGGTAGTTGTCACCTCCACTCTGCGGCACCCAACTGCTaGCATAAATTTCCATCATGGGCCTTTCTGCCTGCAGAGAGGCTC +
Preference number: 5 (lower is better)
Translates to: QISGSCHLHSAAPNC*HKFPSWAFLPAERL
Trigger: GAGCCTCTCTGCAGGCAGAAAGGCCCATGATGGAAATTTATGGCAGCAGTTGGGTGCCGCAGAGTGGAGGTGACAACTACCTGAGATTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569919.1
CDS GCA 90 bp TTGCAAATCTCAGGTAGTTGTCACCTCCACTCTGCGGCACCCAACTaGTGCCATAAATTTCCATCATGGGCCTTTCTGCCTGCAGAGAGG +
Preference number: 5 (lower is better)
Translates to: LQISGSCHLHSAAPN*CHKFPSWAFLPAER
Trigger: CCTCTCTGCAGGCAGAAAGGCCCATGATGGAAATTTATGGCAGCAGTTGGGTGCCGCAGAGTGGAGGTGACAACTACCTGAGATTTGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569919.1
CDS CCA 90 bp TCATTCCATAGCCGCTTCTTCTTGCCAGCAGAAAGACGAAGCCAGTaGCTAGCAGCCAACTCCCAGAACAAGCTGTCCTCTTATGAGTGC +
Preference number: 5 (lower is better)
Translates to: SFHSRFFLPAERRSQ*LAANSQNKLSSYEC
Trigger: GCACTCATAAGAGGACAGCTTGTTCTGGGAGTTGGCTGCTAGCCACTGGCTTCGTCTTTCTGCTGGCAAGAAGAAGCGGCTATGGAATGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS-3UTR CAA 90 bp GTCTATGTGGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGTAGAATATCCTGGAAGAGGTCTTaGTCTGCTTGGGAGCTGGGG +
Preference number: 5 (lower is better)
Translates to: VYVGWIPELQLRREGRRISWKRS*SAWELG
Trigger: CCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGA...TATTCTACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS TCA 90 bp CTAGCAGCCAACTCCCAGAACAAGCTGTCCTCTTATGAGTGCTTATaGCACTTAGGTAACAGGACTGGGCAAGTGACAAGACTGCCTGCC +
Preference number: 5 (lower is better)
Translates to: LAANSQNKLSSYECL*HLGNRTGQVTRLPA
Trigger: GGCAGGCAGTCTTGTCACTTGCCCAGTCCTGTTACCTAAGTGTCATAAGCACTCATAAGAGGACAGCTTGTTCTGGGAGTTGGCTGCTAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS-3UTR CAA 90 bp GTCTATGTGGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGTAGAATAAAGTGTGAGAGCTCCTaGCCCAAGACTGAGCAGCTC +
Preference number: 5 (lower is better)
Translates to: VYVGWIPELQLRREGRRIKCESS*PKTEQL
Trigger: GAGCTGCTCAGTCTTGGGCAAGGAGCTCTCACACTT...TATTCTACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACCAGCAATGGAACTCCTaGGAGATGGGGGCCCAAAGG +
Preference number: 5 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDQQWNS*EMGAQR
Trigger: CCTTTGGGCCCCCATCTCCAAGGAGTTCCATTGCTG...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCGCCCTTGCACGGCCCTaGGCACACTCAATCTACCCC +
Preference number: 5 (lower is better)
Translates to: RREGRRISSLTGSQGIVIALARP*AHSIYP
Trigger: GGGGTAGATTGAGTGTGCCAAGGGCCGTGCAAGGGC...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp GGAGCCACCTGCTCTGAGAGATCAAAAGTAGGTGTGCGGCACTGTCAGGACAAGAAACACCCCAACTCATaGCAATGCAGTCCAAATGTT +
Preference number: 5 (lower is better)
Translates to: GATCSERSKVGVRHCQDKKHPNS*QCSPNV
