RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for UBA3 (Homo sapiens)

Ensembl gene IDs: ENSG00000144744

Ensembl transcript IDs: ENST00000349511.8, ENST00000361055.9, ENST00000415609.6, ENST00000461522.1, ENST00000461934.5, ENST00000464605.1, ENST00000465108.5, ENST00000465627.5, ENST00000466763.5, ENST00000485424.1, ENST00000493957.5, ENST00000630585.1

Found 134 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR CCA 90 bp TGTGGGGTGGTGACATCAGCAACCGCCAGTTCTTGTCCATCAACAAGCCCCAATGGTGGCTGTGATGGCTaGAGATTTCATTTGCAGAGA +
Preference number: 2 (lower is better)
Translates to: CGVVTSATASSCPSTSPNGGCDG*RFHLQR
Trigger: TCTCTGCAAATGAAATCTCCAGCCATCACAGCCACC...ATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCTGATGTCACCACCCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR TCA 90 bp GGGGTGGTGACATCAGCAACCGCCAGTTCTTGTCCATCAACAAGCCCCAATTCTCTTTTTACTACCCCTTaGGTGAGCCTATACGTAACA +
Preference number: 2 (lower is better)
Translates to: GVVTSATASSCPSTSPNSLFTTP*VSLYVT
Trigger: TGTTACGTATAGGCTCACTCAAGGGGTAGTAAAAAG...AGAATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCTGATGTCACCACCCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR GCA 90 bp GCAACCGCCAGTTCTTGTCCATCAACAAGCCCCAATTCTTTCAATGTTTTGGAGAGTGGCACACACAGCTaGAATGACTGCATTTGTGGA +
Preference number: 2 (lower is better)
Translates to: ATASSCPSTSPNSFNVLESGTHS*NDCICG
Trigger: TCCACAAATGCAGTCATTGCAGCTGTGTGTGCCACT...CTCCAAAACATTGAAAGAATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR CCA 90 bp TGGGGTGGTGACATCAGCAACCGCCAGTTCTTGTCCATCAACAAGCCCCAATTCTGTTTTGGAGAGATTTaGCCTTGTTCGTTCTTCAAT +
Preference number: 2 (lower is better)
Translates to: WGGDISNRQFLSINKPQFCFGEI*PCSFFN
Trigger: ATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACA...GAATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCTGATGTCACCACCCCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR CCA 90 bp TTTCCCTCTAGGGTGGCTGTGATGGCTGGAGATTTCATTTGCAGAGAAGCACTACTATCAAAGGGACAATaGAGCTTGGATCTAAGACAC +
Preference number: 2 (lower is better)
Translates to: FPSRVAVMAGDFICREALLSKGQ*SLDLRH
Trigger: GTGTCTTAGATCCAAGCTCCATTGTCCCTTTGATAG...TAGTGCTTCTCTGCAAATGAAATCTCCAGCCATCACAGCCACCCTAGAGGGAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR CCA 90 bp CCTTCTCCAAAAGGCTGCTCCTTAGGCCACTGCAACATCCTTACATACTCAATACTATCAAAGGGACAATaGAGCTTGGATCTAAGACAC +
Preference number: 2 (lower is better)
Translates to: PSPKGCSLGHCNILTYSILSKGQ*SLDLRH
Trigger: GTGTCTTAGATCCAAGCTCCATTGTCCCTTTGATAG...TATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR CCA 90 bp GGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTGCATTTGTGGAAAAATTAACCTGTGGTaGATAAAGTTCCAGCGTGCA +
Preference number: 2 (lower is better)
Translates to: GYFKNLSGTHSCNDCICGKINLW*IKFQRA
Trigger: TGCACGCTGGAACTTTATCCACCACAGGTTAATTTT...TCCACAAATGCAGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR CCA 90 bp TATGCACTTGTGGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTAAAATTAACCTGTGGTaGATAAAGTTCCAGCGTGCA +
Preference number: 2 (lower is better)
Translates to: YALVAILKTSVAHTAAMTKINLW*IKFQRA
Trigger: TGCACGCTGGAACTTTATCCACCACAGGTTAATTTT...AGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCCACAAGTGCATA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR GCA 90 bp CTCTCTAGGGATTTTTGGAAAATCCATTGTATATGTTCAGGATCATCTCCATCTGATAAAGTTCCAGCGTaGATTCGATACAAGCAGTCA +
Preference number: 2 (lower is better)
Translates to: LSRDFWKIHCICSGSSPSDKVPA*IRYKQS
Trigger: TGACTGCTTGTATCGAATGCACGCTGGAACTTTATC...AGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAATCCCTAGAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR GCA 90 bp ATTTTGAGGAAGCTGGCTACAAGCTGGGCAGTTTTCCTTTCTTTCTGCTTCAAAATTTGTGGAAGCTACTaGAGGAATGATTCTTTTTAC +
Preference number: 2 (lower is better)
Translates to: ILRKLATSWAVFLSFCFKICGSY*RNDSFY
Trigger: GTAAAAAGAATCATTCCTGCAGTAGCTTCCACAAAT...TTTGAAGCAGAAAGAAAGGAAAACTGCCCAGCTTGTAGCCAGCTTCCTCAAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR GCA 90 bp ATTTTTGGAAAATCCATTGTATATGTTCAGGATCATCTCCATCTAATGGAACCCGATAAAGTTCCAGCGTaGATTCGATACAAGCAGTCA +
Preference number: 2 (lower is better)
Translates to: IFGKSIVYVQDHLHLMEPDKVPA*IRYKQS
Trigger: TGACTGCTTGTATCGAATGCACGCTGGAACTTTATC...GGGTTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR CCA 90 bp AGCCCCAATTCTTTCAATGTTTTGGAGAGATTTGGCCTTGTTCGTTCTTCAATAGCAGAGAAGCACTATTaGTTAGATAATCCAAAACCT +
Preference number: 2 (lower is better)
Translates to: SPNSFNVLERFGLVRSSIAEKHY*LDNPKP
Trigger: AGGTTTTGGATTATCTAACCAATAGTGCTTCTCTGC...TATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGGGCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR GCA 90 bp TTCTGCTTCAAATGTGTATGTATACAGCCCATCTACATCATTAAACACCAAGTAATTTGTGGAAGCTACTaGAGGAATGATTCTTTTTAC +
Preference number: 2 (lower is better)
Translates to: FCFKCVCIQPIYIIKHQVICGSY*RNDSFY
Trigger: GTAAAAAGAATCATTCCTGCAGTAGCTTCCACAAAT...TACTTGGTGTTTAATGATGTAGATGGGCTGTATACATACACATTTGAAGCAGAA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR CAA 90 bp TGTGGGGTGGTGACATCAGCAACCGCCAGTTCTTGTCCATCAACAAGCCCCAATAGAAAACTGAATATTTaGAGGAAGCTGGCTACAAGC +
Preference number: 3 (lower is better)
Translates to: CGVVTSATASSCPSTSPNRKLNI*RKLATS
