RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBE2C (Homo sapiens)

Ensembl gene IDs: ENSG00000175063

Ensembl transcript IDs: ENST00000335046.7, ENST00000372568.4, ENST00000405520.5, ENST00000496085.1, ENST00000617055.4

Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS TCA 90 bp CTCAACTTCTCCCTTCCCCTGTCTCGGCCAAGTCACGAGGGTCCTTaGGCGTCTTCATCTAGGCCCACCAGGGAAGGAGTCTGGCAGCGC +
Preference number: 5 (lower is better)
Translates to: LNFSLPLSRPSHEGP*ASSSRPTREGVWQR
Trigger: GCGCTGCCAGACTCCTTCCCTGGTGGGCCTAGATGAAGACGCTCAAGGACCCTCGTGACTTGGCCGAGACAGGGGAAGGGAGAAGTTGAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372568.4
CDS TCA 90 bp CTCATGTCCCAACCCAAGCCCCACACAAGGGGCTTGCTAGAATCTTaGGTTTCTCTGGGACCGGACAGTAGACAAACTGTTGAGCTGGTT +
Preference number: 5 (lower is better)
Translates to: LMSQPKPHTRGLLES*VSLGPDSRQTVELV
Trigger: AACCAGCTCAACAGTTTGTCTACTGTCCGGTCCCAGAGAAACTCAAGATTCTAGCAAGCCCCTTGTGTGGGGCTTGGGTTGGGACATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335046.7
ENST00000617055.4
CDS GCA 90 bp GCTTATACCTCAGGTCTTCATATACCTGGCATTTGGAGAAACAGTTaGAGAGTAAGCTCCAGCAGCAGCCTCATGTCCCAACCCAAGCCC +
Preference number: 5 (lower is better)
Translates to: AYTSGLHIPGIWRNS*RVSSSSSLMSQPKP
Trigger: GGGCTTGGGTTGGGACATGAGGCTGCTGCTGGAGCTTACTCTGCAACTGTTTCTCCAAATGCCAGGTATATGAAGACCTGAGGTATAAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000496085.1
CDS CAA 72 bp CTGCAACTGCAGGACTGCGGGCCCGCCCGCCCGCGTTaGAATTGTAACCCTCTGGGGGCGTCGACCAATCAA +
Preference number: 6 (lower is better)
Translates to: LQLQDCGPARPR*NCNPLGASTNQ
Trigger: TTGATTGGTCGACGCCCCCAGAGGGTTACAATTCAAACGCGGGCGGGCGGGCCCGCAGTCCTGCAGTTGCAG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000405520.5
ENST00000617055.4
CDS TCA 72 bp TGCAACTGCAGGACTGCGGGCCCGCCCGCCCGCGTTTaGATTGTAACCCTCTGGGGGCGTCGACCAATCAAT +
Preference number: 6 (lower is better)
Translates to: CNCRTAGPPARV*IVTLWGRRPIN
Trigger: ATTGATTGGTCGACGCCCCCAGAGGGTTACAATTCAAACGCGGGCGGGCGGGCCCGCAGTCCTGCAGTTGCA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000405520.5
ENST00000617055.4
CDS TCA 72 bp TCCCTTCCCCTGTCTCGGCCAAGTCACGAGGGTCCTTaGGCGTCTTCATCTAGGCCCACCAGGGAAGGAGTC +
Preference number: 6 (lower is better)
Translates to: SLPLSRPSHEGP*ASSSRPTREGV
Trigger: GACTCCTTCCCTGGTGGGCCTAGATGAAGACGCTCAAGGACCCTCGTGACTTGGCCGAGACAGGGGAAGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000372568.4
CDS TCA 72 bp TGGGACCGGACAGTAGACAAACTGTTGAGCTGGTTCTaGTGCTCCCCACTGCTGTTCCAGCTGCTCCATGGA +
Preference number: 6 (lower is better)
Translates to: WDRTVDKLLSWF*CSPLLFQLLHG
Trigger: TCCATGGAGCAGCTGGAACAGCAGTGGGGAGCATCAGAACCAGCTCAACAGTTTGTCTACTGTCCGGTCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000335046.7
CDS TCA 72 bp CAACCCAAGCCCCACACAAGGGGCTTGCTAGAATCTTaGGTTTCTCTGGGACCGGACAGTAGACAAACTGTT +
Preference number: 6 (lower is better)
Translates to: QPKPHTRGLLES*VSLGPDSRQTV
Trigger: AACAGTTTGTCTACTGTCCGGTCCCAGAGAAACTCAAGATTCTAGCAAGCCCCTTGTGTGGGGCTTGGGTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000335046.7
ENST00000617055.4
CDS GCA 72 bp CTATCAATGTTGGGTTCTGGCATTTGGAGAAACAGTTaGAGAGTAAGCTCCAGCAGCAGCCTCATGTCCCAA +
Preference number: 6 (lower is better)
Translates to: LSMLGSGIWRNS*RVSSSSSLMSQ
Trigger: TTGGGACATGAGGCTGCTGCTGGAGCTTACTCTGCAACTGTTTCTCCAAATGCCAGAACCCAACATTGATAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000335046.7
ENST00000617055.4
CDS GCA 72 bp TCAGGTCTTCATATACCTGGCATTTGGAGAAACAGTTaGAGAGTAAGCTCCAGCAGCAGCCTCATGTCCCAA +
Preference number: 6 (lower is better)
Translates to: SGLHIPGIWRNS*RVSSSSSLMSQ
Trigger: TTGGGACATGAGGCTGCTGCTGGAGCTTACTCTGCAACTGTTTCTCCAAATGCCAGGTATATGAAGACCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000496085.1