Trigger: AACATTTGGACTGCATTGCAATGAGTTGGGGTGTTT...CTTGTCCTGACAGTGCCGCACACCTACTTTTGATCTCTCAGAGCAGGTGGCTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAAAGAAGCAGTTGGCCCTaGGGGAGCGGGGAGATGATG +
Preference number: 5 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKRSSWP*GSGEMM
Trigger: CATCATCTCCCCGCTCCCCAAGGGCCAACTGCTTCT...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
50% GC, longest homopolymer 6 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTTCCTGGAAGAGGTCTTaGTCTGCTTGGGAGCTGGGG +
Preference number: 5 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFSWKRS*SAWELG
Trigger: CCCCAGCTCCCAAGCAGACAAAGACCTCTTCCAGGA...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS GCA 90 bp TGCCCACAAGCAAAAGTAGAGGTCCAGCAAGAGGCAGGAAGTCTATaGACTTCAGCAAGTGAATGTGATGAGACAGAACTAAGCAAAATC +
Preference number: 5 (lower is better)
Translates to: CPQAKVEVQQEAGSL*TSASECDETELSKI
Trigger: GATTTTGCTTAGTTCTGTCTCATCACATTCACTTGCTGAAGTGCATAGACTTCCTGCCTCTTGCTGGACCTCTACTTTTGCTTGTGGGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000564106.1
CDS-3UTR CAA 90 bp GTCTATGTGGGCTGGATTCCTGAACTACAGCTTAGAAGGGAAGGGCGTAGAATACAAGGAATAGTCATCTaGGGCGAACACATGCTAATA +
Preference number: 5 (lower is better)
Translates to: VYVGWIPELQLRREGRRIQGIVI*GEHMLI
Trigger: TATTAGCATGTGTTCGCCCAAGATGACTATTCCTTG...TATTCTACGCCCTTCCCTTCTAAGCTGTAGTTCAGGAATCCAGCCCACATAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS TCA 90 bp TCTCTTGAAAACTCCAAAAATTGGGCAATTCTGGACCCACACTCCTaGTCACTACATCAGACCTTCAGCCAGATTCAACTTTCCTACGAG +
Preference number: 5 (lower is better)
Translates to: SLENSKNWAILDPHS*SLHQTFSQIQLSYE
Trigger: CTCGTAGGAAAGTTGAATCTGGCTGAAGGTCTGATGTAGTGATCAGGAGTGTGGGTCCAGAATTGCCCAATTTTTGGAGTTTTCAAGAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS GCA 90 bp CTTTTAATGACGACAGACTATGGATCCTTTGAAACTATAGCACAGTaGTGTCCAGCAGAACTTTCTGGGAGGGCGAATATGTTCGTACCT +
Preference number: 5 (lower is better)
Translates to: LLMTTDYGSFETIAQ*CPAELSGRANMFVP
Trigger: AGGTACGAACATATTCGCCCTCCCAGAAAGTTCTGCTGGACAGCACTGTGCTATAGTTTCAAAGGATCCATAGTCTGTCGTCATTAAAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000565634.5
CDS CCA 90 bp ACAGATTTCTGGCTTCTCTTGAAAACTCCAAAAATTGGGCAATTCTaGACCCACACTCCTGATCACTACATCAGACCTTCAGCCAGATTC +
Preference number: 5 (lower is better)
Translates to: TDFWLLLKTPKIGQF*THTPDHYIRPSARF
Trigger: GAATCTGGCTGAAGGTCTGATGTAGTGATCAGGAGTGTGGGTCCAGAATTGCCCAATTTTTGGAGTTTTCAAGAGAAGCCAGAAATCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS-3UTR CAA 90 bp AGAAGGGAAGGGCGTAGAATATCATCATTAACTGGCTCACAAGGAATAGTCATCCCAGGAAAGGAAGCGTaGATGAGGTACCAAAAGAAG +
Preference number: 5 (lower is better)
Translates to: RREGRRISSLTGSQGIVIPGKEA*MRYQKK
