RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TTC39C (Homo sapiens)

Ensembl gene IDs: ENSG00000168234

Ensembl transcript IDs: ENST00000304621.10, ENST00000317571.8, ENST00000540918.2, ENST00000577185.1, ENST00000578150.1, ENST00000581394.1, ENST00000584095.1, ENST00000584250.1, ENST00000584424.1

Found 320 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCTCCTATCGTCTCCAGGAGCAAGGCAGAGACACATTCTTGTCTGTaGGCAGATGACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCT +
Preference number: 1 (lower is better)
Translates to: SPIVSRSKAETHSCL*ADDLSRNHGQPASP
Trigger: AGGACTTGCAGGCTGTCCATGATTTCTAGACAAGTCATCTGCTCACAGACAAGAATGTGTCTCTGCCTTGCTCCTGGAGACGATAGGAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
3UTR CCA 90 bp GTTTTGTTGTTTTGGAGTCTAGAAGCTCCATCTACCCATTCTCCATaGTCTACCACCATGTTAACACAGATTTACCACAGGCGCCATCTG +
Preference number: 1 (lower is better)
Translates to: VLLFWSLEAPSTHSP*STTMLTQIYHRRHL
Trigger: CAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGATGGAGCTTCTAGACTCCAAAACAACAAAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CCA 90 bp TACACCAAACCAAGTTACCAAGCAGATCACAATCAGTTCACAGGTTaGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCA +
Preference number: 1 (lower is better)
Translates to: YTKPSYQADHNQFTG*ISHGTQARKCTQTS
Trigger: TGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGATTGTGATCTGCTTGGTAACTTGGTTTGGTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CCA 90 bp ATCTGCTTTCTATTCATTGCTCTGCTGATAACAGGAATAATTAATTaGGATAAGTCAATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTG +
Preference number: 1 (lower is better)
Translates to: ICFLFIALLITGIIN*DKSICLFVPEFHCL
Trigger: CAGACAGTGAAACTCAGGCACAAAAAGGCAAATTGACTTATCCCAATTAATTATTCCTGTTATCAGCAGAGCAATGAATAGAAAGCAGAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTAGTGCGGACCCTGGGTaGGGAGGGACGGAGCGGGTG +
Preference number: 2 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVSADPG*GGTERV
Trigger: CACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACT...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTAGTGCGGACCCTGGGTaGGGAGGGACGGAGCGGGTG +
Preference number: 2 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFSADPG*GGTERV
Trigger: CACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACT...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTTTAAAGTGCGGACCCTaGGTGGGGAGGGACGGAGCG +
Preference number: 2 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVLKCGP*VGRDGA
Trigger: CGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAA...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR TCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACGAGCTAAGGGGAAAATaGTTAAATCCTGGCACTGTG +
Preference number: 2 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDELRGK*LNPGTV
Trigger: CACAGTGCCAGGATTTAATCATTTTCCCCTTAGCTC...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTTAAAGTGCGGACCCTaGGTGGGGAGGGACGGAGCG +
Preference number: 2 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYLKCGP*VGRDGA
Trigger: CGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAA...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCGGGAAAATGTGTCCCTaGCACAGGTGGTTTTCAGAA +
Preference number: 2 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRGKMCP*HRWFSE
Trigger: TTCTGAAAACCACCTGTGCCAGGGACACATTTTCCC...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAAGGGAAAATGTGTCCCTaGCACAGGTGGTTTTCAGAA +
Preference number: 2 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQGKMCP*HRWFSE
Trigger: TTCTGAAAACCACCTGTGCCAGGGACACATTTTCCC...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAATTAAAGTGCGGACCCTaGGTGGGGAGGGACGGAGCG +
Preference number: 2 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKLKCGP*VGRDGA
Trigger: CGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAA...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACAACCCTCTCCCCAGGTaGTTAGTTATTATTACCATC +
Preference number: 2 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDNPLPR*LVIITI
Trigger: GATGGTAATAATAACTAACCACCTGGGGAGAGGGTT...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CAA 90 bp CAGACTTCAGTCAACCTAATGGGACAGTGTACTCACACTGTGGTTTaGTTGTTTTGGAGTCTAGAAGCTCCATCTACCCATTCTCCATGG +
Preference number: 2 (lower is better)
Translates to: QTSVNLMGQCTHTVV*LFWSLEAPSTHSPW
Trigger: CCATGGAGAATGGGTAGATGGAGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAGGTTGACTGAAGTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CAA 90 bp TTACACCAAACCAAGTTACCAAGCAGATCACAATCAGTTCACAGGTaGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTC +
Preference number: 2 (lower is better)
Translates to: LHQTKLPSRSQSVHR*DKSRHAGQKMYSDF
Trigger: GAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGATTGTGATCTGCTTGGTAACTTGGTTTGGTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACAAAATGATTAAATCCTaGCACTGTGTAGCCCAGCAA +
Preference number: 2 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDKMIKS*HCVAQQ
Trigger: TTGCTGGGCTACACAGTGCCAGGATTTAATCATTTT...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTATTAGCCAGGCACGGTaGCAGGAACTTGTAATCCCA +
Preference number: 2 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEAISQAR*QELVIP
Trigger: TGGGATTACAAGTTCCTGCCACCGTGCCTGGCTAAT...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACAGTGTACTCACACTGTaGTTTTGTTGTTTTGGAGTC +
Preference number: 2 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDSVLTL*FCCFGV
Trigger: GACTCCAAAACAACAAAACCACAGTGTGAGTACACT...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CAA 90 bp ACTTCAGTCAACCTAATGGGACAGTGTACTCACACTGTGGTTTTGTaGTTTTGGAGTCTAGAAGCTCCATCTACCCATTCTCCATGGTCT +
Preference number: 2 (lower is better)
Translates to: TSVNLMGQCTHTVVL*FWSLEAPSTHSPWS
Trigger: AGACCATGGAGAATGGGTAGATGGAGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAGGTTGACTGAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR GCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAACTGAGTTTCACTGTCTaGAAAGTGGGGTTAAGAATA +
Preference number: 2 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQLSFTV*KVGLRI
Trigger: TATTCTTAACCCCACTTTGCAGACAGTGAAACTCAG...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR GCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAAGCTTGTCACCTATGCTaGATGTTAAGAAGAGAGAAA +
Preference number: 2 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQACHLC*MLRREK
Trigger: TTTCTCTCTTCTTAACATGCAGCATAGGTGACAAGC...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR GCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAAAAAGCTTGTCACCTATaGTGCATGTTAAGAAGAGAG +
Preference number: 2 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQKACHL*CMLRRE
Trigger: CTCTCTTCTTAACATGCAGCATAGGTGACAAGCTTT...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCAAAATGATTAAATCCTaGCACTGTGTAGCCCAGCAA +
Preference number: 2 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRKMIKS*HCVAQQ
Trigger: TTGCTGGGCTACACAGTGCCAGGATTTAATCATTTT...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR GCA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCTGGGATAAGTCAATTTaGCTTTTTGTGCCTGAGTTT +
Preference number: 2 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRWDKSI*LFVPEF
Trigger: AAACTCAGGCACAAAAAGGCAAATTGACTTATCCCA...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCTACAGGATCTTGGGTTaGATGTTCCGTTTGATTTTA +
Preference number: 2 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRYRILG*MFRLIL
Trigger: TAAAATCAAACGGAACATCCAACCCAAGATCCTGTA...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR GCA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTCAATTTGCCTTTTTGTaGCTGAGTTTCACTGTCTGC +
Preference number: 2 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEAQFAFL*LSFTVC
Trigger: GCAGACAGTGAAACTCAGGCACAAAAAGGCAAATTG...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTGGGAAAATGTGTCCCTaGCACAGGTGGTTTTCAGAA +
Preference number: 2 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVGKMCP*HRWFSE
Trigger: TTCTGAAAACCACCTGTGCCAGGGACACATTTTCCC...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR TCA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTGAGCTAAGGGGAAAATaGTTAAATCCTGGCACTGTG +
Preference number: 2 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFELRGK*LNPGTV
Trigger: CACAGTGCCAGGATTTAATCATTTTCCCCTTAGCTC...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR TCA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTGTCTATCCAGTTAAGTaGGCTGAACACAAACTAATC +
Preference number: 2 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEAVYPVK*AEHKLI
Trigger: GATTAGTTTGTGTTCAGCTCACTTAACTGGATAGAC...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR GCA 90 bp CATCAGCAAAGGGTTAAGAGCAGTTTACACCAAACCAAGTTACCAAGCAGATCAAAAGCTTGTCACCTATaGTGCATGTTAAGAAGAGAG +
Preference number: 2 (lower is better)
Translates to: HQQRVKSSLHQTKLPSRSKACHL*CMLRRE
Trigger: CTCTCTTCTTAACATGCAGCATAGGTGACAAGCTTT...TGATCTGCTTGGTAACTTGGTTTGGTGTAAACTGCTCTTAACCCTTTGCTGATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR GCA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGGGTGGTCAGGAGATCTaGTTTCTATTCATTGCTCTG +
Preference number: 2 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQGGQEI*FLFIAL
