Pregenerated sensors for U2 (Homo sapiens)
Ensembl gene IDs: ENSG00000274452, ENSG00000277903Ensembl transcript IDs: ENST00000611544.1, ENST00000613119.1, ENST00000613778.1, ENST00000613956.1, ENST00000615427.1, ENST00000616345.1, ENST00000616535.1, ENST00000617785.1, ENST00000618602.1, ENST00000619225.1, ENST00000619465.1, ENST00000620268.1
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGGGGTGCACCGTTCCTGGAAGTACTGCAATACCAGGTCGATGCGTaGAGTGGACGGAGCAAGCTCCTATTCCATCTCCCTGCTCCAAAA | + |
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Preference number: 5 (lower is better) Translates to: GGAPFLEVLQYQVDA*SGRSKLLFHLPAPK Trigger: TTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCCGTCCACTCCACGCATCGACCTGGTATTGCAGTACTTCCAGGAACGGTGCACCCCC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000619225.1 |
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| CDS CCA 90 bp | TGCACCGTTCCTGGAAGTACTGCAATACCAGGTCGATGCGTGGAGTaGACGGAGCAAGCTCCTATTCCATCTCCCTGCTCCAAAAATCCA | + |
|
Preference number: 5 (lower is better) Translates to: CTVPGSTAIPGRCVE*TEQAPIPSPCSKNP Trigger: TGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCCGTCCACTCCACGCATCGACCTGGTATTGCAGTACTTCCAGGAACGGTGCA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000619225.1 |
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| CDS CCA 72 bp | CCTGGAAGTACTGCAATACCAGGTCGATGCGTGGAGTaGACGGAGCAAGCTCCTATTCCATCTCCCTGCTCC | + |
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Preference number: 6 (lower is better) Translates to: PGSTAIPGRCVE*TEQAPIPSPCS Trigger: GGAGCAGGGAGATGGAATAGGAGCTTGCTCCGTCCACTCCACGCATCGACCTGGTATTGCAGTACTTCCAGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619225.1 |
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| CDS GCA 72 bp | TGCACCGTTCCTGGAGGTACTGCAATACCAGGTCGATaGGTGGAGTGGACGGAGCAAGCTCCTATTCCATCT | + |
|
Preference number: 6 (lower is better) Translates to: CTVPGGTAIPGR*VEWTEQAPIPS Trigger: AGATGGAATAGGAGCTTGCTCCGTCCACTCCACGCATCGACCTGGTATTGCAGTACCTCCAGGAACGGTGCA 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 11 transcripts: ENST00000611544.1 ENST00000613119.1 ENST00000613778.1 ENST00000613956.1 ENST00000615427.1 ENST00000616345.1 ENST00000616535.1 ENST00000617785.1 ENST00000618602.1 ENST00000619465.1 ENST00000620268.1 |
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| CDS GCA 72 bp | TGCACCGTTCCTGGAAGTACTGCAATACCAGGTCGATaGGTGGAGTGGACGGAGCAAGCTCCTATTCCATCT | + |
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Preference number: 6 (lower is better) Translates to: CTVPGSTAIPGR*VEWTEQAPIPS Trigger: AGATGGAATAGGAGCTTGCTCCGTCCACTCCACGCATCGACCTGGTATTGCAGTACTTCCAGGAACGGTGCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000619225.1 |
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| CDS GCA 72 bp | GTGGAGTGGACGGAGCAAGCTCCTATTCCATCTCCCTaGTCCAAAAATCCATTTAATATATTGTCCTCGGAT | + |
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Preference number: 6 (lower is better) Translates to: VEWTEQAPIPSP*SKNPFNILSSD Trigger: ATCCGAGGACAATATATTAAATGGATTTTTGGAGCAGGGAGATGGAATAGGAGCTTGCTCCGTCCACTCCAC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 12 transcripts: ENST00000611544.1 ENST00000613119.1 ENST00000613778.1 ENST00000613956.1 ENST00000615427.1 ENST00000616345.1 ENST00000616535.1 ENST00000617785.1 ENST00000618602.1 ENST00000619225.1 ENST00000619465.1 ENST00000620268.1 |
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