Pregenerated sensors for U2AF1 (Homo sapiens)
Ensembl gene IDs: ENSG00000160201Ensembl transcript IDs: ENST00000291552.9, ENST00000380276.6, ENST00000459639.5, ENST00000464750.5, ENST00000486519.5
Found 10 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | GTCACGCTCCCGTCCGCCGCCACCTCCACCACCGCCACCGCCACCGCCACGACCCGGGATCTTGATCTATaGTTCTTGCGACGGCGGCCA | + |
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Preference number: 2 (lower is better) Translates to: VTLPSAATSTTATATATTRDLDL*FLRRRP Trigger: TGGCCGCCGTCGCAAGAAGCATAGATCAAGATCCCG...GGTCGTGGCGGTGGCGGTGGCGGTGGTGGAGGTGGCGGCGGACGGGAGCGTGAC 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464750.5 |
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| 3UTR-3UTR TCA 90 bp | ATCTCTCGACCGCCTCCTGTCACGCTCCCGTCCGCCGCCACCTCCACCACCGCCCCTCACGGCGAAACTTaGCGTACACGTTCCCCACCA | + |
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Preference number: 2 (lower is better) Translates to: ISRPPPVTLPSAATSTTAPHGET*RTRSPP Trigger: TGGTGGGGAACGTGTACGTCAAGTTTCGCCGTGAGG...GGCGGTGGTGGAGGTGGCGGCGGACGGGAGCGTGACAGGAGGCGGTCGAGAGAT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464750.5 |
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| CDS-3UTR TCA 90 bp | GTCACGCTCCCGTCCGCCGCCACCTCCACCACCGCCACCGCCACCGCCACGACCAGGGCAATGGTAGTGTaGGCCGTCAGCCGTCTGTGC | + |
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Preference number: 4 (lower is better) Translates to: VTLPSAATSTTATATATTRAMVV*AVSRLC Trigger: GCACAGACGGCTGACGGCTCACACTACCATTGCCCT...GGTCGTGGCGGTGGCGGTGGCGGTGGTGGAGGTGGCGGCGGACGGGAGCGTGAC 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464750.5 |
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| CDS-3UTR TCA 90 bp | GTCACGCTCCCGTCCGCCGCCACCTCCACCACCGCCACCGCCACCGCCACGACCCCTCACGGCGAAACTTaGCGTACACGTTCCCCACCA | + |
|
Preference number: 4 (lower is better) Translates to: VTLPSAATSTTATATATTPHGET*RTRSPP Trigger: TGGTGGGGAACGTGTACGTCAAGTTTCGCCGTGAGG...GGTCGTGGCGGTGGCGGTGGCGGTGGTGGAGGTGGCGGCGGACGGGAGCGTGAC 70% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464750.5 |
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| CDS-3UTR CAA 90 bp | ATCTCTCGACCGCCTCCTGTCACGCTCCCGTCCGCCGCCACCTCCACCACCGCCAATGAACAGTTGACTTaGTCTTTCTCGGTGCCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: ISRPPPVTLPSAATSTTANEQLT*SFSVPK Trigger: CTTCGGCACCGAGAAAGACAAAGTCAACTGTTCATT...GGCGGTGGTGGAGGTGGCGGCGGACGGGAGCGTGACAGGAGGCGGTCGAGAGAT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000464750.5 |
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| CDS CCA 90 bp | ACCGGTGTGGTGAGGGTTAAGATCCCAACTCTGCTACCAGCTGCTTaGGCTTGGGCAAGTCACCCTAGCTCTCAGATGTCATCTGTAAAT | + |
|
Preference number: 5 (lower is better) Translates to: TGVVRVKIPTLLPAA*AWASHPSSQMSSVN Trigger: ATTTACAGATGACATCTGAGAGCTAGGGTGACTTGCCCAAGCCCAAGCAGCTGGTAGCAGAGTTGGGATCTTAACCCTCACCACACCGGT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000459639.5 |
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| CDS CCA 90 bp | GTGGTGAGGGTTAAGATCCCAACTCTGCTACCAGCTGCTTGGGCTTaGGCAAGTCACCCTAGCTCTCAGATGTCATCTGTAAATGATGAC | + |
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Preference number: 5 (lower is better) Translates to: VVRVKIPTLLPAAWA*ASHPSSQMSSVNDD Trigger: GTCATCATTTACAGATGACATCTGAGAGCTAGGGTGACTTGCCCAAGCCCAAGCAGCTGGTAGCAGAGTTGGGATCTTAACCCTCACCAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000459639.5 |
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| CDS TCA 90 bp | CAGATGTCATCTGTAAATGATGACAATGCCAATGTGGCACTGTTCTaGGAGTCAGACAGAACGTATGTGTGCTTCACATATGGTGCTCAT | + |
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Preference number: 5 (lower is better) Translates to: QMSSVNDDNANVALF*ESDRTYVCFTYGAH Trigger: ATGAGCACCATATGTGAAGCACACATACGTTCTGTCTGACTCTCAGAACAGTGCCACATTGGCATTGTCATCATTTACAGATGACATCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000459639.5 |
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| CDS GCA 72 bp | CCATTTCCCACCCGCCGCCGCCGCTGCCGTCGACACTaGTGCCGACGCCGCCGACCCTGCCGACGCCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: PFPTRRRRCRRH*CRRRRPCRRPR Trigger: CCGAGGGCGTCGGCAGGGTCGGCGGCGTCGGCAGCAGTGTCGACGGCAGCGGCGGCGGCGGGTGGGAAATGG 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000291552.9 ENST00000380276.6 ENST00000486519.5 |
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| CDS CCA 72 bp | GTGAGGGTTAAGATCCCAACTCTGCTACCAGCTGCTTaGGCTTGGGCAAGTCACCCTAGCTCTCAGATGTCA | + |
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Preference number: 6 (lower is better) Translates to: VRVKIPTLLPAA*AWASHPSSQMS Trigger: TGACATCTGAGAGCTAGGGTGACTTGCCCAAGCCCAAGCAGCTGGTAGCAGAGTTGGGATCTTAACCCTCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000459639.5 |
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