Trigger: CAGAGCAATGAATAGAAAGCAGATCTCCTGACCACC...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR TCA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTATTGCCTTTTTGTGCCTaGGTTTCACTGTCTGCAAAG +
Preference number: 2 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLLPFCA*VSLSAK
Trigger: CTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAA...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATATATGTCAGCTTAACTaGGAAAATGTGTCCCTGGCA +
Preference number: 2 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYICQLN*ENVSLA
Trigger: TGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGAACCCTCTCCCCAGGTaGTTAGTTATTATTACCATC +
Preference number: 2 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQNPLPR*LVIITI
Trigger: GATGGTAATAATAACTAACCACCTGGGGAGAGGGTT...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR GCA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTCTGCTTTCTATTCATTaGTCTGCTGATAACAGGAAT +
Preference number: 2 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFLLSIH*SADNRN
Trigger: ATTCCTGTTATCAGCAGAGCAATGAATAGAAAGCAG...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CCA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTAATATGTCAGCTTAACTaGGAAAATGTGTCCCTGGCA +
Preference number: 2 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLICQLN*ENVSLA
Trigger: TGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAAAACCACAGGTTaGCAGTACCGGGCATGGAGG +
Preference number: 3 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDFKTTG*QYRAWR
Trigger: CCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAA...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CCA 72 bp CCAAGTTACCAAGCAGATCACAATCAGTTCACAGGTTaGATAAGTCACGGCACGCAGGCCAGAAAATGTACT +
Preference number: 3 (lower is better)
Translates to: PSYQADHNQFTG*ISHGTQARKCT
Trigger: AGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGATTGTGATCTGCTTGGTAACTTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACAGAGTGTCCATCGCTTaGAAACATTCTGTAGACAAT +
Preference number: 3 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDRVSIA*KHSVDN
Trigger: ATTGTCTACAGAATGTTTCAAAGCGATGGACACTCT...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTGCAAAACGCAAAATaGTCTATCCAGTTAAGTGAG +
Preference number: 3 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDLQNAK*SIQLSE
Trigger: CTCACTTAACTGGATAGACAATTTTGCGTTTTGCAA...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CCA 72 bp TTTTGGAGTCTAGAAGCTCCATCTACCCATTCTCCATaGTCTACCACCATGTTAACACAGATTTACCACAGG +
Preference number: 3 (lower is better)
Translates to: FWSLEAPSTHSP*STTMLTQIYHR
Trigger: CCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGATGGAGCTTCTAGACTCCAAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGTTCAAAACCACAGGTTaGCAGTACCGGGCATGGAGG +
Preference number: 3 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQFKTTG*QYRAWR
Trigger: CCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAA...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp GAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGTGCTATGTTATTCACTTGTTCCTACAGGATCTaGGGTTGGATGTTCCGTTTG +
Preference number: 3 (lower is better)
Translates to: EFHCLQSGVKNICAMLFTCSYRI*GWMFRL
Trigger: CAAACGGAACATCCAACCCAAGATCCTGTAGGAACA...AGTGAATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTACCTACAGGATGGTGTaGCAAAACGCAAAATTGTCT +
Preference number: 3 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEATYRMV*QNAKLS
Trigger: AGACAATTTTGCGTTTTGCAACACCATCCTGTAGGT...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp CATCAGCAAAGGGTTAAGAGCAGTTTACACCAAACCAAGTTACCAAGCAGATCACACACTGTGGTTTTGTaGTTTTGGAGTCTAGAAGCT +
Preference number: 3 (lower is better)
Translates to: HQQRVKSSLHQTKLPSRSHTVVL*FWSLEA
Trigger: AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTG...TGATCTGCTTGGTAACTTGGTTTGGTGTAAACTGCTCTTAACCCTTTGCTGATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTCTACAGGATCTTGGGTaGGATGTTCCGTTTGATTTT +
Preference number: 3 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVLQDLG*DVPFDF
Trigger: AAAATCAAACGGAACATCCAACCCAAGATCCTGTAG...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTAGATGTCCAATATTTTaGGGCACCAATTTTGCTCTT +
Preference number: 3 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEARCPIF*GTNFAL
Trigger: AAGAGCAAAATTGGTGCCCAAAAATATTGGACATCT...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGCTACAGGATCTTGGGTaGGATGTTCCGTTTGATTTT +
Preference number: 3 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQLQDLG*DVPFDF
Trigger: AAAATCAAACGGAACATCCAACCCAAGATCCTGTAG...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATAGTCAATTTGCCTTTTaGTGCCTGAGTTTCACTGTC +
Preference number: 3 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYSQFAF*CLSFTV
Trigger: GACAGTGAAACTCAGGCACAAAAAGGCAAATTGACT...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR-3UTR CAA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGAGTCAATTTGCCTTTTaGTGCCTGAGTTTCACTGTC +
Preference number: 3 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQSQFAF*CLSFTV
Trigger: GACAGTGAAACTCAGGCACAAAAAGGCAAATTGACT...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR GCA 72 bp AGTCAATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTaGAAAGTGGGGTTAAGAATATCTGTGCTATGTTAT +
Preference number: 3 (lower is better)
Translates to: SQFAFLCLSFTV*KVGLRISVLCY
Trigger: ATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAAATTGACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTAGTGCGGACCCTGGGTaGGGAGGGACGGAGCGGGTG +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSSADPG*GGTERV
Trigger: CACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TCCTCCCAAGAATCTGACATGGTTTTAGGCAGAGAAGAGGCTCAGAGGCCTGCTGAGCCCGGCTCTACCTaGCCGGAGCCAAGCGGAGCC +
Preference number: 4 (lower is better)
Translates to: SSQESDMVLGREEAQRPAEPGST*PEPSGA
Trigger: GGCTCCGCTTGGCTCCGGGCAGGTAGAGCCGGGCTC...AGCAGGCCTCTGAGCCTCTTCTCTGCCTAAAACCATGTCAGATTCTTGGGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR GCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACGGGCGTGCGAGGCCCTaGGCTGGGCCGAGGCGAGAT +
Preference number: 4 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDGRARP*AGPRRD
Trigger: ATCTCGCCTCGGCCCAGCGCAGGGCCTCGCACGCCC...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR GCA 90 bp GACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATGGGCGTGCGAGGCCCTaGGCTGGGCCGAGGCGAGAT +
Preference number: 4 (lower is better)
Translates to: DLSRNHGQPASPSSPPKNGRARP*AGPRRD
Trigger: ATCTCGCCTCGGCCCAGCGCAGGGCCTCGCACGCCC...ATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGACAAGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR GCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTTCACTGCCCTACACTTaGAGGGAGGTGGACTTCCCT +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSSLPYT*REVDFP
Trigger: AGGGAAGTCCACCTCCCTGCAAGTGTAGGGCAGTGA...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR GCA 90 bp TCCTCCCAAGAATCTGACATGGTTTTAGGCAGAGAAGAGGCTCAGAGGCCTGCTCCCACCGCCCAGGACTaGTCGGACACACGCACGCGA +
Preference number: 4 (lower is better)
Translates to: SSQESDMVLGREEAQRPAPTAQD*SDTRTR
Trigger: TCGCGTGCGTGTGTCCGAGCAGTCCTGGGCGGTGGG...AGCAGGCCTCTGAGCCTCTTCTCTGCCTAAAACCATGTCAGATTCTTGGGAGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR CCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTAGTTCAAGACCAGCCTaGCCAAGGTGGTGGAACCCT +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSSSRPA*PRWWNP
Trigger: AGGGTTCCACCACCTTGGCCAGGCTGGTCTTGAACT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp ACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGCGAGGCCCTGCGCTaGGCCGAGGCGAGATCGGGA +
Preference number: 4 (lower is better)
Translates to: TCLEIMDSLQVLPVLPRICEALR*AEARSG
Trigger: TCCCGATCTCGCCTCGGCCCAGCGCAGGGCCTCGCA...GATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGACAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR CCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTACAGAGCGCTTTGGTTaGGGTTTGCTTCCGAAATCG +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSTERFG*GLLPKS
Trigger: CGATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAGTGCGGACCCTGGGTaGGGAGGGACGGAGCGGGTG +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRSADPG*GGTERV
Trigger: CACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACT...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTATGATTATCTGCCTCTaGAGCCGATCAACCATAGAG +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSMIICL*SRSTIE
Trigger: CTCTATGGTTGATCGGCTTCAGAGGCAGATAATCAT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR TCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTGCTCCTGAAGGGCATTaGTGTCCAGATAGCATTTAT +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSAPEGH*CPDSIY
Trigger: ATAAATGCTATCTGGACATCAATGCCCTTCAGGAGC...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR GCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTGGCTCCCTGACAAACTaGAGTCAAGTAGGCATAATA +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSGSLTN*SQVGII
Trigger: TATTATGCCTACTTGACTGCAGTTTGTCAGGGAGCC...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTGAGCCCGGCTCTACCTaGCCGGAGCCAAGCGGAGCC +
Preference number: 4 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEAEPGST*PEPSGA