Trigger: GCTTGTAGCCAGCTTCCTCAAAATATTCAGTTTTCT...ATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCTGATGTCACCACCCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR CAA 90 bp GTGCATTCGATACAAGCAGTCATTCCAGGCAGAATCACCCGGGCATTTCCTTTAAAGGGACAATGGAGCTaGGATCTAAGACACCATCTT +
Preference number: 3 (lower is better)
Translates to: VHSIQAVIPGRITRAFPLKGQWS*DLRHHL
Trigger: AAGATGGTGTCTTAGATCCAAGCTCCATTGTCCCTT...TAAAGGAAATGCCCGGGTGATTCTGCCTGGAATGACTGCTTGTATCGAATGCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000461934.5
3UTR-3UTR CAA 90 bp CCCCAATTCTTTCAATGTTTTGGAGAGATTTGGCCTTGTTCGTTCTTCAATAGATCTTTTTACTACCCCTaGAGTGAGCCTATACGTAAC +
Preference number: 3 (lower is better)
Translates to: PQFFQCFGEIWPCSFFNRSFYYP*SEPIRN
Trigger: GTTACGTATAGGCTCACTCAAGGGGTAGTAAAAAGA...TCTATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGAAAGAAGCAATACATTaGCTCATAATCTCTCTCTCC +
Preference number: 3 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMKEAIH*LIISLS
Trigger: GGAGAGAGAGATTATGAGCAAATGTATTGCTTCTTT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
3UTR-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGTTAAAGGGACACCTTTaGTGTATTTGGGTACTCAAA +
Preference number: 3 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMLKGHL*CIWVLK
Trigger: TTTGAGTACCCAAATACACAAAAGGTGTCCCTTTAA...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR TCA 90 bp GTTCCAGCGTGCATTCGATACAAGCAGTCATTCCAGGCAGAATCACCCGGGCATCAGTCTGTGGGGTGGTaGCATCAGCAACCGCCAGTT +
Preference number: 4 (lower is better)
Translates to: VPACIRYKQSFQAESPGHQSVGW*HQQPPV
Trigger: AACTGGCGGTTGCTGATGTCACCACCCCACAGACTG...ATGCCCGGGTGATTCTGCCTGGAATGACTGCTTGTATCGAATGCACGCTGGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR TCA 90 bp GTGGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTGCATTTGTGCAGTCTGTGGGGTGGTaGCATCAGCAACCGCCAGTT +
Preference number: 4 (lower is better)
Translates to: VAILKTSVAHTAAMTAFVQSVGW*HQQPPV
Trigger: AACTGGCGGTTGCTGATGTCACCACCCCACAGACTG...CACAAATGCAGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCCAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR GCA 90 bp GCATTCGATACAAGCAGTCATTCCAGGCAGAATCACCCGGGCATTTCCTTTAAACCTTCTCCAAAAGGCTaGTCCTTAGGCCACTGCAAC +
Preference number: 4 (lower is better)
Translates to: AFDTSSHSRQNHPGISFKPSPKG*SLGHCN
Trigger: GTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG...TTTAAAGGAAATGCCCGGGTGATTCTGCCTGGAATGACTGCTTGTATCGAATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp GGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTGCATTTGTGGAACCATCAACAGCCATTaGCTCCTCGCCATCCGCCAT +
Preference number: 4 (lower is better)
Translates to: GYFKNLSGTHSCNDCICGTINSH*LLAIRH
Trigger: ATGGCGGATGGCGAGGAGCCAATGGCTGTTGATGGT...TCCACAAATGCAGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR GCA 90 bp AAAGTTCCAGCGTGCATTCGATACAAGCAGTCATTCCAGGCAGAATCACCCGGGGATAAAGTTCCAGCGTaGATTCGATACAAGCAGTCA +
Preference number: 4 (lower is better)
Translates to: KVPACIRYKQSFQAESPGDKVPA*IRYKQS
Trigger: TGACTGCTTGTATCGAATGCACGCTGGAACTTTATC...CCCGGGTGATTCTGCCTGGAATGACTGCTTGTATCGAATGCACGCTGGAACTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR TCA 90 bp GTGGTGGATAAAGTTCCAGCGTGCATTCGATACAAGCAGTCATTCCAGGCAGAAAGCCGCCAGCTCCAATaGCTAGAACTTTACATGTAT +
Preference number: 4 (lower is better)
Translates to: VVDKVPACIRYKQSFQAESRQLQ*LELYMY
Trigger: ATACATGTAAAGTTCTAGTCATTGGAGCTGGCGGCT...TTCTGCCTGGAATGACTGCTTGTATCGAATGCACGCTGGAACTTTATCCACCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000465627.5
CDS-3UTR GCA 90 bp CCTTCTCCAAAAGGCTGCTCCTTAGGCCACTGCAACATCCTTACATACTCAATAAGTGGCACACACAGCTaGAATGACTGCATTTGTGGA +
Preference number: 4 (lower is better)
Translates to: PSPKGCSLGHCNILTYSISGTHS*NDCICG
Trigger: TCCACAAATGCAGTCATTGCAGCTGTGTGTGCCACT...TATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp CCTTCTCCAAAAGGCTGCTCCTTAGGCCACTGCAACATCCTTACATACTCAATAAGGAACTTCTTTACATaGTTCCAGCGACCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: PSPKGCSLGHCNILTYSIRNFFT*FQRPSQ
Trigger: CTGGGAAGGTCGCTGGAACCATGTAAAGAAGTTCCT...TATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp TGTGGGGTGGTGACATCAGCAACCGCCAGTTCTTGTCCATCAACAAGCCCCAATGCAGAGAAGCACTATTaGTTAGATAATCCAAAACCT +
Preference number: 4 (lower is better)
Translates to: CGVVTSATASSCPSTSPNAEKHY*LDNPKP
Trigger: AGGTTTTGGATTATCTAACCAATAGTGCTTCTCTGC...ATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCTGATGTCACCACCCCACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
3UTR CAA 72 bp AGTCTGTGGGGTGGTGACATCAGCAACCGCCAGTTCTaGTCCATCAACAAGCCCCAATTCTTTCAATGTTTT +
Preference number: 4 (lower is better)
Translates to: SLWGGDISNRQF*SINKPQFFQCF
Trigger: AAAACATTGAAAGAATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCTGATGTCACCACCCCACAGACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR TCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAACAGTCTGTGGGGTGGTaGCATCAGCAACCGCCAGTT +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKQSVGW*HQQPPV
Trigger: AACTGGCGGTTGCTGATGTCACCACCCCACAGACTG...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR TCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGCAGTCTGTGGGGTGGTaGCATCAGCAACCGCCAGTT +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMQSVGW*HQQPPV
