Pregenerated sensors for TUBB2A (Homo sapiens)
Ensembl gene IDs: ENSG00000137267Ensembl transcript IDs: ENST00000333628.4, ENST00000489942.1, ENST00000679400.1, ENST00000679907.1, ENST00000680036.1, ENST00000680967.1
Found 13 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR GCA 90 bp | ACAGACAATACTGTAATTTTTAGAGGAGTTCCACATCATTACATCAACAGTGTGCAAGTAGAAAGACCATaGTTGAGGACAACAGAAGTT | + |
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Preference number: 2 (lower is better) Translates to: TDNTVIFRGVPHHYINSVQVERP*LRTTEV Trigger: AACTTCTGTTGTCCTCAAGCATGGTCTTTCTACTTG...CACACTGTTGATGTAATGATGTGGAACTCCTCTAAAAATTACAGTATTGTCTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333628.4 |
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| 3UTR-3UTR CAA 90 bp | ACAGACAATACTGTAATTTTTAGAGGAGTTCCACATCATTACATCAACAGTGTGGTAGAAAGACCATGCTaGAGGACAACAGAAGTTCAC | + |
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Preference number: 3 (lower is better) Translates to: TDNTVIFRGVPHHYINSVVERPC*RTTEVH Trigger: GTGAACTTCTGTTGTCCTCAAGCATGGTCTTTCTAC...CACACTGTTGATGTAATGATGTGGAACTCCTCTAAAAATTACAGTATTGTCTGT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333628.4 |
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| 3UTR TCA 72 bp | TTTTTAGAGGAGTTCCACATCATTACATCAACAGTGTaGATTTCTAACAGAGGCAAAACTGAGCACCATAGT | + |
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Preference number: 3 (lower is better) Translates to: FLEEFHIITSTV*ISNRGKTEHHS Trigger: ACTATGGTGCTCAGTTTTGCCTCTGTTAGAAATTCACACTGTTGATGTAATGATGTGGAACTCCTCTAAAAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000333628.4 |
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| CDS-3UTR GCA 90 bp | ACAGACAATACTGTAATTTTTAGAGGAGTTCCACATCATTACATCAACAGTGTGCGATCTCGCGCATGGTaGCGGCTGCGGAGCGGGTGG | + |
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Preference number: 4 (lower is better) Translates to: TDNTVIFRGVPHHYINSVRSRAW*RLRSGW Trigger: CCACCCGCTCCGCAGCCGGCACCATGCGCGAGATCG...CACACTGTTGATGTAATGATGTGGAACTCCTCTAAAAATTACAGTATTGTCTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333628.4 |
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| CDS-3UTR CCA 90 bp | ACAGACAATACTGTAATTTTTAGAGGAGTTCCACATCATTACATCAACAGTGTGGCACGATCTCGCGCATaGTGCCGGCTGCGGAGCGGG | + |
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Preference number: 4 (lower is better) Translates to: TDNTVIFRGVPHHYINSVARSRA*CRLRSG Trigger: CCCGCTCCGCAGCCGGCACCATGCGCGAGATCGTGC...CACACTGTTGATGTAATGATGTGGAACTCCTCTAAAAATTACAGTATTGTCTGT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333628.4 |
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| CDS-3UTR TCA 90 bp | ACAGACAATACTGTAATTTTTAGAGGAGTTCCACATCATTACATCAACAGTGTGGATGCACGATTGATCTaGGAAGTTTTTAAGCCTCGT | + |
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Preference number: 4 (lower is better) Translates to: TDNTVIFRGVPHHYINSVDARLI*EVFKPR Trigger: ACGAGGCTTAAAAACTTCTCAGATCAATCGTGCATC...CACACTGTTGATGTAATGATGTGGAACTCCTCTAAAAATTACAGTATTGTCTGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000333628.4 |
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| CDS-3UTR TCA 90 bp | ACAGACAATACTGTAATTTTTAGAGGAGTTCCACATCATTACATCAACAGTGTGCTAAGGATGCACGATTaGTCTGAGAAGTTTTTAAGC | + |