Trigger: GGCTCCGCTTGGCTCCGGGCAGGTAGAGCCGGGCTC...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTGGTTTGGGGGCACCATaGATATGCAAAGGTGAAAAA +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSGLGAP*ICKGEK
Trigger: TTTTTCACCTTTGCATATCCATGGTGCCCCCAAACC...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR CCA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCTTAAAGTGCGGACCCTaGGTGGGGAGGGACGGAGCG +
Preference number: 4 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRLKCGP*VGRDGA
Trigger: CGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAA...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTCCTTCAGCCACAATGTaGTTATCATTTGCAGCATCA +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSPSATM*LSFAAS
Trigger: TGATGCTGCAAATGATAATCACATTGTGGCTGAAGG...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR TCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTAAGGCACTGTTGATTTaGCACTCTAGTCGTTGTATC +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSKALLI*HSSRCI
Trigger: GATACAACGACTAGAGTGTCAAATCAACAGTGCCTT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR TCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTGAACACAAACTAATCTaGAGTCCTGAACTCTCTGTG +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSEHKLI*SPELSV
Trigger: CACAGAGAGTTCAGGACTTCAGATTAGTTTGTGTTC...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTATTCTGAACGGTGCATaGATTTCTTTCTTGCTCTGC +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSILNGA*ISFLLC
Trigger: GCAGAGCAAGAAAGAAATGCATGCACCGTTCAGAAT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR CCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTATATGTCAGCTTAACTaGGAAAATGTGTCCCTGGCA +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSICQLN*ENVSLA
Trigger: TGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTAACCCTCTCCCCAGGTaGTTAGTTATTATTACCATC +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSNPLPR*LVIITI
Trigger: GATGGTAATAATAACTAACCACCTGGGGAGAGGGTT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTCTCATTAGTGGGCTATaGTTTCACAAAAGAAGCTTG +
Preference number: 4 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSLISGL*FHKRSL
Trigger: CAAGCTTCTTTTGTGAAATCATAGCCCACTAATGAG...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000304621.10
CDS-3UTR GCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGATTCTTGCTCTGCTGGTaGCAGGGCTCCTCTCACTGC +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGFLLCW*QGSSHC
Trigger: GCAGTGAGAGGAGCCCTGGCACCAGCAGAGCAAGAA...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR GCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTCCAGGTGCGTCTCCTaGTGCTTTCTCTATGCTTCC +
Preference number: 4 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDSRCVS*CFLYAS
Trigger: GGAAGCATAGAGAAAGCAGCAGGAGACGCACCTGGA...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR CCA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTGCGAGGCCCTGCGCTaGGCCGAGGCGAGATCGGGA +
Preference number: 4 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYCEALR*AEARSG
Trigger: TCCCGATCTCGCCTCGGCCCAGCGCAGGGCCTCGCA...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGAGCCTGGCCAAGGTGGTaGAACCCTGCCTCTACTAAA +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGAWPRW*NPASTK
Trigger: TTTAGTAGAGGCAGGGTTCCACCACCTTGGCCAGGC...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAACACTTGCAGGGAGGTaGACTTCCCTCCCCTGGGCT +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRTLAGR*TSLPWA
Trigger: AGCCCAGGGGAGGGAAGTCCACCTCCCTGCAAGTGT...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR TCA 90 bp GACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATGGCTCAGAGGCCTGCTaGCTCAACATCTCTTACAAG +
Preference number: 4 (lower is better)
Translates to: DLSRNHGQPASPSSPPKNGSEAC*LNISYK
Trigger: CTTGTAAGAGATGTTGAGTCAGCAGGCCTCTGAGCC...ATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGACAAGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR TCA 90 bp TCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTTTAGGCTCAGAGGCCTGCTaGCTCAACATCTCTTACAAG +
Preference number: 4 (lower is better)
Translates to: SWTACKSFQSSQESDMVLGSEAC*LNISYK
Trigger: CTTGTAAGAGATGTTGAGTCAGCAGGCCTCTGAGCC...TAAAACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR GCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGAGCTTTGGTTGGGGTTTaGTTCCGAAATCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGALVGV*FRNRSA
Trigger: GGCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGC...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCTTCCTCCCCCTCCAATaGTCCCAAGTGCCCATTATC +
Preference number: 4 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRFLPLQ*SQVPII
Trigger: GATAATGGGCACTTGGGAGCATTGGAGGGGGAGGAA...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR GCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAACTGCTGCTTTCTCTATaGTTCCTCCCCCTCCAATGC +
Preference number: 4 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQLLLSL*FLPLQC
Trigger: GCATTGGAGGGGGAGGAAGCATAGAGAAAGCAGCAG...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR GCA 90 bp GATTCTTCAAAACCACAGGTTTGCAGTACCGGGCATGGAGGTAAATTAAATGACCAGGGCTCCTCTCACTaGCCTACACTTGCAGGGAGG +
Preference number: 4 (lower is better)
Translates to: DSSKPQVCSTGHGGKLNDQGSSH*PTLAGR
Trigger: CCTCCCTGCAAGTGTAGGGCAGTGAGAGGAGCCCTG...GTCATTTAATTTACCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAAGAATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR GCA 90 bp TCCTCCCAAGAATCTGACATGGTTTTAGGCAGAGAAGAGGCTCAGAGGCCTGCTGCATCTCTCTGCTGTTaGTGGGAGAGAGTTTTCCAA +
Preference number: 4 (lower is better)
Translates to: SSQESDMVLGREEAQRPAASLCC*WERVFQ
Trigger: TTGGAAAACTCTCTCCCAGCAACAGCAGAGAGATGC...AGCAGGCCTCTGAGCCTCTTCTCTGCCTAAAACCATGTCAGATTCTTGGGAGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000577185.1
CDS-3UTR GCA 90 bp TCTGACATGGTTTTAGGCAGAGAAGAGGCTCAGAGGCCTGCTGACTCAACATCTAAATCATGGACAGCCTaGAAGTCCTTCCAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: SDMVLGREEAQRPADSTSKSWTA*KSFQSS
Trigger: GGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTT...AGATGTTGAGTCAGCAGGCCTCTGAGCCTCTTCTCTGCCTAAAACCATGTCAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR CCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAAAGTGCGGACCCTGGGTaGGGAGGGACGGAGCGGGTG +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKSADPG*GGTERV
Trigger: CACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACT...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp ATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGGACTTCCCTCCCCTaGGCTTCCAGGTGCGTCTCC +
Preference number: 4 (lower is better)
Translates to: ICLFVPEFHCLQSGVKNIWTSLP*ASRCVS
Trigger: GGAGACGCACCTGGAAGCCCAGGGGAGGGAAGTCCA...GATATTCTTAACCCCACTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR TCA 90 bp ACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTTTAGGCAGAGTCCTCCCAAGAATCTaGCATGGTTTTAGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: TACKSFQSSQESDMVLGRVLPRI*HGFRQR
Trigger: TCTCTGCCTAAAACCATGTCAGATTCTTGGGAGGAC...TCTGCCTAAAACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR GCA 90 bp TCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTTTAAAATCATGGACAGCCTaGAAGTCCTTCCAGTCCTCC +
Preference number: 4 (lower is better)
Translates to: SWTACKSFQSSQESDMVLKSWTA*KSFQSS
Trigger: GGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTT...TAAAACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR CCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAAACACACAGAGCGCTTTaGTTGGGGTTTGCTTCCGAA +
Preference number: 4 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQTHRAL*LGFASE
Trigger: TTCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGT...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAGAGGCCAGAGCAGCATaGATGCGGACATGCAATCTG +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRREARAA*MRTCNL
Trigger: CAGATTGCATGTCCGCATCCATGCTGCTCTGGCCTC...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTATTGTTTGAAAAGCTaGTCCGACTCCCTGAAGCCG +
Preference number: 4 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDYCLKS*SDSLKP
Trigger: CGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAATA...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CCA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCATTAGCCAGGCACGGTaGCAGGAACTTGTAATCCCA +
Preference number: 4 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRISQAR*QELVIP
Trigger: TGGGATTACAAGTTCCTGCCACCGTGCCTGGCTAAT...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAGGACTCAGCCTTTCTaGGCCAGTGGCAGGATAGTT +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRRTQPF*ASGRIV
Trigger: AACTATCCTGCCACTGGCTCAGAAAGGCTGAGTCCT...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304621.10
CDS-3UTR TCA 90 bp ACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCACAGAGAAGTATCTTTaGAGGGGCATCTCTCTGCTG +
Preference number: 4 (lower is better)
Translates to: TCLEIMDSLQVLPVLPRITEKYL*RGISLL
Trigger: CAGCAGAGAGATGCCCCTTCAAAGATACTTCTCTGT...GATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGACAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000577185.1
CDS-3UTR TCA 90 bp TCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATTCTCCAGGAAGCGCTaGGGTTTTCTCAGAAGTCAA +
Preference number: 4 (lower is better)
Translates to: SRNHGQPASPSSPPKNLTFSRKR*GFLRSQ
