Pregenerated sensors for U6 (Homo sapiens)
Ensembl gene IDs: ENSG00000252379, ENSG00000262579, ENSG00000263367, ENSG00000266231, ENSG00000273501, ENSG00000274323, ENSG00000276138, ENSG00000276183, ENSG00000277139, ENSG00000277419, ENSG00000278101, ENSG00000278188, ENSG00000278747, ENSG00000278793, ENSG00000283136, ENSG00000283337, ENSG00000283502Ensembl transcript IDs: ENST00000516570.2, ENST00000572460.1, ENST00000577293.1, ENST00000578738.1, ENST00000579440.1, ENST00000579598.1, ENST00000579614.1, ENST00000581785.1, ENST00000581939.1, ENST00000582932.1, ENST00000583133.1, ENST00000584333.1, ENST00000584993.1, ENST00000585053.1, ENST00000610695.1, ENST00000611790.1, ENST00000612506.1, ENST00000612508.1, ENST00000612550.1, ENST00000613107.1, ENST00000613955.1, ENST00000614007.1, ENST00000614682.1, ENST00000615356.1, ENST00000615686.1, ENST00000616468.1, ENST00000617976.1, ENST00000619359.1, ENST00000620287.1, ENST00000621236.1, ENST00000622869.1, ENST00000636230.1, ENST00000636464.1, ENST00000636749.1, ENST00000672529.1
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | TATGGAACACTTCACGAATTTGTATGTCATCTTGCGCAGGGGCCATaGAAATCTTCTCTATCATTCCAACTATATGTGCTGCCGAAGCGA | + |
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Preference number: 5 (lower is better) Translates to: YGTLHEFVCHLAQGP*KSSLSFQLYVLPKR Trigger: TCGCTTCGGCAGCACATATAGTTGGAATGATAGAGAAGATTTGCATGGCCCCTGCGCAAGATGACATACAAATTCGTGAAGTGTTCCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636230.1 |
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| CDS TCA 90 bp | CAACACTTCACAAATCTGTGTGTCATCCTCGTGCAGGGACCATGCTaGTCTTCTCGAAGTTGTTTCAATTTTACTATATGTACAGCTGAT | + |
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Preference number: 5 (lower is better) Translates to: QHFTNLCVILVQGPC*SSRSCFNFTICTAD Trigger: ATCAGCTGTACATATAGTAAAATTGAAACAACTTCGAGAAGATCAGCATGGTCCCTGCACGAGGATGACACACAGATTTGTGAAGTGTTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621236.1 |
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| CDS TCA 90 bp | CAACACCTTACAGATTTCTATGTCATCCTTGTGCGGGGACCATGCTaGTCTTCTCAACGTTGTCTTAATTTTACTATATGTACCACTGAA | + |
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Preference number: 5 (lower is better) Translates to: QHLTDFYVILVRGPC*SSQRCLNFTICTTE Trigger: TTCAGTGGTACATATAGTAAAATTAAGACAACGTTGAGAAGATCAGCATGGTCCCCGCACAAGGATGACATAGAAATCTGTAAGGTGTTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000615686.1 |
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| CDS GCA 72 bp | CCCAATATGGAACGCTTCTTGAATTTGTGTCATCCGTaGCCAGTGGCCGTGCTAATCCCTGTAACCTTCGAA | + |
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Preference number: 6 (lower is better) Translates to: PNMERFLNLCHP*PVAVLIPVTFE Trigger: TTCGAAGGTTACAGGGATTAGCACGGCCACTGGGCACGGATGACACAAATTCAAGAAGCGTTCCATATTGGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENST00000578738.1 ENST00000579440.1 ENST00000579614.1 ENST00000581939.1 ENST00000583133.1 ENST00000584993.1 |
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| CDS GCA 72 bp | AGATGGAACACCTCCCCAATTTGCATGCCATCCTTATaGAGGGACCATGCTAACCTCTGTATTGTTCCAATT | + |
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Preference number: 6 (lower is better) Translates to: RWNTSPICMPSL*RDHANLCIVPI Trigger: AATTGGAACAATACAGAGGTTAGCATGGTCCCTGCATAAGGATGGCATGCAAATTGGGGAGGTGTTCCATCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000516570.2 |
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| CDS GCA 72 bp | AAATATGGAACGCTTCACGAATTTGCGTGTCATCCTTaGTCAGGGGCCACGTTAATCTTCTCTGTATCGTTC | + |