Trigger: AACTGGCGGTTGCTGATGTCACCACCCCACAGACTG...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR GCA 90 bp GGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTGCATTTGTGGAACTGGAGAGATTCAGTaGTCGGTTCGAAATCAGGGT +
Preference number: 4 (lower is better)
Translates to: GYFKNLSGTHSCNDCICGTGEIQ*SVRNQG
Trigger: ACCCTGATTTCGAACCGAGCACTGAATCTCTCCAGT...TCCACAAATGCAGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000465627.5
CDS-3UTR GCA 90 bp AAAATTAACCTGTGGTGGATAAAGTTCCAGCGTGCATTCGATACAAGCAGTCATCCTTCTCCAAAAGGCTaGTCCTTAGGCCACTGCAAC +
Preference number: 4 (lower is better)
Translates to: KINLWWIKFQRAFDTSSHPSPKG*SLGHCN
Trigger: GTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG...ATGACTGCTTGTATCGAATGCACGCTGGAACTTTATCCACCACAGGTTAATTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp GTGGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTGCATTTGTGGGTGGCTGTGATGGCTaGAGATTTCATTTGCAGAGA +
Preference number: 4 (lower is better)
Translates to: VAILKTSVAHTAAMTAFVGGCDG*RFHLQR
Trigger: TCTCTGCAAATGAAATCTCCAGCCATCACAGCCACC...CACAAATGCAGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCCAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp CCCCAATTCTTTCAATGTTTTGGAGAGATTTGGCCTTGTTCGTTCTTCAATAGAACCATCAACAGCCATTaGCTCCTCGCCATCCGCCAT +
Preference number: 4 (lower is better)
Translates to: PQFFQCFGEIWPCSFFNRTINSH*LLAIRH
Trigger: ATGGCGGATGGCGAGGAGCCAATGGCTGTTGATGGT...TCTATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGACCATCAACAGCCATTaGCTCCTCGCCATCCGCCAT +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMTINSH*LLAIRH
Trigger: ATGGCGGATGGCGAGGAGCCAATGGCTGTTGATGGT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349511.8
ENST00000415609.6
CDS-3UTR GCA 90 bp ATTTTGAGGAAGCTGGCTACAAGCTGGGCAGTTTTCCTTTCTTTCTGCTTCAAATGCTCCTTAGGCCACTaGAACATCCTTACATACTCA +
Preference number: 4 (lower is better)
Translates to: ILRKLATSWAVFLSFCFKCSLGH*NILTYS
Trigger: TGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCA...TTTGAAGCAGAAAGAAAGGAAAACTGCCCAGCTTGTAGCCAGCTTCCTCAAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR GCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGCCTTCTCCAAAAGGCTaGTCCTTAGGCCACTGCAAC +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMPSPKG*SLGHCN
Trigger: GTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR GCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAACCTTCTCCAAAAGGCTaGTCCTTAGGCCACTGCAAC +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKPSPKG*SLGHCN
Trigger: GTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp TGCTCCTTAGGCCACTGCAACATCCTTACATACTCAATACAGTGTTCTGGTAGCAAAATTAACCTGTGGTaGATAAAGTTCCAGCGTGCA +
Preference number: 4 (lower is better)
Translates to: CSLGHCNILTYSIQCSGSKINLW*IKFQRA
Trigger: TGCACGCTGGAACTTTATCCACCACAGGTTAATTTT...GCTACCAGAACACTGTATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR GCA 90 bp AAAATTAACCTGTGGTGGATAAAGTTCCAGCGTGCATTCGATACAAGCAGTCATTGCTCCTTAGGCCACTaGAACATCCTTACATACTCA +
Preference number: 4 (lower is better)
Translates to: KINLWWIKFQRAFDTSSHCSLGH*NILTYS
Trigger: TGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCA...ATGACTGCTTGTATCGAATGCACGCTGGAACTTTATCCACCACAGGTTAATTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR GCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAACAGACAAGGCTTCAGTaGTCGGTTCGAAATCAGGGT +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKQTRLQ*SVRNQG
Trigger: ACCCTGATTTCGAACCGAGCACTGAAGCCTTGTCTG...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415609.6
CDS-3UTR CCA 90 bp TATGCACTTGTGGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTCTATCAAAGGGACAATaGAGCTTGGATCTAAGACAC +
Preference number: 4 (lower is better)
Translates to: YALVAILKTSVAHTAAMTLSKGQ*SLDLRH
Trigger: GTGTCTTAGATCCAAGCTCCATTGTCCCTTTGATAG...AGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCCACAAGTGCATA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp CCCAATTCTTTCAATGTTTTGGAGAGATTTGGCCTTGTTCGTTCTTCAATAGAGGGTGGCTGTGATGGCTaGAGATTTCATTTGCAGAGA +
Preference number: 4 (lower is better)
Translates to: PNSFNVLERFGLVRSSIEGGCDG*RFHLQR
Trigger: TCTCTGCAAATGAAATCTCCAGCCATCACAGCCACC...CTCTATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR GCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGACTGGAGAGATTCAGTaGTCGGTTCGAAATCAGGGT +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMTGEIQ*SVRNQG
Trigger: ACCCTGATTTCGAACCGAGCACTGAATCTCTCCAGT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349511.8
ENST00000361055.9
CDS-3UTR GCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAAGTGGCACACACAGCTaGAATGACTGCATTTGTGGA +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKSGTHS*NDCICG
Trigger: TCCACAAATGCAGTCATTGCAGCTGTGTGTGCCACT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR GCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGAGTGGCACACACAGCTaGAATGACTGCATTTGTGGA +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMSGTHS*NDCICG
Trigger: TCCACAAATGCAGTCATTGCAGCTGTGTGTGCCACT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAAGGAACTTCTTTACATaGTTCCAGCGACCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKRNFFT*FQRPSQ
Trigger: CTGGGAAGGTCGCTGGAACCATGTAAAGAAGTTCCT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGAGGAACTTCTTTACATaGTTCCAGCGACCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMRNFFT*FQRPSQ
