Pregenerated sensors for TTTY4 (Homo sapiens)
Ensembl gene IDs: ENSG00000226906Ensembl transcript IDs: ENST00000436568.1
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | CCAGCTCTATCGCATAATGCCTCTTGTGGACAATGTCCAGGCAGGTaGGGAGAGTCATATCACCAAAATGATGGGCTCAGAGATATGTCA | + |
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Preference number: 5 (lower is better) Translates to: PALSHNASCGQCPGR*GESYHQNDGLRDMS Trigger: TGACATATCTCTGAGCCCATCATTTTGGTGATATGACTCTCCTCACCTGCCTGGACATTGTCCACAAGAGGCATTATGCGATAGAGCTGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS GCA 90 bp | TCTCTTTGTCAGCAGGGCACTAACCGAAAAGTCAGAAAACTTTGGTaGCAGTCCCAGCTCTATCGCATAATGCCTCTTGTGGACAATGTC | + |
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Preference number: 5 (lower is better) Translates to: SLCQQGTNRKVRKLW*QSQLYRIMPLVDNV Trigger: GACATTGTCCACAAGAGGCATTATGCGATAGAGCTGGGACTGGCACCAAAGTTTTCTGACTTTTCGGTTAGTGCCCTGCTGACAAAGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS CCA 90 bp | CGTTCTCTTTGTCAGCAGGGCACTAACCGAAAAGTCAGAAAACTTTaGTGCCAGTCCCAGCTCTATCGCATAATGCCTCTTGTGGACAAT | + |
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Preference number: 5 (lower is better) Translates to: RSLCQQGTNRKVRKL*CQSQLYRIMPLVDN Trigger: ATTGTCCACAAGAGGCATTATGCGATAGAGCTGGGACTGGCACCAAAGTTTTCTGACTTTTCGGTTAGTGCCCTGCTGACAAAGAGAACG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS GCA 90 bp | CATGTAGGACAGATGCCTTCATCCACCTGTGATGGTGAAATTCCTTaGTGTCAGCTGGGTGTGCATACAATACTCACAATTTATTCTGTG | + |
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Preference number: 5 (lower is better) Translates to: HVGQMPSSTCDGEIP*CQLGVHTILTIYSV Trigger: CACAGAATAAATTGTGAGTATTGTATGCACACCCAGCTGACAGCAAGGAATTTCACCATCACAGGTGGATGAAGGCATCTGTCCTACATG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS GCA 90 bp | AACATTTCTTCTATTGGCTGGGTCCACATAAGAGAGTCATTATCATaGCTATTAGCTGTGCCTAGTTATATGTCACCATCCCGTCTTTGG | + |
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Preference number: 5 (lower is better) Translates to: NISSIGWVHIRESLS*LLAVPSYMSPSRLW Trigger: CCAAAGACGGGATGGTGACATATAACTAGGCACAGCTAATAGGCATGATAATGACTCTCTTATGTGGACCCAGCCAATAGAAGAAATGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS CCA 90 bp | ATGTCCCTAAACCTAGTTATAAGAGGCAACATTTCTTCTATTGGCTaGGTCCACATAAGAGAGTCATTATCATGCCTATTAGCTGTGCCT | + |
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Preference number: 5 (lower is better) Translates to: MSLNLVIRGNISSIG*VHIRESLSCLLAVP Trigger: AGGCACAGCTAATAGGCATGATAATGACTCTCTTATGTGGACCCAGCCAATAGAAGAAATGTTGCCTCTTATAACTAGGTTTAGGGACAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS GCA 72 bp | CAGCAGGGCACTAACCGAAAAGTCAGAAAACTTTGGTaGCAGTCCCAGCTCTATCGCATAATGCCTCTTGTG | + |
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Preference number: 6 (lower is better) Translates to: QQGTNRKVRKLW*QSQLYRIMPLV Trigger: CACAAGAGGCATTATGCGATAGAGCTGGGACTGGCACCAAAGTTTTCTGACTTTTCGGTTAGTGCCCTGCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS GCA 72 bp | TCACTGACTTCACCACGTGAATTCTTTTTCCACCTTTaGTTTCAGGGAGTCTGTCGCATTCCTCACTCTTCC | + |
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Preference number: 6 (lower is better) Translates to: SLTSPREFFFHL*FQGVCRIPHSS Trigger: GGAAGAGTGAGGAATGCGACAGACTCCCTGAAAGCAAAGGTGGAAAAAGAATTCACGTGGTGAAGTCAGTGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS GCA 72 bp | CAGATGCCTTCATCCACCTGTGATGGTGAAATTCCTTaGTGTCAGCTGGGTGTGCATACAATACTCACAATT | + |
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Preference number: 6 (lower is better) Translates to: QMPSSTCDGEIP*CQLGVHTILTI Trigger: AATTGTGAGTATTGTATGCACACCCAGCTGACAGCAAGGAATTTCACCATCACAGGTGGATGAAGGCATCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS GCA 72 bp | TCTATTGGCTGGGTCCACATAAGAGAGTCATTATCATaGCTATTAGCTGTGCCTAGTTATATGTCACCATCC | + |
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Preference number: 6 (lower is better) Translates to: SIGWVHIRESLS*LLAVPSYMSPS Trigger: GGATGGTGACATATAACTAGGCACAGCTAATAGGCATGATAATGACTCTCTTATGTGGACCCAGCCAATAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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| CDS CAA 72 bp | TTCAAGATATGTCATAATGTTCCTGTGTTCTCAGTCTaGAATCATGTCACTACCTTTTCTTTGAGCAGGGCC | + |
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Preference number: 6 (lower is better) Translates to: FKICHNVPVFSV*NHVTTFSLSRA Trigger: GGCCCTGCTCAAAGAAAAGGTAGTGACATGATTCAAGACTGAGAACACAGGAACATTATGACATATCTTGAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000436568.1 |
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