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Preference number: 6 (lower is better) Translates to: KYGTLHEFACHP*SGATLIFSVSF Trigger: GAACGATACAGAGAAGATTAACGTGGCCCCTGAGCAAGGATGACACGCAAATTCGTGAAGCGTTCCATATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000572460.1 |
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| CDS GCA 72 bp | AAATATGGAACGCTTCACGAATTTGCGTGTCATCCTTaGTCAGGGGCCATGCTAATCTTCTCTGTATCGTTC | + |
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Preference number: 6 (lower is better) Translates to: KYGTLHEFACHP*SGAMLIFSVSF Trigger: GAACGATACAGAGAAGATTAGCATGGCCCCTGAGCAAGGATGACACGCAAATTCGTGAAGCGTTCCATATTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000612508.1 ENST00000615356.1 |
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| CDS CAA 72 bp | AAAATATGGAACGCTTCACGAATTTGCGTGTCATCCTaGCTCAGGGGCCACGTTAATCTTCTCTGTATCGTT | + |
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Preference number: 6 (lower is better) Translates to: KIWNASRICVSS*LRGHVNLLCIV Trigger: AACGATACAGAGAAGATTAACGTGGCCCCTGAGCAAGGATGACACGCAAATTCGTGAAGCGTTCCATATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000572460.1 |
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| CDS CAA 72 bp | AAAATATGGAACGCTTCACGAATTTGCGTGTCATCCTaGCTCAGGGGCCATGCTAATCTTCTCTGTATCGTT | + |
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Preference number: 6 (lower is better) Translates to: KIWNASRICVSS*LRGHANLLCIV Trigger: AACGATACAGAGAAGATTAGCATGGCCCCTGAGCAAGGATGACACGCAAATTCGTGAAGCGTTCCATATTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000612508.1 ENST00000615356.1 |
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| CDS GCA 72 bp | ATATGGAATGCCTCAAAGAGTTGTGCTGCCTCCTTATaGAGAAGCCATGCTAACTTTCTCTGTATTGTTCCA | + |
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Preference number: 6 (lower is better) Translates to: IWNASKSCAASL*RSHANFLCIVP Trigger: TGGAACAATACAGAGAAAGTTAGCATGGCTTCTGCATAAGGAGGCAGCACAACTCTTTGAGGCATTCCATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000616468.1 |
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| CDS GCA 72 bp | CTTCACGAATTTGTATGTCATCTTGCGCAGGGGCCATaGAAATCTTCTCTATCATTCCAACTATATGTGCTG | + |
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Preference number: 6 (lower is better) Translates to: LHEFVCHLAQGP*KSSLSFQLYVL Trigger: CAGCACATATAGTTGGAATGATAGAGAAGATTTGCATGGCCCCTGCGCAAGATGACATACAAATTCGTGAAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636230.1 |
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| CDS GCA 72 bp | ATACAGTATGCTTCACGAATTTGCATTTCATCCCTGTaGAGGGGTCATTCCAATTTTGGTATATGTGCTACC | + |
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Preference number: 6 (lower is better) Translates to: IQYASRICISSL*RGHSNFGICAT Trigger: GGTAGCACATATACCAAAATTGGAATGACCCCTGCACAGGGATGAAATGCAAATTCGTGAAGCATACTGTAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000636749.1 |
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| CDS CAA 72 bp | TTTAAATGGAACCCTTCACAAATTTGTGTGTCATCCTaGAGCAGGGGCCATGCTAATCTTCTCTGTATCAGA | + |
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Preference number: 6 (lower is better) Translates to: FKWNPSQICVSS*SRGHANLLCIR Trigger: TCTGATACAGAGAAGATTAGCATGGCCCCTGCTCAAGGATGACACACAAATTTGTGAAGGGTTCCATTTAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 6 transcripts: ENST00000577293.1 ENST00000579598.1 ENST00000581785.1 ENST00000582932.1 ENST00000584333.1 ENST00000585053.1 |
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| CDS CAA 72 bp | GAAATATGCAACACTTTACAGATTTCTATGTCATCCTaGTGTGGGGACCGTGCTGATCTTCTCAACGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: EICNTLQISMSS*CGDRADLLNVV Trigger: AACAACGTTGAGAAGATCAGCACGGTCCCCACACAAGGATGACATAGAAATCTGTAAAGTGTTGCATATTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000613107.1 |