Trigger: CTGGGAAGGTCGCTGGAACCATGTAAAGAAGTTCCT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAGGTGGCTGTGATGGCTaGAGATTTCATTTGCAGAGA +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKGGCDG*RFHLQR
Trigger: TCTCTGCAAATGAAATCTCCAGCCATCACAGCCACC...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGGGTGGCTGTGATGGCTaGAGATTTCATTTGCAGAGA +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMGGCDG*RFHLQR
Trigger: TCTCTGCAAATGAAATCTCCAGCCATCACAGCCACC...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp GTGGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTGCATTTGTGTGTTTTGGAGAGATTTaGCCTTGTTCGTTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: VAILKTSVAHTAAMTAFVCFGEI*PCSFFN
Trigger: ATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACA...CACAAATGCAGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCCAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp CCTTCTCCAAAAGGCTGCTCCTTAGGCCACTGCAACATCCTTACATACTCAATAATTCTTTCAATGTTTTaGAGAGATTTGGCCTTGTTC +
Preference number: 4 (lower is better)
Translates to: PSPKGCSLGHCNILTYSIILSMF*RDLALF
Trigger: GAACAAGGCCAAATCTCTCCAAAACATTGAAAGAAT...TATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR TCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGAGCCGCCAGCTCCAATaGCTAGAACTTTACATGTAT +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMSRQLQ*LELYMY
Trigger: ATACATGTAAAGTTCTAGTCATTGGAGCTGGCGGCT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349511.8
ENST00000361055.9
CDS-3UTR TCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAAGCCGCCAGCTCCAATaGCTAGAACTTTACATGTAT +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKSRQLQ*LELYMY
Trigger: ATACATGTAAAGTTCTAGTCATTGGAGCTGGCGGCT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000349511.8
ENST00000361055.9
CDS-3UTR GCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGTGCTCCTTAGGCCACTaGAACATCCTTACATACTCA +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMCSLGH*NILTYS
Trigger: TGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCA...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR GCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAATGCTCCTTAGGCCACTaGAACATCCTTACATACTCA +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKCSLGH*NILTYS
Trigger: TGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCA...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR GCA 90 bp GGGATTTTTGGAAAATCCATTGTATATGTTCAGGATCATCTCCATCTAATGGAAAGTGGCACACACAGCTaGAATGACTGCATTTGTGGA +
Preference number: 4 (lower is better)
Translates to: GIFGKSIVYVQDHLHLMESGTHS*NDCICG
Trigger: TCCACAAATGCAGTCATTGCAGCTGTGTGTGCCACT...TTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAATCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp GGGATTTTTGGAAAATCCATTGTATATGTTCAGGATCATCTCCATCTAATGGAAAGGAACTTCTTTACATaGTTCCAGCGACCTTCCCAG +
Preference number: 4 (lower is better)
Translates to: GIFGKSIVYVQDHLHLMERNFFT*FQRPSQ
Trigger: CTGGGAAGGTCGCTGGAACCATGTAAAGAAGTTCCT...TTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAATCCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp GGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTGCATTTGTGGAATTCTTTCAATGTTTTaGAGAGATTTGGCCTTGTTC +
Preference number: 4 (lower is better)
Translates to: GYFKNLSGTHSCNDCICGILSMF*RDLALF
Trigger: GAACAAGGCCAAATCTCTCCAAAACATTGAAAGAAT...TCCACAAATGCAGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR TCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAACTTTTTACTACCCCTTaGGTGAGCCTATACGTAACA +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKLFTTP*VSLYVT
Trigger: TGTTACGTATAGGCTCACTCAAGGGGTAGTAAAAAG...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR TCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGCTTTTTACTACCCCTTaGGTGAGCCTATACGTAACA +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMLFTTP*VSLYVT
Trigger: TGTTACGTATAGGCTCACTCAAGGGGTAGTAAAAAG...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR GCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGGATAAAGTTCCAGCGTaGATTCGATACAAGCAGTCA +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMDKVPA*IRYKQS
Trigger: TGACTGCTTGTATCGAATGCACGCTGGAACTTTATC...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR GCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAGATAAAGTTCCAGCGTaGATTCGATACAAGCAGTCA +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKDKVPA*IRYKQS
Trigger: TGACTGCTTGTATCGAATGCACGCTGGAACTTTATC...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGGTATCTAACAAGAACTaGAGAGATTCAGTGCTCGGT +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMVSNKN*RDSVLG
Trigger: ACCGAGCACTGAATCTCTCCAGTTCTTGTTAGATAC...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349511.8
ENST00000361055.9
CDS-3UTR CCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAACTATCAAAGGGACAATaGAGCTTGGATCTAAGACAC +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKLSKGQ*SLDLRH
Trigger: GTGTCTTAGATCCAAGCTCCATTGTCCCTTTGATAG...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGCTATCAAAGGGACAATaGAGCTTGGATCTAAGACAC +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMLSKGQ*SLDLRH