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Preference number: 4 (lower is better) Translates to: TDNTVIFRGVPHHYINSVLRMHD*SEKFLS Trigger: GCTTAAAAACTTCTCAGATCAATCGTGCATCCTTAG...CACACTGTTGATGTAATGATGTGGAACTCCTCTAAAAATTACAGTATTGTCTGT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000333628.4 |
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| CDS CCA 90 bp | TGTGCACGATCTCGCGCATGGTGCCGGCTGCGGAGCGGGTGGCGCTaGCCCTCGGAGCGGTGCGCGGCGTGGACCGGCGGGCTGGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: CARSRAWCRLRSGWR*PSERCAAWTGGLGC Trigger: GCAGCCCAGCCCGCCGGTCCACGCCGCGCACCGCTCCGAGGGCCAGCGCCACCCGCTCCGCAGCCGGCACCATGCGCGAGATCGTGCACA 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000333628.4 ENST00000679907.1 ENST00000680036.1 ENST00000680967.1 |
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| CDS TCA 90 bp | AAGACCATGCTTGAGGACAACAGAAGTTCACTAAGGATGCACGATTaGTCTGAGAAGTTTTTAAGCCTCGTCCTCGCCCTCCTCCTCCTC | + |
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Preference number: 5 (lower is better) Translates to: KTMLEDNRSSLRMHD*SEKFLSLVLALLLL Trigger: GAGGAGGAGGAGGGCGAGGACGAGGCTTAAAAACTTCTCAGATCAATCGTGCATCCTTAGTGAACTTCTGTTGTCCTCAAGCATGGTCTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000333628.4 ENST00000679400.1 ENST00000679907.1 ENST00000680036.1 ENST00000680967.1 |
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| CDS-3UTR CAA 90 bp | ACAGACAATACTGTAATTTTTAGAGGAGTTCCACATCATTACATCAACAGTGTGGCCCGAGGTACATATTaGTTACCAGCAGCCTCATTG | + |
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Preference number: 5 (lower is better) Translates to: TDNTVIFRGVPHHYINSVARGTY*LPAASL Trigger: CAATGAGGCTGCTGGTAACAAATATGTACCTCGGGC...CACACTGTTGATGTAATGATGTGGAACTCCTCTAAAAATTACAGTATTGTCTGT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000333628.4 |
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| CDS CCA 72 bp | GCACGATCTCGCGCATGGTGCCGGCTGCGGAGCGGGTaGCGCTGGCCCTCGGAGCGGTGCGCGGCGTGGACC | + |
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Preference number: 6 (lower is better) Translates to: ARSRAWCRLRSG*RWPSERCAAWT Trigger: GGTCCACGCCGCGCACCGCTCCGAGGGCCAGCGCCACCCGCTCCGCAGCCGGCACCATGCGCGAGATCGTGC 78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENST00000333628.4 ENST00000489942.1 ENST00000679907.1 ENST00000680036.1 ENST00000680967.1 |
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| CDS TCA 72 bp | GGACAACAGAAGTTCACTAAGGATGCACGATTGATCTaGGAAGTTTTTAAGCCTCGTCCTCGCCCTCCTCCT | + |
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Preference number: 6 (lower is better) Translates to: GQQKFTKDARLI*EVFKPRPRPPP Trigger: AGGAGGAGGGCGAGGACGAGGCTTAAAAACTTCTCAGATCAATCGTGCATCCTTAGTGAACTTCTGTTGTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000333628.4 ENST00000679400.1 ENST00000679907.1 ENST00000680036.1 ENST00000680967.1 |
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| CDS TCA 72 bp | CTTGAGGACAACAGAAGTTCACTAAGGATGCACGATTaGTCTGAGAAGTTTTTAAGCCTCGTCCTCGCCCTC | + |
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Preference number: 6 (lower is better) Translates to: LEDNRSSLRMHD*SEKFLSLVLAL Trigger: GAGGGCGAGGACGAGGCTTAAAAACTTCTCAGATCAATCGTGCATCCTTAGTGAACTTCTGTTGTCCTCAAG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 5 transcripts: ENST00000333628.4 ENST00000679400.1 ENST00000679907.1 ENST00000680036.1 ENST00000680967.1 |
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