Trigger: CTTCTTTTGGTACCTCATCAACGCTTCCTTTCCTGG...GATGACTATTCCTTGTGAGCCAGTTAATGATGATATTCTACGCCCTTCCCTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp ACAGGCTGTTTCTTGGATGCTGCACTTCACAAATGTACTAATTGCCCCCAAAAAATGCATCACTTGGCATaGACTACACCATGGAAAGCA +
Preference number: 5 (lower is better)
Translates to: TGCFLDAALHKCTNCPQKMHHLA*TTPWKA
Trigger: TGCTTTCCATGGTGTAGTCAATGCCAAGTGATGCAT...TTTTTGGGGGCAATTAGTACATTTGTGAAGTGCAGCATCCAAGAAACAGCCTGT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp GAGACTGCTTACGGAACTCAAAGACTAAACAGTGAATACTACTGTGGCCCAGACATGCAGTCCAAATGTTaGCAACCAAAGATGTATGAA +
Preference number: 5 (lower is better)
Translates to: ETAYGTQRLNSEYYCGPDMQSKC*QPKMYE
Trigger: TTCATACATCTTTGGTTGCAAACATTTGGACTGCAT...GTCTGGGCCACAGTAGTATTCACTGTTTAGTCTTTGAGTTCCGTAAGCAGTCTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTCCAGGAAAGGAAGCGTaGATGAGGTACCAAAAGAAG +
Preference number: 5 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFPGKEA*MRYQKK
Trigger: CTTCTTTTGGTACCTCATCAACGCTTCCTTTCCTGG...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS-3UTR CAA 90 bp CAATGGACAGAAATATGTGGCTTACTAACCCACCCCCATTTTGCATACAATTTTAAACACCCCAACTCATaGCAATGCAGTCCAAATGTT +
Preference number: 5 (lower is better)
Translates to: QWTEICGLLTHPHFAYNFKHPNS*QCSPNV
Trigger: AACATTTGGACTGCATTGCAATGAGTTGGGGTGTTT...AAAATTGTATGCAAAATGGGGGTGGGTTAGTAAGCCACATATTTCTGTCCATTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000395878.8
ENST00000567212.5
CDS CCA 72 bp GGGGTTAGGGGGTGGGCGCTCGCCGCGGGCTGGGCTTaGGAACGGACGCTGTCCGGGCGCCGCCGGACCTCC +
Preference number: 6 (lower is better)
Translates to: GVRGWALAAGWA*ERTLSGRRRTS
Trigger: GGAGGTCCGGCGGCGCCCGGACAGCGTCCGTTCCCAAGCCCAGCCCGCGGCGAGCGCCCACCCCCTAACCCC
79% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000566669.1
CDS CCA 72 bp TGCAAGGGGGTTAGGGGGTGGGCGCTCGCCGCGGGCTaGGCTTGGGAACGGACGCTGTCCGGGCGCCGCCGG +
Preference number: 6 (lower is better)
Translates to: CKGVRGWALAAG*AWERTLSGRRR
Trigger: CCGGCGGCGCCCGGACAGCGTCCGTTCCCAAGCCCAGCCCGCGGCGAGCGCCCACCCCCTAACCCCCTTGCA
78% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000566669.1
CDS CCA 72 bp GCCAGGTTCCTCCATGCCTGCAAGGGGGTTAGGGGGTaGGCGCTCGCCGCGGGCTGGGCTTGGGAACGGACG +
Preference number: 6 (lower is better)
Translates to: ARFLHACKGVRG*ALAAGWAWERT
Trigger: CGTCCGTTCCCAAGCCCAGCCCGCGGCGAGCGCCCACCCCCTAACCCCCTTGCAGGCATGGAGGAACCTGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000566669.1
CDS CCA 72 bp GGCGAGGTGCACCTGCACAAGGGGACATGGCCATCCTaGAGCAGCAGACACCTCAGGGACGGGGGCGCAGGG +
Preference number: 6 (lower is better)
Translates to: GEVHLHKGTWPS*SSRHLRDGGAG
Trigger: CCCTGCGCCCCCGTCCCTGAGGTGTCTGCTGCTCCAGGATGGCCATGTCCCCTTGTGCAGGTGCACCTCGCC
69% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS GCA 72 bp CGGGACTGGGTGAGGTCAGGGGAGGCGAGGTGCACCTaGACAAGGGGACATGGCCATCCTGGAGCAGCAGAC +