Trigger: TTGACTTCTGAGAAAACCTCAGCGCTTCCTGGAGAA...TGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR TCA 90 bp ACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTTCTCCAGGAAGCGCTaGGGTTTTCTCAGAAGTCAA +
Preference number: 4 (lower is better)
Translates to: TCLEIMDSLQVLPVLPRIFSRKR*GFLRSQ
Trigger: TTGACTTCTGAGAAAACCTCAGCGCTTCCTGGAGAA...GATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGACAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR TCA 90 bp AAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTGTCCTCCCAAGAATCTaGCATGGTTTTAGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: KSWTACKSFQSSQESDMVVLPRI*HGFRQR
Trigger: TCTCTGCCTAAAACCATGTCAGATTCTTGGGAGGAC...AACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR TCA 90 bp ACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTTTAGGCAGAGAAAAAGTCAACAGATaGGTTTCCTGTCTTTCCCGC +
Preference number: 4 (lower is better)
Translates to: TACKSFQSSQESDMVLGREKVNR*VSCLSR
Trigger: GCGGGAAAGACAGGAAACTCATCTGTTGACTTTTTC...TCTGCCTAAAACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR TCA 90 bp TCCTCCCAAGAATCTGACATGGTTTTAGGCAGAGAAGAGGCTCAGAGGCCTGCTAACACACCACTGAGTTaGAGAGGATGGAAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: SSQESDMVLGREEAQRPANTPLS*RGWKKS
Trigger: TGACTTTTTCCATCCTCTTCAACTCAGTGGTGTGTT...AGCAGGCCTCTGAGCCTCTTCTCTGCCTAAAACCATGTCAGATTCTTGGGAGGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR GCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAGCTTTGGTTGGGGTTTaGTTCCGAAATCGCTCTGCC +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRALVGV*FRNRSA
Trigger: GGCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGC...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACGCATGGATGCGGACATaGAATCTGTTTTCAAAGTCG +
Preference number: 4 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDAWMRT*NLFSKS
Trigger: CGACTTTGAAAACAGATTGCATGTCCGCATCCATGC...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCCCAGAGCAGCATGGATaGGGACATGCAATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRPEQHG*GHAICF
Trigger: AAAACAGATTGCATGTCCGCATCCATGCTGCTCTGG...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp CATCAGCAAAGGGTTAAGAGCAGTTTACACCAAACCAAGTTACCAAGCAGATCAGAGGCCAGAGCAGCATaGATGCGGACATGCAATCTG +
Preference number: 4 (lower is better)
Translates to: HQQRVKSSLHQTKLPSRSEARAA*MRTCNL
Trigger: CAGATTGCATGTCCGCATCCATGCTGCTCTGGCCTC...TGATCTGCTTGGTAACTTGGTTTGGTGTAAACTGCTCTTAACCCTTTGCTGATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp AAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTTATTGTTTGAAAAGCTaGTCCGACTCCCTGAAGCCG +
Preference number: 4 (lower is better)
Translates to: KSWTACKSFQSSQESDMVYCLKS*SDSLKP
Trigger: CGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAATA...AACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR CCA 90 bp GACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATACATCTCTGCATCTGTaGACTCTCCTATCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: DLSRNHGQPASPSSPPKNTSLHL*TLLSSP
Trigger: TGGAGACGATAGGAGAGTCCACAGATGCAGAGATGT...ATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGACAAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR CCA 90 bp AAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTACATCTCTGCATCTGTaGACTCTCCTATCGTCTCCA +
Preference number: 4 (lower is better)
Translates to: KSWTACKSFQSSQESDMVTSLHL*TLLSSP
Trigger: TGGAGACGATAGGAGAGTCCACAGATGCAGAGATGT...AACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR TCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACAAGGCACTGTTGATTTaGCACTCTAGTCGTTGTATC +
Preference number: 4 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDKALLI*HSSRCI
Trigger: GATACAACGACTAGAGTGTCAAATCAACAGTGCCTT...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR TCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGAAAATCCTCCTTTGCTTaGAGAAGTAGAGCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGKSSFA*RSRALP
Trigger: AGGCAGAGCTCTACTTCTTCAAGCAAAGGAGGATTT...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGAGATTTCTGTATTGTTTaGAAAGCTGGTCCGACTCCC +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGDFCIV*KAGPTP
Trigger: GGGAGTCGGACCAGCTTTTCAAACAATACAGAAATC...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR TCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGACCTGACAGCTTATTCTaGACGGTGCATGCATTTCTT +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGPDSLF*TVHAFL
Trigger: AAGAAATGCATGCACCGTTCAGAATAAGCTGTCAGG...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR TCA 90 bp ACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTTTAGGCAGATTTTTCTGTATTGTTTaGAAAGCTGGTCCGACTCCC +
Preference number: 4 (lower is better)
Translates to: TACKSFQSSQESDMVLGRFFCIV*KAGPTP
Trigger: GGGAGTCGGACCAGCTTTTCAAACAATACAGAAAAA...TCTGCCTAAAACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR GCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGAGCATGGATGCGGACATaGAATCTGTTTTCAAAGTCG +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGAWMRT*NLFSKS
Trigger: CGACTTTGAAAACAGATTGCATGTCCGCATCCATGC...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAACAGAGCGCTTTGGTTaGGGTTTGCTTCCGAAATCG +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRTERFG*GLLPKS
Trigger: CGATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGT...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAACACACAGAGCGCTTTaGTTGGGGTTTGCTTCCGAA +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKTHRAL*LGFASE
Trigger: TTCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGT...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGAGGGGAAGGAACAGTTTaGAAGAGCTTTCCACAAGTA +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGGEGTV*KSFPQV
Trigger: TACTTGTGGAAAGCTCTTCCAAACTGTTCCTTCCCC...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CAA 72 bp ACCAAGTTACCAAGCAGATCACAATCAGTTCACAGGTaGGATAAGTCACGGCACGCAGGCCAGAAAATGTAC +
Preference number: 4 (lower is better)
Translates to: TKLPSRSQSVHR*DKSRHAGQKMY
Trigger: GTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGATTGTGATCTGCTTGGTAACTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAGCTCGCTGGAAGTACTaGACAGCATCTTCTGAGTTT +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRARWKY*TASSEF
Trigger: AAACTCAGAAGATGCTGTTCAGTACTTCCAGCGAGC...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTGGAAACAGTCTACTaGAAAGTGGTCAGTAACAGA +
Preference number: 4 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDLETVY*KVVSNR
Trigger: TCTGTTACTGACCACTTTTCAGTAGACTGTTTCCAA...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCGAACACAAACTAATCTaGAGTCCTGAACTCTCTGTG +
Preference number: 4 (lower is better)
Translates to: STHSPWSTTMLTQIYHRREHKLI*SPELSV
Trigger: CACAGAGAGTTCAGGACTTCAGATTAGTTTGTGTTC...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACGTCTATCCAGTTAAGTaGGCTGAACACAAACTAATC +
Preference number: 4 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDVYPVK*AEHKLI
Trigger: GATTAGTTTGTGTTCAGCTCACTTAACTGGATAGAC...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp AGTCAACAGATGAGTTTCCTGTCTTTCCCGCCAGTTCCCTTAAACCATTTCTGCGAAAAAGTCAACAGATaGGTTTCCTGTCTTTCCCGC +
Preference number: 4 (lower is better)
Translates to: SQQMSFLSFPPVPLNHFCEKVNR*VSCLSR
Trigger: GCGGGAAAGACAGGAAACTCATCTGTTGACTTTTTC...GCAGAAATGGTTTAAGGGAACTGGCGGGAAAGACAGGAAACTCATCTGTTGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR TCA 90 bp ACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCAACACACCACTGAGTTaGAGAGGATGGAAAAAGTCA +
Preference number: 4 (lower is better)
Translates to: TCLEIMDSLQVLPVLPRINTPLS*RGWKKS
Trigger: TGACTTTTTCCATCCTCTTCAACTCAGTGGTGTGTT...GATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGACAAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR TCA 90 bp ACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTTTCCAACACACCACTaGGTTGAAGAGGATGGAAAA +
Preference number: 4 (lower is better)
Translates to: TCLEIMDSLQVLPVLPRIFPTHH*VEEDGK
Trigger: TTTTCCATCCTCTTCAACTCAGTGGTGTGTTGGAAA...GATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGACAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR TCA 90 bp TCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATTTCCAACACACCACTaGGTTGAAGAGGATGGAAAA +
Preference number: 4 (lower is better)
Translates to: SRNHGQPASPSSPPKNLTFPTHH*VEEDGK
Trigger: TTTTCCATCCTCTTCAACTCAGTGGTGTGTTGGAAA...TGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR GCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAGAAGAAGTAGAGCTCTaGCTCTTCCTACAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKEEVEL*LFLQSL
Trigger: CAGAGACTGTAGGAAGAGGCAGAGCTCTACTTCTTC...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAGAAGAAGTAGAGCTCTaGCTCTTCCTACAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRREEVEL*LFLQSL
Trigger: CAGAGACTGTAGGAAGAGGCAGAGCTCTACTTCTTC...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAACCAGAGCAGCATGGATaGGGACATGCAATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKPEQHG*GHAICF
Trigger: AAAACAGATTGCATGTCCGCATCCATGCTGCTCTGG...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTTCAAAACCACAGGTTTaGAGTACCGGGCATGGAGGT +
Preference number: 4 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEASKPQV*STGHGG
Trigger: ACCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGA...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp ATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCAGGTGCGTCTCCTGCTaGTTTCTCTATGCTTCCTCC +