Trigger: GTGTCTTAGATCCAAGCTCCATTGTCCCTTTGATAG...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp ATTTTTGGAAAATCCATTGTATATGTTCAGGATCATCTCCATCTAATGGAACCCCTATCAAAGGGACAATaGAGCTTGGATCTAAGACAC +
Preference number: 4 (lower is better)
Translates to: IFGKSIVYVQDHLHLMEPLSKGQ*SLDLRH
Trigger: GTGTCTTAGATCCAAGCTCCATTGTCCCTTTGATAG...GGGTTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGAAAATTAACCTGTGGTaGATAAAGTTCCAGCGTGCA +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMKINLW*IKFQRA
Trigger: TGCACGCTGGAACTTTATCCACCACAGGTTAATTTT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAAAAATTAACCTGTGGTaGATAAAGTTCCAGCGTGCA +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKKINLW*IKFQRA
Trigger: TGCACGCTGGAACTTTATCCACCACAGGTTAATTTT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
38% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp CCCAATTCTTTCAATGTTTTGGAGAGATTTGGCCTTGTTCGTTCTTCAATAGAGGCAGAGAAGCACTATTaGTTAGATAATCCAAAACCT +
Preference number: 4 (lower is better)
Translates to: PNSFNVLERFGLVRSSIEAEKHY*LDNPKP
Trigger: AGGTTTTGGATTATCTAACCAATAGTGCTTCTCTGC...CTCTATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR GCA 90 bp AGCCCCAATTCTTTCAATGTTTTGGAGAGATTTGGCCTTGTTCGTTCTTCAATAATTTGTGGAAGCTACTaGAGGAATGATTCTTTTTAC +
Preference number: 4 (lower is better)
Translates to: SPNSFNVLERFGLVRSSIICGSY*RNDSFY
Trigger: GTAAAAAGAATCATTCCTGCAGTAGCTTCCACAAAT...TATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGGGCT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR GCA 90 bp CCCCAATTCTTTCAATGTTTTGGAGAGATTTGGCCTTGTTCGTTCTTCAATAGAATTTGTGGAAGCTACTaGAGGAATGATTCTTTTTAC +
Preference number: 4 (lower is better)
Translates to: PQFFQCFGEIWPCSFFNRICGSY*RNDSFY
Trigger: GTAAAAAGAATCATTCCTGCAGTAGCTTCCACAAAT...TCTATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACATTGAAAGAATTGGGG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp GATTTTTGGAAAATCCATTGTATATGTTCAGGATCATCTCCATCTAATGGAACCAAAATTAACCTGTGGTaGATAAAGTTCCAGCGTGCA +
Preference number: 4 (lower is better)
Translates to: DFWKIHCICSGSSPSNGTKINLW*IKFQRA
Trigger: TGCACGCTGGAACTTTATCCACCACAGGTTAATTTT...GGTTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAATC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAGCAGAGAAGCACTATTaGTTAGATAATCCAAAACCT +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKAEKHY*LDNPKP
Trigger: AGGTTTTGGATTATCTAACCAATAGTGCTTCTCTGC...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGGCAGAGAAGCACTATTaGTTAGATAATCCAAAACCT +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMAEKHY*LDNPKP
Trigger: AGGTTTTGGATTATCTAACCAATAGTGCTTCTCTGC...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAATGTTTTGGAGAGATTTaGCCTTGTTCGTTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKCFGEI*PCSFFN
Trigger: ATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACA...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGTGTTTTGGAGAGATTTaGCCTTGTTCGTTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMCFGEI*PCSFFN
Trigger: ATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACA...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp CTCTCTAGGGATTTTTGGAAAATCCATTGTATATGTTCAGGATCATCTCCATCTTGTTTTGGAGAGATTTaGCCTTGTTCGTTCTTCAAT +
Preference number: 4 (lower is better)
Translates to: LSRDFWKIHCICSGSSPSCFGEI*PCSFFN
Trigger: ATTGAAGAACGAACAAGGCCAAATCTCTCCAAAACA...AGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAATCCCTAGAGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR GCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAATTTGTGGAAGCTACTaGAGGAATGATTCTTTTTAC +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKICGSY*RNDSFY
Trigger: GTAAAAAGAATCATTCCTGCAGTAGCTTCCACAAAT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR GCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGATTTGTGGAAGCTACTaGAGGAATGATTCTTTTTAC +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMICGSY*RNDSFY
Trigger: GTAAAAAGAATCATTCCTGCAGTAGCTTCCACAAAT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAATTCTTTCAATGTTTTaGAGAGATTTGGCCTTGTTC +
Preference number: 4 (lower is better)
Translates to: LTSTNTKILSSREGYKVKILSMF*RDLALF
Trigger: GAACAAGGCCAAATCTCTCCAAAACATTGAAAGAAT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CCA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGATTCTTTCAATGTTTTaGAGAGATTTGGCCTTGTTC +
Preference number: 4 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMILSMF*RDLALF
Trigger: GAACAAGGCCAAATCTCTCCAAAACATTGAAAGAAT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp TGGGGTGGTGACATCAGCAACCGCCAGTTCTTGTCCATCAACAAGCCCCAATTCTCGCCATCCGCCATATaGTTCTCCGCCTCTTCCCAG +
Preference number: 5 (lower is better)
Translates to: WGGDISNRQFLSINKPQFSPSAI*FSASSQ
Trigger: CTGGGAAGAGGCGGAGAACAATATGGCGGATGGCGA...GAATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCTGATGTCACCACCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CAA 90 bp GCATTCGATACAAGCAGTCATTCCAGGCAGAATCACCCGGGCATTTCCTTTAAACACCATCAACAGCCATaGGCTCCTCGCCATCCGCCA +
Preference number: 5 (lower is better)
Translates to: AFDTSSHSRQNHPGISFKHHQQP*APRHPP
Trigger: TGGCGGATGGCGAGGAGCCAATGGCTGTTGATGGTG...TTTAAAGGAAATGCCCGGGTGATTCTGCCTGGAATGACTGCTTGTATCGAATGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CAA 90 bp GCATTCGATACAAGCAGTCATTCCAGGCAGAATCACCCGGGCATTTCCTTTAAATCGCCATCCGCCATATaGTTCTCCGCCTCTTCCCAG +