Preference number: 6 (lower is better)
Translates to: RDWVRSGEARCT*TRGHGHPGAAD
Trigger: GTCTGCTGCTCCAGGATGGCCATGTCCCCTTGTGCAGGTGCACCTCGCCTCCCCTGACCTCACCCAGTCCCG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CCA 72 bp GTCAGGGGAGGCGAGGTGCACCTGCACAAGGGGACATaGCCATCCTGGAGCAGCAGACACCTCAGGGACGGG +
Preference number: 6 (lower is better)
Translates to: VRGGEVHLHKGT*PSWSSRHLRDG
Trigger: CCCGTCCCTGAGGTGTCTGCTGCTCCAGGATGGCCATGTCCCCTTGTGCAGGTGCACCTCGCCTCCCCTGAC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CCA 72 bp ATGAGACTGCCGGGAGTGAGCCAAGTGAAGCGGGACTaGGTGAGGTCAGGGGAGGCGAGGTGCACCTGCACA +
Preference number: 6 (lower is better)
Translates to: MRLPGVSQVKRD*VRSGEARCTCT
Trigger: TGTGCAGGTGCACCTCGCCTCCCCTGACCTCACCCAGTCCCGCTTCACTTGGCTCACTCCCGGCAGTCTCAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS GCA 72 bp GCCTGGATTTTAGGGCTAGATTCTATACCACGACCCTaGTCCCTTCCCCGGCCTCCCTCCTCGAGTCCTCCG +
Preference number: 6 (lower is better)
Translates to: AWILGLDSIPRP*SLPRPPSSSPP
Trigger: CGGAGGACTCGAGGAGGGAGGCCGGGGAAGGGAGCAGGGTCGTGGTATAGAATCTAGCCCTAAAATCCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CAA 90 bp GAGGCCAACTCGCTGCTGGGATGGTCATTCCATAGCCGCTTCTTCTaGCCAGCAGAAAGACGAAGCCAGTGGCTAGCAGCCAACTCCCAG +
Preference number: 6 (lower is better)
Translates to: EANSLLGWSFHSRFF*PAERRSQWLAANSQ
Trigger: CTGGGAGTTGGCTGCTAGCCACTGGCTTCGTCTTTCTGCTGGCAAGAAGAAGCGGCTATGGAATGACCATCCCAGCAGCGAGTTGGCCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CCA 72 bp TCAGCAAAGCGCCCCACGAAGAGGCCAACTCGCTGCTaGGATGGTCATTCCATAGCCGCTTCTTCTTGCCAG +
Preference number: 6 (lower is better)
Translates to: SAKRPTKRPTRC*DGHSIAASSCQ
Trigger: CTGGCAAGAAGAAGCGGCTATGGAATGACCATCCCAGCAGCGAGTTGGCCTCTTCGTGGGGCGCTTTGCTGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS GCA 72 bp TACTCAGCAAAGCGCCCCACGAAGAGGCCAACTCGCTaGTGGGATGGTCATTCCATAGCCGCTTCTTCTTGC +
Preference number: 6 (lower is better)
Translates to: YSAKRPTKRPTR*WDGHSIAASSC
Trigger: GCAAGAAGAAGCGGCTATGGAATGACCATCCCAGCAGCGAGTTGGCCTCTTCGTGGGGCGCTTTGCTGAGTA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CCA 72 bp AAAGCGCCCCACGAAGAGGCCAACTCGCTGCTGGGATaGTCATTCCATAGCCGCTTCTTCTTGCCAGCAGAA +
Preference number: 6 (lower is better)
Translates to: KAPHEEANSLLG*SFHSRFFLPAE
Trigger: TTCTGCTGGCAAGAAGAAGCGGCTATGGAATGACCATCCCAGCAGCGAGTTGGCCTCTTCGTGGGGCGCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CAA 72 bp TCGCTGCTGGGATGGTCATTCCATAGCCGCTTCTTCTaGCCAGCAGAAAGACGAAGCCAGTGGCTAGCAGCC +
Preference number: 6 (lower is better)
Translates to: SLLGWSFHSRFF*PAERRSQWLAA
Trigger: GGCTGCTAGCCACTGGCTTCGTCTTTCTGCTGGCAAGAAGAAGCGGCTATGGAATGACCATCCCAGCAGCGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS GCA 72 bp TTCAGCCAGATTCAACTTTCCTACGAGCAGGGTACATaGTCTCCTCCAGCGGCTTCCGGTTTCCTGCCTGGA +