Preference number: 4 (lower is better)
Translates to: ICLFVPEFHCLQSGVKNIRCVSC*FLYASS
Trigger: GGAGGAAGCATAGAGAAAGCAGCAGGAGACGCACCT...GATATTCTTAACCCCACTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR CCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAATCATCCTCTGCAGGTTaGGGAAGGAACAGTTTGGAA +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKSSSAG*GRNSLE
Trigger: TTCCAAACTGTTCCTTCCCCAACCTGCAGAGGATGA...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAGGGAAAATGTGTCCCTaGCACAGGTGGTTTTCAGAA +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKGKMCP*HRWFSE
Trigger: TTCTGAAAACCACCTGTGCCAGGGACACATTTTCCC...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGCCTGGCCAAGGTGGTaGAACCCTGCCTCTACTAAA +
Preference number: 4 (lower is better)
Translates to: EFHCLQSGVKNICAMLFTAWPRW*NPASTK
Trigger: TTTAGTAGAGGCAGGGTTCCACCACCTTGGCCAGGC...AGTGAATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTAGTTCAAGACCAGCCTaGCCAAGGTGGTGGAACCCT +
Preference number: 4 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFSSRPA*PRWWNP
Trigger: AGGGTTCCACCACCTTGGCCAGGCTGGTCTTGAACT...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTTCTTTCTTGCTCTGCTaGTGCCAGGGCTCCTCTCAC +
Preference number: 4 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFSFLLC*CQGSSH
Trigger: GTGAGAGGAGCCCTGGCACCAGCAGAGCAAGAAAGA...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR TCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAAAATCCTCCTTTGCTTaGAGAAGTAGAGCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKKSSFA*RSRALP
Trigger: AGGCAGAGCTCTACTTCTTCAAGCAAAGGAGGATTT...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
44% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAATTGGAAACAGTCTACTaGAAAGTGGTCAGTAACAGA +
Preference number: 4 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQLETVY*KVVSNR
Trigger: TCTGTTACTGACCACTTTTCAGTAGACTGTTTCCAA...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAGCATGGATGCGGACATaGAATCTGTTTTCAAAGTCG +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKAWMRT*NLFSKS
Trigger: CGACTTTGAAAACAGATTGCATGTCCGCATCCATGC...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGACTGAGTTTCACTGTCTaGAAAGTGGGGTTAAGAATA +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGLSFTV*KVGLRI
Trigger: TATTCTTAACCCCACTTTGCAGACAGTGAAACTCAG...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAATCCTGGAGGAGAAGCTaGAGGCTTCTCAGAGGACGG +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKSWRRS*RLLRGR
Trigger: CCGTCCTCTGAGAAGCCTGCAGCTTCTCCTCCAGGA...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR GCA 90 bp ACTTGTCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCCTTTTCTTACATCTCTaGATCTGTGGACTCTCCTAT +
Preference number: 4 (lower is better)
Translates to: TCLEIMDSLQVLPVLPRILFLHL*ICGLSY
Trigger: ATAGGAGAGTCCACAGATGCAGAGATGTAAGAAAAG...GATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGACAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR GCA 90 bp TCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTTTACTTTTCTTACATCTCTaGATCTGTGGACTCTCCTAT +
Preference number: 4 (lower is better)
Translates to: SWTACKSFQSSQESDMVLLFLHL*ICGLSY
Trigger: ATAGGAGAGTCCACAGATGCAGAGATGTAAGAAAAG...TAAAACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000577185.1
ENST00000584250.1
CDS-3UTR CCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAGTTCCAAAGCAGTGTaGAAAGATGTCAAGGCACTG +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRSSKAV*KDVKAL
Trigger: CAGTGCCTTGACATCTTTCCACACTGCTTTGGAACT...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAGGGGAAGGAACAGTTTaGAAGAGCTTTCCACAAGTA +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKGEGTV*KSFPQV
Trigger: TACTTGTGGAAAGCTCTTCCAAACTGTTCCTTCCCC...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATGAGGCCAGAGCAGCATaGATGCGGACATGCAATCTG +
Preference number: 4 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYEARAA*MRTCNL
Trigger: CAGATTGCATGTCCGCATCCATGCTGCTCTGGCCTC...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GATTCTTCAAAACCACAGGTTTGCAGTACCGGGCATGGAGGTAAATTAAATGACGGGAAAATGTGTCCCTaGCACAGGTGGTTTTCAGAA +
Preference number: 4 (lower is better)
Translates to: DSSKPQVCSTGHGGKLNDGKMCP*HRWFSE
Trigger: TTCTGAAAACCACCTGTGCCAGGGACACATTTTCCC...GTCATTTAATTTACCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAAGAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAAAAAATGATTAAATCCTaGCACTGTGTAGCCCAGCAA +
Preference number: 4 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQKMIKS*HCVAQQ
Trigger: TTGCTGGGCTACACAGTGCCAGGATTTAATCATTTT...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
44% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAAAGTGTACTCACACTGTaGTTTTGTTGTTTTGGAGTC +
Preference number: 4 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQSVLTL*FCCFGV
Trigger: GACTCCAAAACAACAAAACCACAGTGTGAGTACACT...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAGGATCCACCCACCTTTaGTATAAGCTGACAATTCTT +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKGSTHL*YKLTIL
Trigger: AAGAATTGTCAGCTTATATCAAAGGTGGGTGGATCC...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR TCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGACCTTCAGCCACAATGTaGTTATCATTTGCAGCATCA +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRPSATM*LSFAAS
Trigger: TGATGCTGCAAATGATAATCACATTGTGGCTGAAGG...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR TCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAATGTCAAGGCACTGTTaGTTTGACACTCTAGTCGTT +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRMSRHC*FDTLVV
Trigger: AACGACTAGAGTGTCAAATCAACAGTGCCTTGACAT...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR TCA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTTTGCCTTTTTGTGCCTaGGTTTCACTGTCTGCAAAG +
Preference number: 4 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEALPFCA*VSLSAK
Trigger: CTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAA...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAACACCAGCAAATATTTTaGGGCCAAAATCTATGTTCA +
Preference number: 4 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQHQQIF*GQNLCS
Trigger: TGAACATAGATTTTGGCCTCAAAATATTTGCTGGTG...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTAACAGCCAGACGACCTaGCAGCTTATTCTGAACGGT +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVNSQTT*QLILNG
Trigger: ACCGTTCAGAATAAGCTGTCAGGTCGTCTGGCTGTT...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR GCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTAGCTTCATCCAGGCCTaGCTTGTTATCACTGCCATC +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVSFIQA*LVITAI
Trigger: GATGGCAGTGATAACAAGGCAGGCCTGGATGAAGCT...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR GCA 90 bp ATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCCCAGAGCAGCATGGATaGGGACATGCAATCTGTTTT +
Preference number: 4 (lower is better)
Translates to: ICLFVPEFHCLQSGVKNIPEQHG*GHAICF
Trigger: AAAACAGATTGCATGTCCGCATCCATGCTGCTCTGG...GATATTCTTAACCCCACTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAACAATTTGCCTTTTTGTaGCTGAGTTTCACTGTCTGC +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKQFAFL*LSFTVC
Trigger: GCAGACAGTGAAACTCAGGCACAAAAAGGCAAATTG...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGACAATTTGCCTTTTTGTaGCTGAGTTTCACTGTCTGC +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRQFAFL*LSFTVC
Trigger: GCAGACAGTGAAACTCAGGCACAAAAAGGCAAATTG...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGATGTCATGATTCAGAATaGTCCATGATGATGACAGAA +
Preference number: 4 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGCHDSE*SMMMTE
Trigger: TTCTGTCATCATCATGGAGCATTCTGAATCATGACA...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTCCAATGCTCCCAAGTaGCCATTATCCCCACAGCCA +
Preference number: 4 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYSNAPK*PLSPQP
Trigger: TGGCTGTGGGGATAATGGGCACTTGGGAGCATTGGA...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR GCA 90 bp TCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACACAACCACTCATATACTaGCTTCTATTAACAGTGCAT +
Preference number: 4 (lower is better)
Translates to: SRNHGQPASPSSPPKNLTQPLIY*LLLTVH
Trigger: ATGCACTGTTAATAGAAGGCAGTATATGAGTGGTTG...TGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000577185.1
CDS-3UTR CCA 90 bp GAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGTGCTATGTTATTCACTACAGAGCGCTTTGGTTaGGGTTTGCTTCCGAAATCG +
Preference number: 4 (lower is better)
Translates to: EFHCLQSGVKNICAMLFTTERFG*GLLPKS
Trigger: CGATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGT...AGTGAATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GATTCTTCAAAACCACAGGTTTGCAGTACCGGGCATGGAGGTAAATTAAATGACGGGGAAGGAACAGTTTaGAAGAGCTTTCCACAAGTA +
Preference number: 4 (lower is better)
Translates to: DSSKPQVCSTGHGGKLNDGEGTV*KSFPQV
Trigger: TACTTGTGGAAAGCTCTTCCAAACTGTTCCTTCCCC...GTCATTTAATTTACCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAAGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAATATGTCAGCTTAACTaGGAAAATGTGTCCCTGGCA +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRICQLN*ENVSLA
Trigger: TGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTTTTGAGAGGACAAGGTaGGTGGATCATGAGGTCAGG +