Preference number: 5 (lower is better)
Translates to: AFDTSSHSRQNHPGISFKSPSAI*FSASSQ
Trigger: CTGGGAAGAGGCGGAGAACAATATGGCGGATGGCGA...TTTAAAGGAAATGCCCGGGTGATTCTGCCTGGAATGACTGCTTGTATCGAATGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS TCA 90 bp ACAAGAACTGGAGAGATTCAGTGCTCGGTTCGAAATCAGGGTGTGTaGAGGGTCCAGATCGCTCGAGGAACTTCTTTACATGGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: TRTGEIQCSVRNQGV*RVQIARGTSLHGSS
Trigger: GCTGGAACCATGTAAAGAAGTTCCTCGAGCGATCTGGACCCTTCACACACCCTGATTTCGAACCGAGCACTGAATCTCTCCAGTTCTTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000465108.5
ENST00000465627.5
ENST00000466763.5
ENST00000493957.5
ENST00000630585.1
CDS-3UTR CAA 90 bp GTGGTGGATAAAGTTCCAGCGTGCATTCGATACAAGCAGTCATTCCAGGCAGAAAGCAACCGCCAGTTCTaGTCCATCAACAAGCCCCAA +
Preference number: 5 (lower is better)
Translates to: VVDKVPACIRYKQSFQAESNRQF*SINKPQ
Trigger: TTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCT...TTCTGCCTGGAATGACTGCTTGTATCGAATGCACGCTGGAACTTTATCCACCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CAA 90 bp TATGCACTTGTGGCTATTTTAAAAACCTCAGTGGCACACACAGCTGCAATGACTCACCATCAACAGCCATaGGCTCCTCGCCATCCGCCA +
Preference number: 5 (lower is better)
Translates to: YALVAILKTSVAHTAAMTHHQQP*APRHPP
Trigger: TGGCGGATGGCGAGGAGCCAATGGCTGTTGATGGTG...AGTCATTGCAGCTGTGTGTGCCACTGAGGTTTTTAAAATAGCCACAAGTGCATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS TCA 90 bp TCCTGTGTGTTTAAGGTAGATTGCCTTTTCACAGGGTCACTGCTCTaGCAATTTGGGATGGAGGAAGAGGAGTGCACAAGGGTCCTTCCT +
Preference number: 5 (lower is better)
Translates to: SCVFKVDCLFTGSLL*QFGMEEEECTRVLP
Trigger: AGGAAGGACCCTTGTGCACTCCTCTTCCTCCATCCCAAATTGTCAGAGCAGTGACCCTGTGAAAAGGCAATCTACCTTAAACACACAGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000464605.1
CDS TCA 90 bp AATAAACGTTTCTCACTTCAGTGCTCGGTTCGAAATCAGGGTGTGTaGAGGGTCCAGATCGCTCGAGGAACTTCTTTACATGGTTCCAGC +
Preference number: 5 (lower is better)
Translates to: NKRFSLQCSVRNQGV*RVQIARGTSLHGSS
Trigger: GCTGGAACCATGTAAAGAAGTTCCTCGAGCGATCTGGACCCTTCACACACCCTGATTTCGAACCGAGCACTGAAGTGAGAAACGTTTATT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000485424.1
CDS-3UTR CAA 90 bp TGTGGGGTGGTGACATCAGCAACCGCCAGTTCTTGTCCATCAACAAGCCCCAATATGTTTTGGAGAGATTaGGCCTTGTTCGTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: CGVVTSATASSCPSTSPNMFWRD*ALFVLQ
Trigger: TTGAAGAACGAACAAGGCCAAATCTCTCCAAAACAT...ATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCTGATGTCACCACCCCACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS TCA 90 bp GCCAATCTCTCACTAGGGCCTAATACTCCAGCGAGTATTCTCTTCTaGCATCAACTGGAGGAAGAGCTACCGTTCTTTCCTTTCTTCAGA +
Preference number: 5 (lower is better)
Translates to: ANLSLGPNTPASILF*HQLEEELPFFPFFR
Trigger: TCTGAAGAAAGGAAAGAACGGTAGCTCTTCCTCCAGTTGATGTCAGAAGAGAATACTCGCTGGAGTATTAGGCCCTAGTGAGAGATTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000465108.5
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAACACCATCAACAGCCATaGGCTCCTCGCCATCCGCCA +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKHHQQP*APRHPP
Trigger: TGGCGGATGGCGAGGAGCCAATGGCTGTTGATGGTG...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000349511.8
ENST00000415609.6
CDS-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGCACCATCAACAGCCATaGGCTCCTCGCCATCCGCCA +
Preference number: 5 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMHHQQP*APRHPP
Trigger: TGGCGGATGGCGAGGAGCCAATGGCTGTTGATGGTG...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349511.8
ENST00000415609.6
CDS-3UTR CAA 90 bp CCTTCTCCAAAAGGCTGCTCCTTAGGCCACTGCAACATCCTTACATACTCAATAGGCTGGAGATTTCATTaGCAGAGAAGCACTATTGGT +
Preference number: 5 (lower is better)
Translates to: PSPKGCSLGHCNILTYSIGWRFH*QRSTIG
Trigger: ACCAATAGTGCTTCTCTGCAAATGAAATCTCCAGCC...TATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGTCGCCATCCGCCATATaGTTCTCCGCCTCTTCCCAG +
Preference number: 5 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMSPSAI*FSASSQ
Trigger: CTGGGAAGAGGCGGAGAACAATATGGCGGATGGCGA...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000349511.8
ENST00000415609.6
CDS TCA 90 bp AGGCCAGATTTTTCAGGAGCTCACATCCTAAGCCGCCAGCTCCAATaGCTAGAACTTTACATGTATCTAACAAGAACTGGAGAGATTCAG +
Preference number: 5 (lower is better)
Translates to: RPDFSGAHILSRQLQ*LELYMYLTRTGEIQ
Trigger: CTGAATCTCTCCAGTTCTTGTTAGATACATGTAAAGTTCTAGTCATTGGAGCTGGCGGCTTAGGATGTGAGCTCCTGAAAAATCTGGCCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000465108.5
ENST00000465627.5
ENST00000630585.1
CDS-3UTR CAA 90 bp GTGACATCAGCAACCGCCAGTTCTTGTCCATCAACAAGCCCCAATTCTTTCAATAGAAAACTGAATATTTaGAGGAAGCTGGCTACAAGC +
Preference number: 5 (lower is better)
Translates to: VTSATASSCPSTSPNSFNRKLNI*RKLATS
Trigger: GCTTGTAGCCAGCTTCCTCAAAATATTCAGTTTTCT...ATTGAAAGAATTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCTGATGTCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CAA 90 bp CCTTCTCCAAAAGGCTGCTCCTTAGGCCACTGCAACATCCTTACATACTCAATAAGAAAACTGAATATTTaGAGGAAGCTGGCTACAAGC +
Preference number: 5 (lower is better)
Translates to: PSPKGCSLGHCNILTYSIRKLNI*RKLATS
Trigger: GCTTGTAGCCAGCTTCCTCAAAATATTCAGTTTTCT...TATTGAGTATGTAAGGATGTTGCAGTGGCCTAAGGAGCAGCCTTTTGGAGAAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAAGCAACCGCCAGTTCTaGTCCATCAACAAGCCCCAA +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKSNRQF*SINKPQ