Preference number: 6 (lower is better)
Translates to: FSQIQLSYEQGT*SPPAASGFLPG
Trigger: TCCAGGCAGGAAACCGGAAGCCGCTGGAGGAGAGCATGTACCCTGCTCGTAGGAAAGTTGAATCTGGCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CCA 72 bp TTCCCATCCAGACTTCTCTGCCTGCACCTATCTTCATaGCAGGGTCTTTCCAGGTCAGCCGTAGCAACTGCC +
Preference number: 6 (lower is better)
Translates to: FPSRLLCLHLSS*QGLSRSAVATA
Trigger: GGCAGTTGCTACGGCTGACCTGGAAAGACCCTGCCATGAAGATAGGTGCAGGCAGAGAAGTCTGGATGGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564106.1
CDS CCA 72 bp AGCCGCTTCTTCTTGCCAGCAGAAAGACGAAGCCAGTaGCTAGCAGCCAACTCCCAGAACAAGCTGTCCTCT +
Preference number: 6 (lower is better)
Translates to: SRFFLPAERRSQ*LAANSQNKLSS
Trigger: AGAGGACAGCTTGTTCTGGGAGTTGGCTGCTAGCCACTGGCTTCGTCTTTCTGCTGGCAAGAAGAAGCGGCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS TCA 72 bp GGGTCTTTCCAGGTCAGCCGTAGCAACTGCCTTCAATaGGGCTGCCCACAAGCAAAAGTAGAGGTCCAGCAA +
Preference number: 6 (lower is better)
Translates to: GSFQVSRSNCLQ*GCPQAKVEVQQ
Trigger: TTGCTGGACCTCTACTTTTGCTTGTGGGCAGCCTCATTGAAGGCAGTTGCTACGGCTGACCTGGAAAGACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000564106.1
CDS GCA 72 bp GGTAGTTGTCACCTCCACTCTGCGGCACCCAACTGCTaGCATAAATTTCCATCATGGGCCTTTCTGCCTGCA +
Preference number: 6 (lower is better)
Translates to: GSCHLHSAAPNC*HKFPSWAFLPA
Trigger: TGCAGGCAGAAAGGCCCATGATGGAAATTTATGGCAGCAGTTGGGTGCCGCAGAGTGGAGGTGACAACTACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000567264.1
ENST00000569919.1
CDS GCA 72 bp TCAGGTAGTTGTCACCTCCACTCTGCGGCACCCAACTaGTGCCATAAATTTCCATCATGGGCCTTTCTGCCT +
Preference number: 6 (lower is better)
Translates to: SGSCHLHSAAPN*CHKFPSWAFLP
Trigger: AGGCAGAAAGGCCCATGATGGAAATTTATGGCAGCAGTTGGGTGCCGCAGAGTGGAGGTGACAACTACCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569919.1
CDS GCA 72 bp AGGGTACATGCTCTCCTCCAGCGGCTTCCGGTTTCCTaGCTGGAGCTTGTTCTCATTCTTTTGAGGCTGTTA +
Preference number: 6 (lower is better)
Translates to: RVHALLQRLPVS*LELVLILLRLL
Trigger: TAACAGCCTCAAAAGAATGAGAACAAGCTCCAGGCAGGAAACCGGAAGCCGCTGGAGGAGAGCATGTACCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CAA 90 bp CTCCAGCGGCTTCCGGTTTCCTGCCTGGAGCTTGTTCTCATTCTTTaGAGGCTGTTAGAACTGCCTCCTCCTACACAAGCTAGCAGAGTT +
Preference number: 6 (lower is better)
Translates to: LQRLPVSCLELVLIL*RLLELPPPTQASRV
Trigger: AACTCTGCTAGCTTGTGTAGGAGGAGGCAGTTCTAACAGCCTCAAAAGAATGAGAACAAGCTCCAGGCAGGAAACCGGAAGCCGCTGGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CAA 72 bp CTTCCGGTTTCCTGCCTGGAGCTTGTTCTCATTCTTTaGAGGCTGTTAGAACTGCCTCCTCCTACACAAGCT +
Preference number: 6 (lower is better)
Translates to: LPVSCLELVLIL*RLLELPPPTQA