Preference number: 4 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFFERTR*VDHEVR
Trigger: CCTGACCTCATGATCCACCCACCTTGTCCTCTCAAA...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
43% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGATCTACCCATTCTCCATaGTCTACCACCATGTTAACA +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRSTHSP*STTMLT
Trigger: TGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CAA 72 bp AACCTAATGGGACAGTGTACTCACACTGTGGTTTTGTaGTTTTGGAGTCTAGAAGCTCCATCTACCCATTCT +
Preference number: 4 (lower is better)
Translates to: NLMGQCTHTVVL*FWSLEAPSTHS
Trigger: AGAATGGGTAGATGGAGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAGGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp GAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGCTCGCTGGAAGTACTaGACAGCATCTTCTGAGTTT +
Preference number: 4 (lower is better)
Translates to: EFHCLQSGVKNICAMLFTARWKY*TASSEF
Trigger: AAACTCAGAAGATGCTGTTCAGTACTTCCAGCGAGC...AGTGAATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp ATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTTGCCTTTTTGTGCCTaGGTTTCACTGTCTGCAAAG +
Preference number: 4 (lower is better)
Translates to: ICLFVPEFHCLQSGVKNILPFCA*VSLSAK
Trigger: CTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAA...GATATTCTTAACCCCACTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp ATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCGAGCTAAGGGGAAAATaGTTAAATCCTGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: ICLFVPEFHCLQSGVKNIELRGK*LNPGTV
Trigger: CACAGTGCCAGGATTTAATCATTTTCCCCTTAGCTC...GATATTCTTAACCCCACTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTACTAATCTGAAGTCCTaGACTCTCTGTGGGGAAATA +
Preference number: 4 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEATNLKS*TLCGEI
Trigger: TATTTCCCCACAGAGAGTTCAGGACTTCAGATTAGT...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGAGCTTCATCCAGGCCTaGCTTGTTATCACTGCCATC +
Preference number: 4 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQSFIQA*LVITAI
Trigger: GATGGCAGTGATAACAAGGCAGGCCTGGATGAAGCT...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR GCA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTGAAGAAGTAGAGCTCTaGCTCTTCCTACAGTCTCTG +
Preference number: 4 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFEEVEL*LFLQSL
Trigger: CAGAGACTGTAGGAAGAGGCAGAGCTCTACTTCTTC...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGTCAAAACCACAGGTTTaGAGTACCGGGCATGGAGGT +
Preference number: 4 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQSKPQV*STGHGG
Trigger: ACCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGA...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAGCTTGTCACCTATaGTGCATGTTAAGAAGAGAG +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRKACHL*CMLRRE
Trigger: CTCTCTTCTTAACATGCAGCATAGGTGACAAGCTTT...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATATTTCTTTCTTGCTCTaGTGGTGCCAGGGCTCCTCT +
Preference number: 4 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYISFLL*WCQGSS
Trigger: AGAGGAGCCCTGGCACCAGCAGAGCAAGAAAGAAAT...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR GCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAGCTTATTCTGAACGGTaGATGCATTTCTTTCTTGCT +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRAYSER*MHFFLA
Trigger: AGCAAGAAAGAAATGCATGCACCGTTCAGAATAAGC...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR CCA 90 bp ATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCAGTTCCAAAGCAGTGTaGAAAGATGTCAAGGCACTG +
Preference number: 4 (lower is better)
Translates to: ICLFVPEFHCLQSGVKNISSKAV*KDVKAL
Trigger: CAGTGCCTTGACATCTTTCCACACTGCTTTGGAACT...GATATTCTTAACCCCACTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTTCATCCTCTGCAGGTTaGGGAAGGAACAGTTTGGAA +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVSSSAG*GRNSLE
Trigger: TTCCAAACTGTTCCTTCCCCAACCTGCAGAGGATGA...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAAAAATGATTAAATCCTaGCACTGTGTAGCCCAGCAA +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKKMIKS*HCVAQQ
Trigger: TTGCTGGGCTACACAGTGCCAGGATTTAATCATTTT...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
42% GC, longest homopolymer 8 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTGCTCCTGAAGGGCATTaGTGTCCAGATAGCATTTAT +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVAPEGH*CPDSIY
Trigger: ATAAATGCTATCTGGACATCAATGCCCTTCAGGAGC...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR TCA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGATCTAACCTTAAACATTaGGCCAAATTATGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRSNLKH*AKLWQR
Trigger: TCTCTGCCATAATTTGGCTCAATGTTTAAGGTTAGA...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTGGCTCCCTGACAAACTaGAGTCAAGTAGGCATAATA +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVGSLTN*SQVGII
Trigger: TATTATGCCTACTTGACTGCAGTTTGTCAGGGAGCC...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTGGTGGTCAGGAGATCTaGTTTCTATTCATTGCTCTG +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVGGQEI*FLFIAL
Trigger: CAGAGCAATGAATAGAAAGCAGATCTCCTGACCACC...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGTGCTATGTTATTCACTAGTTCCAAAGCAGTGTaGAAAGATGTCAAGGCACTG +
Preference number: 4 (lower is better)
Translates to: EFHCLQSGVKNICAMLFTSSKAV*KDVKAL
Trigger: CAGTGCCTTGACATCTTTCCACACTGCTTTGGAACT...AGTGAATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTAACACACAGAGCGCTTTaGTTGGGGTTTGCTTCCGAA +
Preference number: 4 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLTHRAL*LGFASE
Trigger: TTCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGT...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAATACAGGATCTTGGGTTaGATGTTCCGTTTGATTTTA +
Preference number: 4 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKYRILG*MFRLIL
Trigger: TAAAATCAAACGGAACATCCAACCCAAGATCCTGTA...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAAATTAGCCAGGCACGGTaGCAGGAACTTGTAATCCCA +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKISQAR*QELVIP
Trigger: TGGGATTACAAGTTCCTGCCACCGTGCCTGGCTAAT...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAATTTGAGAGGACAAGGTaGGTGGATCATGAGGTCAGG +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKFERTR*VDHEVR
Trigger: CCTGACCTCATGATCCACCCACCTTGTCCTCTCAAA...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGAATCAGTTCACAGGTTaGATAAGTCACGGCACGCAG +
Preference number: 4 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQNQFTG*ISHGTQ
Trigger: CTGCGTGCCGTGACTTATCCAACCTGTGAACTGATT...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATATGATTATCTGCCTCTaGAGCCGATCAACCATAGAG +
Preference number: 4 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYMIICL*SRSTIE
Trigger: CTCTATGGTTGATCGGCTTCAGAGGCAGATAATCAT...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR TCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTATGTCAAGGCACTGTTaGTTTGACACTCTAGTCGTT +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVMSRHC*FDTLVV
Trigger: AACGACTAGAGTGTCAAATCAACAGTGCCTTGACAT...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR TCA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTAGCTCGCTGGAAGTACTaGACAGCATCTTCTGAGTTT +
Preference number: 4 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLARWKY*TASSEF
Trigger: AAACTCAGAAGATGCTGTTCAGTACTTCCAGCGAGC...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGGAGCTAAGGGGAAAATaGTTAAATCCTGGCACTGTG +
Preference number: 4 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQELRGK*LNPGTV
Trigger: CACAGTGCCAGGATTTAATCATTTTCCCCTTAGCTC...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp CATCAGCAAAGGGTTAAGAGCAGTTTACACCAAACCAAGTTACCAAGCAGATCATGGGATAAGTCAATTTaGCTTTTTGTGCCTGAGTTT +
Preference number: 4 (lower is better)
Translates to: HQQRVKSSLHQTKLPSRSWDKSI*LFVPEF
Trigger: AAACTCAGGCACAAAAAGGCAAATTGACTTATCCCA...TGATCTGCTTGGTAACTTGGTTTGGTGTAAACTGCTCTTAACCCTTTGCTGATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAATCATCCTCTGCAGGTTaGGGAAGGAACAGTTTGGAA +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKSSSAG*GRNSLE
Trigger: TTCCAAACTGTTCCTTCCCCAACCTGCAGAGGATGA...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAAGGGAAAATGTGTCCCTaGCACAGGTGGTTTTCAGAA +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKGKMCP*HRWFSE
Trigger: TTCTGAAAACCACCTGTGCCAGGGACACATTTTCCC...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTAACCCTCTCCCCAGGTaGTTAGTTATTATTACCATC +
Preference number: 4 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFNPLPR*LVIITI
Trigger: GATGGTAATAATAACTAACCACCTGGGGAGAGGGTT...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GATTCTTCAAAACCACAGGTTTGCAGTACCGGGCATGGAGGTAAATTAAATGACTACAGGATCTTGGGTTaGATGTTCCGTTTGATTTTA +
Preference number: 4 (lower is better)
Translates to: DSSKPQVCSTGHGGKLNDYRILG*MFRLIL
Trigger: TAAAATCAAACGGAACATCCAACCCAAGATCCTGTA...GTCATTTAATTTACCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAAGAATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp ATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCAGTGTACTCACACTGTaGTTTTGTTGTTTTGGAGTC +
Preference number: 4 (lower is better)
Translates to: ICLFVPEFHCLQSGVKNISVLTL*FCCFGV