Trigger: TTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS TCA 90 bp TTACCAGATTTTTCAGGAGCTCACATCCTAAGCCGCCAGCTCCAATaGCTAGAACTTTACATGTATCTAACAAGAACTGGAGAGATTCAG +
Preference number: 5 (lower is better)
Translates to: LPDFSGAHILSRQLQ*LELYMYLTRTGEIQ
Trigger: CTGAATCTCTCCAGTTCTTGTTAGATACATGTAAAGTTCTAGTCATTGGAGCTGGCGGCTTAGGATGTGAGCTCCTGAAAAATCTGGTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000466763.5
ENST00000493957.5
CDS TCA 90 bp GAGGAAGAGCTACCGTTCTTTCCTTTCTTCAGAGCACAGTTAACCTaGGGATATTCCCAAAAATCACATAAACCTTTGGAAGGAGACTTC +
Preference number: 5 (lower is better)
Translates to: EEELPFFPFFRAQLT*GYSQKSHKPLEGDF
Trigger: GAAGTCTCCTTCCAAAGGTTTATGTGATTTTTGGGAATATCCTCAGGTTAACTGTGCTCTGAAGAAAGGAAAGAACGGTAGCTCTTCCTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000465108.5
CDS-3UTR CAA 90 bp TATGTTCAGGATCATCTCCATCTAATGGAACCCCTTCTCCAAAAGGCTGCTCCTAACTGCCTATTTAGATaGGAAACATCTATAGTGTCC +
Preference number: 5 (lower is better)
Translates to: YVQDHLHLMEPLLQKAAPNCLFR*ETSIVS
Trigger: GGACACTATAGATGTTTCCAATCTAAATAGGCAGTT...AGGAGCAGCCTTTTGGAGAAGGGGTTCCATTAGATGGAGATGATCCTGAACATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000465627.5
CDS-3UTR CAA 90 bp GATTTTTGGAAAATCCATTGTATATGTTCAGGATCATCTCCATCTAATGGAACCAGCAACCGCCAGTTCTaGTCCATCAACAAGCCCCAA +
Preference number: 5 (lower is better)
Translates to: DFWKIHCICSGSSPSNGTSNRQF*SINKPQ
Trigger: TTGGGGCTTGTTGATGGACAAGAACTGGCGGTTGCT...GGTTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGAAGGGACAATGGAGCTaGGATCTAAGACACCATCTT +
Preference number: 5 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMKGQWS*DLRHHL
Trigger: AAGATGGTGTCTTAGATCCAAGCTCCATTGTCCCTT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAAAGGGACAATGGAGCTaGGATCTAAGACACCATCTT +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKKGQWS*DLRHHL
Trigger: AAGATGGTGTCTTAGATCCAAGCTCCATTGTCCCTT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAGGCTGGAGATTTCATTaGCAGAGAAGCACTATTGGT +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKGWRFH*QRSTIG
Trigger: ACCAATAGTGCTTCTCTGCAAATGAAATCTCCAGCC...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAATCTTTTTACTACCCCTaGAGTGAGCCTATACGTAAC +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKSFYYP*SEPIRN
Trigger: GTTACGTATAGGCTCACTCAAGGGGTAGTAAAAAGA...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGTCTTTTTACTACCCCTaGAGTGAGCCTATACGTAAC +
Preference number: 5 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMSFYYP*SEPIRN
Trigger: GTTACGTATAGGCTCACTCAAGGGGTAGTAAAAAGA...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS TCA 90 bp TGCCTATTTAGATTGGAAACATCTATAGTGTCCATATCTATAACATaGATCTGTCTAAAACCAGACAAGGCTTCAGTGCTCGGTTCGAAA +
Preference number: 5 (lower is better)
Translates to: CLFRLETSIVSISIT*ICLKPDKASVLGSK
Trigger: TTTCGAACCGAGCACTGAAGCCTTGTCTGGTTTTAGACAGATTCATGTTATAGATATGGACACTATAGATGTTTCCAATCTAAATAGGCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415609.6
CDS-3UTR CAA 90 bp ATTTTTGGAAAATCCATTGTATATGTTCAGGATCATCTCCATCTAATGGAACCCTCTTTTTACTACCCCTaGAGTGAGCCTATACGTAAC +
Preference number: 5 (lower is better)
Translates to: IFGKSIVYVQDHLHLMEPSFYYP*SEPIRN
Trigger: GTTACGTATAGGCTCACTCAAGGGGTAGTAAAAAGA...GGGTTCCATTAGATGGAGATGATCCTGAACATATACAATGGATTTTCCAAAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000461934.5
ENST00000465627.5
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAAGAAAACTGAATATTTaGAGGAAGCTGGCTACAAGC +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKRKLNI*RKLATS
Trigger: GCTTGTAGCCAGCTTCCTCAAAATATTCAGTTTTCT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGAGAAAACTGAATATTTaGAGGAAGCTGGCTACAAGC +
Preference number: 5 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMRKLNI*RKLATS
Trigger: GCTTGTAGCCAGCTTCCTCAAAATATTCAGTTTTCT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAATGTTTTGGAGAGATTaGGCCTTGTTCGTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKMFWRD*ALFVLQ
Trigger: TTGAAGAACGAACAAGGCCAAATCTCTCCAAAACAT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGATGTTTTGGAGAGATTaGGCCTTGTTCGTTCTTCAA +
Preference number: 5 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMMFWRD*ALFVLQ
Trigger: TTGAAGAACGAACAAGGCCAAATCTCTCCAAAACAT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAATTCACACAAAAGAGGTaGTATGCTTCCTCCTCTAAA +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKFTQKR*YASSSK
Trigger: TTTAGAGGAGGAAGCATACAACCTCTTTTGTGTGAA...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGTTCACACAAAAGAGGTaGTATGCTTCCTCCTCTAAA +
Preference number: 5 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMFTQKR*YASSSK
Trigger: TTTAGAGGAGGAAGCATACAACCTCTTTTGTGTGAA...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS TCA 90 bp TGCCTATTTAGATTGGAAACATCTATAGTGTCCATATCTATAACATaGATCTGTCTAAAACCAGACAAGGCCAGATTTTTCAGGAGCTCA +
Preference number: 5 (lower is better)
Translates to: CLFRLETSIVSISIT*ICLKPDKARFFRSS
Trigger: TGAGCTCCTGAAAAATCTGGCCTTGTCTGGTTTTAGACAGATTCATGTTATAGATATGGACACTATAGATGTTTCCAATCTAAATAGGCA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000465108.5
ENST00000465627.5
ENST00000630585.1
CDS-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGAACTGCCTATTTAGATaGGAAACATCTATAGTGTCC +