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| CDS TCA 72 bp | ACAAATCTGTGTGTCATCCTCGTGCAGGGACCATGCTaGTCTTCTCGAAGTTGTTTCAATTTTACTATATGT | + |
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Preference number: 6 (lower is better) Translates to: TNLCVILVQGPC*SSRSCFNFTIC Trigger: ACATATAGTAAAATTGAAACAACTTCGAGAAGATCAGCATGGTCCCTGCACGAGGATGACACACAGATTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000621236.1 |
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| CDS CAA 72 bp | AGAAATATGCAACACTTTACAGATTCTATGTCATCCTaGTGTGGGGACCATGCTGATCTTCTCAACGTTGTT | + |
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Preference number: 6 (lower is better) Translates to: RNMQHFTDSMSS*CGDHADLLNVV Trigger: AACAACGTTGAGAAGATCAGCATGGTCCCCACACAAGGATGACATAGAATCTGTAAAGTGTTGCATATTTCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000612550.1 ENST00000672529.1 |
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| CDS GCA 72 bp | TTCACAAATTTGCATGTCATTCTTTCACAGAGGCCGTaGCAATCTCTCTATTGTTCCAACTTAAGTATGTGT | + |
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Preference number: 6 (lower is better) Translates to: FTNLHVILSQRP*QSLYCSNLSMC Trigger: ACACATACTTAAGTTGGAACAATAGAGAGATTGGCACGGCCTCTGTGAAAGAATGACATGCAAATTTGTGAA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000612506.1 ENST00000613955.1 ENST00000614007.1 ENST00000620287.1 |
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| CDS GCA 72 bp | AAAAATGGAATGTTTCATGAATTTGGGTGCTGTTCTTaGCCAAAGGCCATGCTAATCTTTCCTGTATTGTTC | + |
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Preference number: 6 (lower is better) Translates to: KNGMFHEFGCCS*PKAMLIFPVLF Trigger: GAACAATACAGGAAAGATTAGCATGGCCTTTGGGCAAGAACAGCACCCAAATTCATGAAACATTCCATTTTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000614682.1 |
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| CDS TCA 72 bp | ACAAATTTGTGTGTCACCCATGTGCAGGGATCATGCTaGTCTTCTCTATATTGTTTCAATTTTAGTGGATGT | + |
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Preference number: 6 (lower is better) Translates to: TNLCVTHVQGSC*SSLYCFNFSGC Trigger: ACATCCACTAAAATTGAAACAATATAGAGAAGATCAGCATGATCCCTGCACATGGGTGACACACAAATTTGT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000622869.1 |
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| CDS TCA 72 bp | AAATATGGAACACATCACAAATTTGTGTGTCATCCTTaGGCAGCTGTATCATTCCAATTTCAATGTATGTGC | + |
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Preference number: 6 (lower is better) Translates to: KYGTHHKFVCHP*AAVSFQFQCMC Trigger: GCACATACATTGAAATTGGAATGATACAGCTGCTCAAGGATGACACACAAATTTGTGATGTGTTCCATATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000636464.1 |
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| CDS TCA 72 bp | ATGAAATTTGTTAATATCCTTGTGCAGCTGCCATGCTaGTCTTCTCTGTATCATTCTGATTTTGGTATATGT | + |
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Preference number: 6 (lower is better) Translates to: MKFVNILVQLPC*SSLYHSDFGIC Trigger: ACATATACCAAAATCAGAATGATACAGAGAAGATCAGCATGGCAGCTGCACAAGGATATTAACAAATTTCAT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000610695.1 ENST00000611790.1 ENST00000617976.1 ENST00000619359.1 |
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| CDS CAA 72 bp | AAAATATGGAACACATCACAAATTTGTGTGTCATCCTaGAGCAGCTGTATCATTCCAATTTCAATGTATGTG | + |
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Preference number: 6 (lower is better) Translates to: KIWNTSQICVSS*SSCIIPISMYV Trigger: CACATACATTGAAATTGGAATGATACAGCTGCTCAAGGATGACACACAAATTTGTGATGTGTTCCATATTTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000636464.1 |
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