Trigger: GACTCCAAAACAACAAAACCACAGTGTGAGTACACT...GATATTCTTAACCCCACTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAAAAATCCTCCTTTGCTTaGAGAAGTAGAGCTCTGCCT +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKKSSFA*RSRALP
Trigger: AGGCAGAGCTCTACTTCTTCAAGCAAAGGAGGATTT...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
39% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTGTCTATCCAGTTAAGTaGGCTGAACACAAACTAATC +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVVYPVK*AEHKLI
Trigger: GATTAGTTTGTGTTCAGCTCACTTAACTGGATAGAC...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTGCTTGTCACCTATGCTaGATGTTAAGAAGAGAGAAA +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVACHLC*MLRREK
Trigger: TTTCTCTCTTCTTAACATGCAGCATAGGTGACAAGC...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAAGGTTTGGGGGCACCATaGATATGCAAAGGTGAAAAA +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKGLGAP*ICKGEK
Trigger: TTTTTCACCTTTGCATATCCATGGTGCCCCCAAACC...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTATAAAAGTCAGTTGGTaGTCAGGAGATCTGCTTTCT +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVIKVSW*SGDLLS
Trigger: AGAAAGCAGATCTCCTGACCACCAACTGACTTTTAT...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGTCTACCCATTCTCCATaGTCTACCACCATGTTAACA +
Preference number: 4 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQSTHSP*STTMLT
Trigger: TGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
3UTR CAA 72 bp TGGTTGGCTTTCAAAGGAAAAAGAGTGTCCATCGCTTaGAAACATTCTGTAGACAATCTGGAGATGACTATT +
Preference number: 4 (lower is better)
Translates to: WLAFKGKRVSIA*KHSVDNLEMTI
Trigger: AATAGTCATCTCCAGATTGTCTACAGAATGTTTCAAAGCGATGGACACTCTTTTTCCTTTGAAAGCCAACCA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTTTCACAAAAGAAGCTTaGGATTTCTTAGGAGCAAGA +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVFTKEA*DFLGAR
Trigger: TCTTGCTCCTAAGAAATCTCAAGCTTCTTTTGTGAA...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000304621.10
CDS-3UTR TCA 90 bp GAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGTGCTATGTTATTCACTTCTAACCTTAAACATTaGGCCAAATTATGGCAGAGA +
Preference number: 4 (lower is better)
Translates to: EFHCLQSGVKNICAMLFTSNLKH*AKLWQR
Trigger: TCTCTGCCATAATTTGGCTCAATGTTTAAGGTTAGA...AGTGAATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAAACTAATCTGAAGTCCTaGACTCTCTGTGGGGAAATA +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKTNLKS*TLCGEI
Trigger: TATTTCCCCACAGAGAGTTCAGGACTTCAGATTAGT...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGCTGAGTTTCACTGTCTaGAAAGTGGGGTTAAGAATA +
Preference number: 4 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQLSFTV*KVGLRI
Trigger: TATTCTTAACCCCACTTTGCAGACAGTGAAACTCAG...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTTGTCATGATTCAGAATaGTCCATGATGATGACAGAA +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVCHDSE*SMMMTE
Trigger: TTCTGTCATCATCATGGAGCATTCTGAATCATGACA...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAAAACCCTCTCCCCAGGTaGTTAGTTATTATTACCATC +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKNPLPR*LVIITI
Trigger: GATGGTAATAATAACTAACCACCTGGGGAGAGGGTT...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTTACAGGATCTTGGGTTaGATGTTCCGTTTGATTTTA +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVYRILG*MFRLIL
Trigger: TAAAATCAAACGGAACATCCAACCCAAGATCCTGTA...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTATAAATTCAGAATCCTaGCTCTGTTGTAGCAAAACT +
Preference number: 4 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVINSES*LCCSKT
Trigger: AGTTTTGCTACAACAGAGGCAGGATTCTGAATTTAT...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000304621.10
CDS-3UTR GCA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTAAAAGCTTGTCACCTATaGTGCATGTTAAGAAGAGAG +
Preference number: 4 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLKACHL*CMLRRE
Trigger: CTCTCTTCTTAACATGCAGCATAGGTGACAAGCTTT...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR TCA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAACACCAGCAAATATTTTaGGGCCAAAATCTATGTTCA +
Preference number: 4 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKHQQIF*GQNLCS
Trigger: TGAACATAGATTTTGGCCTCAAAATATTTGCTGGTG...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTATGGGATAAGTCAATTTaGCTTTTTGTGCCTGAGTTT +
Preference number: 4 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLWDKSI*LFVPEF
Trigger: AAACTCAGGCACAAAAAGGCAAATTGACTTATCCCA...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR GCA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTACTGCTTTCTATTCATTaGTCTGCTGATAACAGGAAT +
Preference number: 4 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLLLSIH*SADNRN
Trigger: ATTCCTGTTATCAGCAGAGCAATGAATAGAAAGCAG...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS GCA 90 bp GTGCGAGGCCCTGCGCTGGGCCGAGGCGAGATCGGGAGCAGCTGCTaGGGCCCCGCGCGCGCCCGGAGCCCGGCTCTACCTGCCCGGAGC +
Preference number: 5 (lower is better)
Translates to: VRGPALGRGEIGSSC*GPARARSPALPARS
Trigger: GCTCCGGGCAGGTAGAGCCGGGCTCCGGGCGCGCGCGGGGCCGCAGCAGCTGCTCCCGATCTCGCCTCGGCCCAGCGCAGGGCCTCGCAC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000584250.1
CDS GCA 90 bp GCTGCCGCGTCCGAGTCTCCGTCGTCCCGCCGCCGCGGCCGCTGCTaGTCCGAGCCGGCCATGGGCGTGCGAGGCCCTGCGCTGGGCCGA +
Preference number: 5 (lower is better)
Translates to: AAASESPSSRRRGRC*SEPAMGVRGPALGR
Trigger: TCGGCCCAGCGCAGGGCCTCGCACGCCCATGGCCGGCTCGGAGCAGCAGCGGCCGCGGCGGCGGGACGACGGAGACTCGGACGCGGCAGC
80% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000584250.1
CDS CCA 90 bp GCCGCTGCTGCTCCGAGCCGGCCATGGGCGTGCGAGGCCCTGCGCTaGGCCGAGGCGAGATCGGGAGCAGCTGCTGCGGCCCCGCGCGCG +
Preference number: 5 (lower is better)
Translates to: AAAAPSRPWACEALR*AEARSGAAAAAPRA
Trigger: CGCGCGCGGGGCCGCAGCAGCTGCTCCCGATCTCGCCTCGGCCCAGCGCAGGGCCTCGCACGCCCATGGCCGGCTCGGAGCAGCAGCGGC
80% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000584250.1
CDS CCA 90 bp TGCTGGTGCCAGGGCTCCTCTCACTGCCCTACACTTGCAGGGAGGTaGACTTCCCTCCCCTGGGCTTCCAGGTGCGTCTCCTGCTGCTTT +
Preference number: 5 (lower is better)
Translates to: CWCQGSSHCPTLAGR*TSLPWASRCVSCCF
Trigger: AAAGCAGCAGGAGACGCACCTGGAAGCCCAGGGGAGGGAAGTCCACCTCCCTGCAAGTGTAGGGCAGTGAGAGGAGCCCTGGCACCAGCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS GCA 90 bp TTTCTTGCTCTGCTGGTGCCAGGGCTCCTCTCACTGCCCTACACTTaGAGGGAGGTGGACTTCCCTCCCCTGGGCTTCCAGGTGCGTCTC +
Preference number: 5 (lower is better)
Translates to: FLALLVPGLLSLPYT*REVDFPPLGFQVRL
Trigger: GAGACGCACCTGGAAGCCCAGGGGAGGGAAGTCCACCTCCCTGCAAGTGTAGGGCAGTGAGAGGAGCCCTGGCACCAGCAGAGCAAGAAA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS GCA 90 bp GCATGCATTTCTTTCTTGCTCTGCTGGTGCCAGGGCTCCTCTCACTaGCCTACACTTGCAGGGAGGTGGACTTCCCTCCCCTGGGCTTCC +
Preference number: 5 (lower is better)
Translates to: ACISFLLCWCQGSSH*PTLAGRWTSLPWAS
Trigger: GGAAGCCCAGGGGAGGGAAGTCCACCTCCCTGCAAGTGTAGGGCAGTGAGAGGAGCCCTGGCACCAGCAGAGCAAGAAAGAAATGCATGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS CCA 90 bp TCCTCTCACTGCCCTACACTTGCAGGGAGGTGGACTTCCCTCCCCTaGGCTTCCAGGTGCGTCTCCTGCTGCTTTCTCTATGCTTCCTCC +
Preference number: 5 (lower is better)
Translates to: SSHCPTLAGRWTSLP*ASRCVSCCFLYASS
Trigger: GGAGGAAGCATAGAGAAAGCAGCAGGAGACGCACCTGGAAGCCCAGGGGAGGGAAGTCCACCTCCCTGCAAGTGTAGGGCAGTGAGAGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR CAA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTCGCTTTGGTTGGGGTTaGCTTCCGAAATCGCTCTGC +
Preference number: 5 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSRFGWG*LPKSLC
Trigger: GCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGCG...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTCACAGAGCGCTTTGGTaGGGGTTTGCTTCCGAAATC +
Preference number: 5 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSHRALW*GFASEI
Trigger: GATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGTG...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTAACACACAGAGCGCTTaGGTTGGGGTTTGCTTCCGA +
Preference number: 5 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSNTQSA*VGVCFR
Trigger: TCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGTT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTCACTTCATGGCAAGCTaGACTCATCCTCTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSHFMAS*THPLQV
Trigger: AACCTGCAGAGGATGAGTCAAGCTTGCCATGAAGTG...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTTGTTCCTACAGGATCTaGGGTTGGATGTTCCGTTTG +
Preference number: 5 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSCSYRI*GWMFRL
Trigger: CAAACGGAACATCCAACCCAAGATCCTGTAGGAACA...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS GCA 90 bp CAGCTTATTCTGAACGGTGCATGCATTTCTTTCTTGCTCTGCTGGTaGCAGGGCTCCTCTCACTGCCCTACACTTGCAGGGAGGTGGACT +
Preference number: 5 (lower is better)
Translates to: QLILNGACISFLLCW*QGSSHCPTLAGRWT
Trigger: AGTCCACCTCCCTGCAAGTGTAGGGCAGTGAGAGGAGCCCTGGCACCAGCAGAGCAAGAAAGAAATGCATGCACCGTTCAGAATAAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR CAA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAATTGTTGAGCAGCATGTaGATGCCGGCCAGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQLLSSM*MPARAS
Trigger: GCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAA...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CAA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTTGTCCTTACTTTCGCTaGCATACATCAGTGAAGAAA +
Preference number: 5 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSCPYFR*HTSVKK