Preference number: 5 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMNCLFR*ETSIVS
Trigger: GGACACTATAGATGTTTCCAATCTAAATAGGCAGTT...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAAAATGTGGAACTACATaGCAATTAGGAACTCTGTCA +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKKCGTT*QLGTLS
Trigger: TGACAGAGTTCCTAATTGCAATGTAGTTCCACATTT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAAAAAGAAGCAATACATTaGCTCATAATCTCTCTCTCC +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKKEAIH*LIISLS
Trigger: GGAGAGAGAGATTATGAGCAAATGTATTGCTTCTTT...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp CTTACAAGCACCAACACCAAAATTCTGTCTTCAAGGGAAGGTTACAAAGTTAAATTAAAGGGACACCTTTaGTGTATTTGGGTACTCAAA +
Preference number: 5 (lower is better)
Translates to: LTSTNTKILSSREGYKVKLKGHL*CIWVLK
Trigger: TTTGAGTACCCAAATACACAAAAGGTGTCCCTTTAA...TTTAACTTTGTAACCTTCCCTTGAAGACAGAATTTTGGTGTTGGTGCTTGTAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS-3UTR CAA 90 bp GCATTAGTTAATATTGTGCATATTGGCCTCTATGGCACTACAAGTAAACAGATGTTAATATTGTGCATATaGGCCTCTATGGCACTACAA +
Preference number: 5 (lower is better)
Translates to: ALVNIVHIGLYGTTSKQMLILCI*ASMALQ
Trigger: TTGTAGTGCCATAGAGGCCAATATGCACAATATTAA...CATCTGTTTACTTGTAGTGCCATAGAGGCCAATATGCACAATATTAACTAATGC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
CDS CAA 90 bp CCACACCCACCATCAACAGCCATTGGCTCCTCGCCATCCGCCATATaGTTCTCCGCCTCTTCCCAGGTGCCCACGCGCGGCAGGGCGGGG +
Preference number: 6 (lower is better)
Translates to: PHPPSTAIGSSPSAI*FSASSQVPTRGRAG
Trigger: CCCCGCCCTGCCGCGCGTGGGCACCTGGGAAGAGGCGGAGAACAATATGGCGGATGGCGAGGAGCCAATGGCTGTTGATGGTGGGTGTGG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000349511.8
CDS CAA 72 bp CCATCAACAGCCATTGGCTCCTCGCCATCCGCCATATaGTTCTCCGCCTCTTCCCAGGTGCCCACGCGCGGC +
Preference number: 6 (lower is better)
Translates to: PSTAIGSSPSAI*FSASSQVPTRG
Trigger: GCCGCGCGTGGGCACCTGGGAAGAGGCGGAGAACAATATGGCGGATGGCGAGGAGCCAATGGCTGTTGATGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000349511.8
CDS CCA 72 bp GTGAAGGGTCCAGATCGCTCGAGGAACTTCTTTACATaGTTCCAGCGACCTTCCCAGTCTCCAGTGTCCCCA +
Preference number: 6 (lower is better)
Translates to: VKGPDRSRNFFT*FQRPSQSPVSP
Trigger: TGGGGACACTGGAGACTGGGAAGGTCGCTGGAACCATGTAAAGAAGTTCCTCGAGCGATCTGGACCCTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 10 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000415609.6
ENST00000461934.5
ENST00000465108.5
ENST00000465627.5
ENST00000466763.5
ENST00000485424.1
ENST00000493957.5
ENST00000630585.1
CDS CCA 72 bp GCCTTTTCACAGGGTCACTGCTCTGACAATTTGGGATaGAGGAAGAGGAGTGCACAAGGGTCCTTCCTCAAG +
Preference number: 6 (lower is better)
Translates to: AFSQGHCSDNLG*RKRSAQGSFLK
Trigger: CTTGAGGAAGGACCCTTGTGCACTCCTCTTCCTCCATCCCAAATTGTCAGAGCAGTGACCCTGTGAAAAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000464605.1
CDS TCA 72 bp TCACTAGGGCCTAATACTCCAGCGAGTATTCTCTTCTaGCATCAACTGGAGGAAGAGCTACCGTTCTTTCCT +
Preference number: 6 (lower is better)
Translates to: SLGPNTPASILF*HQLEEELPFFP
Trigger: AGGAAAGAACGGTAGCTCTTCCTCCAGTTGATGTCAGAAGAGAATACTCGCTGGAGTATTAGGCCCTAGTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000465108.5
CDS TCA 72 bp TTTTCAGGAGCTCACATCCTAAGCCGCCAGCTCCAATaGCTAGAACTTTACATGTATCTAACAAGAACTGGA +
Preference number: 6 (lower is better)
Translates to: FSGAHILSRQLQ*LELYMYLTRTG
Trigger: TCCAGTTCTTGTTAGATACATGTAAAGTTCTAGTCATTGGAGCTGGCGGCTTAGGATGTGAGCTCCTGAAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000465108.5
ENST00000465627.5
ENST00000466763.5
ENST00000493957.5
ENST00000630585.1
CDS TCA 72 bp ATGGTACTGTCTAAACTCACTTATCGATTATTCTCCTaGAAGCATCCCAGCCCTAAGTCATCCCAACATCAT +
Preference number: 6 (lower is better)
Translates to: MVLSKLTYRLFS*KHPSPKSSQHH
Trigger: ATGATGTTGGGATGACTTAGGGCTGGGATGCTTTCAGGAGAATAATCGATAAGTGAGTTTAGACAGTACCAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000461522.1
CDS TCA 72 bp CTACCGTTCTTTCCTTTCTTCAGAGCACAGTTAACCTaGGGATATTCCCAAAAATCACATAAACCTTTGGAA +
Preference number: 6 (lower is better)
Translates to: LPFFPFFRAQLT*GYSQKSHKPLE
Trigger: TTCCAAAGGTTTATGTGATTTTTGGGAATATCCTCAGGTTAACTGTGCTCTGAAGAAAGGAAAGAACGGTAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000465108.5
CDS TCA 72 bp AGATTGGAAACATCTATAGTGTCCATATCTATAACATaGATCTGTCTAAAACCAGACAAGGCTTCAGTGCTC +
Preference number: 6 (lower is better)
Translates to: RLETSIVSISIT*ICLKPDKASVL
Trigger: GAGCACTGAAGCCTTGTCTGGTTTTAGACAGATTCATGTTATAGATATGGACACTATAGATGTTTCCAATCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000415609.6
CDS TCA 72 bp AGATTGGAAACATCTATAGTGTCCATATCTATAACATaGATCTGTCTAAAACCAGACAAGGCCAGATTTTTC +
Preference number: 6 (lower is better)
Translates to: RLETSIVSISIT*ICLKPDKARFF
Trigger: GAAAAATCTGGCCTTGTCTGGTTTTAGACAGATTCATGTTATAGATATGGACACTATAGATGTTTCCAATCT
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000349511.8
ENST00000361055.9
ENST00000465108.5
ENST00000465627.5
ENST00000630585.1
CDS CCA 72 bp AGTATGAATTACATGGTACCTTTACTGAACTTCAAGTaGATGGTACTGTCTAAACTCACTTATCGATTATTC +
Preference number: 6 (lower is better)
Translates to: SMNYMVPLLNFK*MVLSKLTYRLF
Trigger: GAATAATCGATAAGTGAGTTTAGACAGTACCATCCACTTGAAGTTCAGTAAAGGTACCATGTAATTCATACT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000461522.1