Trigger: AGCTTGTGTAGGAGGAGGCAGTTCTAACAGCCTCAAAAGAATGAGAACAAGCTCCAGGCAGGAAACCGGAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CCA 72 bp CAGAGGCTGGGCAGCTTACTACTGATAAAGGGAAGATaGACAGGCTCTACAGAAGAGAATGATCTAGCAGAG +
Preference number: 6 (lower is better)
Translates to: QRLGSLLLIKGR*TGSTEENDLAE
Trigger: CTCTGCTAGATCATTCTCTTCTGTAGAGCCTGTCCATCTTCCCTTTATCAGTAGTAAGCTGCCCAGCCTCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564106.1
CDS GCA 72 bp ACGACAGACTATGGATCCTTTGAAACTATAGCACAGTaGTGTCCAGCAGAACTTTCTGGGAGGGCGAATATG +
Preference number: 6 (lower is better)
Translates to: TTDYGSFETIAQ*CPAELSGRANM
Trigger: CATATTCGCCCTCCCAGAAAGTTCTGCTGGACAGCACTGTGCTATAGTTTCAAAGGATCCATAGTCTGTCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000565634.5
CDS TCA 72 bp AACTCCCAGAACAAGCTGTCCTCTTATGAGTGCTTATaGCACTTAGGTAACAGGACTGGGCAAGTGACAAGA +
Preference number: 6 (lower is better)
Translates to: NSQNKLSSYECL*HLGNRTGQVTR
Trigger: TCTTGTCACTTGCCCAGTCCTGTTACCTAAGTGTCATAAGCACTCATAAGAGGACAGCTTGTTCTGGGAGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CCA 72 bp TGGCTTCTCTTGAAAACTCCAAAAATTGGGCAATTCTaGACCCACACTCCTGATCACTACATCAGACCTTCA +
Preference number: 6 (lower is better)
Translates to: WLLLKTPKIGQF*THTPDHYIRPS
Trigger: TGAAGGTCTGATGTAGTGATCAGGAGTGTGGGTCCAGAATTGCCCAATTTTTGGAGTTTTCAAGAGAAGCCA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS TCA 72 bp GGAAACTGGGTTTGGCAATGGTATAGTAAAGGTCTCTaGGGGCAGAATTGTATCTTCCCTGGGATTATTTTT +
Preference number: 6 (lower is better)
Translates to: GNWVWQWYSKGL*GQNCIFPGIIF
Trigger: AAAAATAATCCCAGGGAAGATACAATTCTGCCCTCAGAGACCTTTACTATACCATTGCCAAACCCAGTTTCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000566136.1
CDS CAA 72 bp TCCCTTGAAAGAGAGGATGAAGAAAGCCTTAGTGTTTaGGCTCAAAAGCTTTTAATGACGACAGACTATGGA +
Preference number: 6 (lower is better)
Translates to: SLEREDEESLSV*AQKLLMTTDYG
Trigger: TCCATAGTCTGTCGTCATTAAAAGCTTTTGAGCCAAAACACTAAGGCTTTCTTCATCCTCTCTTTCAAGGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565634.5
CDS CAA 90 bp AATGAAATGAAACAGCTGACTACATTTCGTCGTGTTACTATTCCCTaGAAAGAGAGGATGAAGAAAGCCTTAGTGTTTTGGCTCAAAAGC +
Preference number: 6 (lower is better)
Translates to: NEMKQLTTFRRVTIP*KERMKKALVFWLKS
Trigger: GCTTTTGAGCCAAAACACTAAGGCTTTCTTCATCCTCTCTTTCAAGGGAATAGTAACACGACGAAATGTAGTCAGCTGTTTCATTTCATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565634.5
CDS CAA 90 bp TGTTACTATTCCCTTGAAAGAGAGGATGAAGAAAGCCTTAGTGTTTaGGCTCAAAAGCTTTTAATGACGACAGACTATGGATCCTTTGAA +
Preference number: 6 (lower is better)
Translates to: CYYSLEREDEESLSV*AQKLLMTTDYGSFE
Trigger: TTCAAAGGATCCATAGTCTGTCGTCATTAAAAGCTTTTGAGCCAAAACACTAAGGCTTTCTTCATCCTCTCTTTCAAGGGAATAGTAACA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000565634.5