Trigger: TTTCTTCACTGATGTATGCAAGCGAAAGTAAGGACA...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR CAA 90 bp AGTCAACAGATGAGTTTCCTGTCTTTCCCGCCAGTTCCCTTAAACCATTTCTGCTTGTTGAGCAGCATGTaGATGCCGGCCAGGGCCAGC +
Preference number: 5 (lower is better)
Translates to: SQQMSFLSFPPVPLNHFCLLSSM*MPARAS
Trigger: GCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAA...GCAGAAATGGTTTAAGGGAACTGGCGGGAAAGACAGGAAACTCATCTGTTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR CAA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTCCCTGAAGCCGTTGTaGAGCAGCATGTTGATGCCG +
Preference number: 5 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDSLKPL*SSMLMP
Trigger: CGGCATCAACATGCTGCTCAACAACGGCTTCAGGGA...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CAA 90 bp TCCTCCCAAGAATCTGACATGGTTTTAGGCAGAGAAGAGGCTCAGAGGCCTGCTGACTCCCTGAAGCCGTaGTTGAGCAGCATGTTGATG +
Preference number: 5 (lower is better)
Translates to: SSQESDMVLGREEAQRPADSLKP*LSSMLM
Trigger: CATCAACATGCTGCTCAACAACGGCTTCAGGGAGTC...AGCAGGCCTCTGAGCCTCTTCTCTGCCTAAAACCATGTCAGATTCTTGGGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR CAA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTCCACCAGCAAATATTTaGAGGCCAAAATCTATGTTC +
Preference number: 5 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSPPANI*RPKSMF
Trigger: GAACATAGATTTTGGCCTCAAAATATTTGCTGGTGG...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TATTTTAAAGTGCGGACCCTGGGTGGGGAGGGACGGAGCGGGTGTTCCGGGTCTACTCACACTGTGGTTTaGTTGTTTTGGAGTCTAGAA +
Preference number: 5 (lower is better)
Translates to: YFKVRTLGGEGRSGCSGSTHTVV*LFWSLE
Trigger: TTCTAGACTCCAAAACAACAAAACCACAGTGTGAGT...AGACCCGGAACACCCGCTCCGTCCCTCCCCACCCAGGGTCCGCACTTTAAAATA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATCCCTGAAGCCGTTGTaGAGCAGCATGTTGATGCCG +
Preference number: 5 (lower is better)
Translates to: SRNHGQPASPSSPPKNLTSLKPL*SSMLMP
Trigger: CGGCATCAACATGCTGCTCAACAACGGCTTCAGGGA...TGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR CAA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACGACTCCCTGAAGCCGTaGTTGAGCAGCATGTTGATG +
Preference number: 5 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDDSLKP*LSSMLM
Trigger: CATCAACATGCTGCTCAACAACGGCTTCAGGGAGTC...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CAA 90 bp ACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTTTAGGCAGAGGCATCTCTCTGCTGTaGCTGGGAGAGAGTTTTCCA +
Preference number: 5 (lower is better)
Translates to: TACKSFQSSQESDMVLGRGISLL*LGESFP
Trigger: TGGAAAACTCTCTCCCAGCAACAGCAGAGAGATGCC...TCTGCCTAAAACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000577185.1
CDS CCA 90 bp CAAGTACAACACTTCAATAGACGCCAACACACAGAGCGCTTTGGTTaGGGTTTGCTTCCGAAATCGCTCTGCCTTTTTCACCGAGAACTG +
Preference number: 5 (lower is better)
Translates to: QVQHFNRRQHTERFG*GLLPKSLCLFHREL
Trigger: CAGTTCTCGGTGAAAAAGGCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGTTGGCGTCTATTGAAGTGTTGTACTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
ENST00000584095.1
ENST00000584424.1
CDS GCA 90 bp ATAAATCTTAAACAGCCAGACGACCTGACAGCTTATTCTGAACGGTaGATGCATTTCTTTCTTGCTCTGCTGGTGCCAGGGCTCCTCTCA +
Preference number: 5 (lower is better)
Translates to: INLKQPDDLTAYSER*MHFFLALLVPGLLS
Trigger: TGAGAGGAGCCCTGGCACCAGCAGAGCAAGAAAGAAATGCATGCACCGTTCAGAATAAGCTGTCAGGTCGTCTGGCTGTTTAAGATTTAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS-3UTR CAA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAAGCAGGTTGATGATTTaGAGCAGGTTTGGGGGCACC +
Preference number: 5 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKSRLMI*SRFGGT
Trigger: GGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCT...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR CAA 90 bp TCAGTTCACAGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACGGAAAACCCAGCAGGTaGATGATTTTGAGCAGGTTT +
Preference number: 5 (lower is better)
Translates to: SVHRLDKSRHAGQKMYSDGKPSR*MILSRF
Trigger: AAACCTGCTCAAAATCATCAACCTGCTGGGTTTTCC...GTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCTGTGAACTGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CAA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCTGGGGAAGGAACAGTTaGGAAGAGCTTTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRWGRNS*EELSTS
Trigger: ACTTGTGGAAAGCTCTTCCAAACTGTTCCTTCCCCA...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGACTCATCCTCTGCAGGTaGGGGAAGGAACAGTTTGGA +
Preference number: 5 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRLILCR*GKEQFG
Trigger: TCCAAACTGTTCCTTCCCCAACCTGCAGAGGATGAG...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAACTCATCCTCTGCAGGTaGGGGAAGGAACAGTTTGGA +
Preference number: 5 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKLILCR*GKEQFG
Trigger: TCCAAACTGTTCCTTCCCCAACCTGCAGAGGATGAG...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACATGGTTTTACACAGAGAAGTATCTTaGAAGGGGCATCTCTCTGCT +
Preference number: 5 (lower is better)
Translates to: SWTACKSFQSSQESDMVLHREVS*KGHLSA
Trigger: AGCAGAGAGATGCCCCTTCAAAGATACTTCTCTGTG...TAAAACCATGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000577185.1
CDS-3UTR CAA 90 bp GATTCTTCAAAACCACAGGTTTGCAGTACCGGGCATGGAGGTAAATTAAATGACCACAGAGCGCTTTGGTaGGGGTTTGCTTCCGAAATC +
Preference number: 5 (lower is better)
Translates to: DSSKPQVCSTGHGGKLNDHRALW*GFASEI
Trigger: GATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGTG...GTCATTTAATTTACCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAAGAATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTAACACACAGAGCGCTTaGGTTGGGGTTTGCTTCCGA +
Preference number: 5 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEANTQSA*VGVCFR
Trigger: TCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGTT...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCCCTACAGTCTCTGGTTaGTCTAATAGAAGACAGCCA +
Preference number: 5 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRPTVSG*SNRRQP
Trigger: TGGCTGTCTTCTATTAGACAAACCAGAGACTGTAGG...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS TCA 90 bp TTCAGTCTGTTCAGAGACTCCTCAGACACCCCTTCAGCCACAATGTaGTTATCATTTGCAGCATCAGAAGTCAAGGACTCTTCAGTTAGC +
Preference number: 5 (lower is better)
Translates to: FSLFRDSSDTPSATM*LSFAASEVKDSSVS
Trigger: GCTAACTGAAGAGTCCTTGACTTCTGATGCTGCAAATGATAATCACATTGTGGCTGAAGGGGTGTCTGAGGAGTCTCTGAACAGACTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000578150.1
CDS-3UTR CAA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCCGTTGTATCCGTCCCTaGAAAAACATAAAGAGGGAA +
Preference number: 5 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRRCIRP*KNIKRE
Trigger: TTCCCTCTTTATGTTTTTCAAGGGACGGATACAACG...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CAA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTCGCTTTGGTTGGGGTTaGCTTCCGAAATCGCTCTGC +
Preference number: 5 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVRFGWG*LPKSLC
Trigger: GCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGCG...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAATGGGGAAGGAACAGTTaGGAAGAGCTTTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKWGRNS*EELSTS
Trigger: ACTTGTGGAAAGCTCTTCCAAACTGTTCCTTCCCCA...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGACTACAGGATCTTGGGTaGGATGTTCCGTTTGATTTT +
Preference number: 5 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGLQDLG*DVPFDF
Trigger: AAAATCAAACGGAACATCCAACCCAAGATCCTGTAG...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGATGTTCCTACAGGATCTaGGGTTGGATGTTCCGTTTG +
Preference number: 5 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRCSYRI*GWMFRL
Trigger: CAAACGGAACATCCAACCCAAGATCCTGTAGGAACA...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TCTACCCATTCTCCATGGTCTACCACCATGTTAACACAGATTTACCACAGGCGCAGTCAATTTGCCTTTTaGTGCCTGAGTTTCACTGTC +
Preference number: 5 (lower is better)
Translates to: STHSPWSTTMLTQIYHRRSQFAF*CLSFTV
Trigger: GACAGTGAAACTCAGGCACAAAAAGGCAAATTGACT...GCGCCTGTGGTAAATCTGTGTTAACATGGTGGTAGACCATGGAGAATGGGTAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TACCACCATGTTAACACAGATTTACCACAGGCGCCATCTGTACCAAGCCTAGGACACACTGTGGTTTTGTaGTTTTGGAGTCTAGAAGCT +
Preference number: 5 (lower is better)
Translates to: YHHVNTDLPQAPSVPSLGHTVVL*FWSLEA
Trigger: AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTG...TCCTAGGCTTGGTACAGATGGCGCCTGTGGTAAATCTGTGTTAACATGGTGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp AGGTTGGATAAGTCACGGCACGCAGGCCAGAAAATGTACTCAGACTTCAGTCAACACACTGTGGTTTTGTaGTTTTGGAGTCTAGAAGCT +
Preference number: 5 (lower is better)
Translates to: RLDKSRHAGQKMYSDFSQHTVVL*FWSLEA
Trigger: AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTG...TTGACTGAAGTCTGAGTACATTTTCTGGCCTGCGTGCCGTGACTTATCCAACCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CTAATGGGACAGTGTACTCACACTGTGGTTTTGTTGTTTTGGAGTCTAGAAGCTCAATCAGTTCACAGGTaGGATAAGTCACGGCACGCA +
Preference number: 5 (lower is better)
Translates to: LMGQCTHTVVLLFWSLEAQSVHR*DKSRHA
Trigger: TGCGTGCCGTGACTTATCCAACCTGTGAACTGATTG...AGCTTCTAGACTCCAAAACAACAAAACCACAGTGTGAGTACACTGTCCCATTAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TCTAGAAATCATGGACAGCCTGCAAGTCCTTCCAGTCCTCCCAAGAATCTGACACTTTTTCTGTATTGTTaGAAAAGCTGGTCCGACTCC +
Preference number: 5 (lower is better)
Translates to: SRNHGQPASPSSPPKNLTLFLYC*KSWSDS
Trigger: GGAGTCGGACCAGCTTTTCAAACAATACAGAAAAAG...TGTCAGATTCTTGGGAGGACTGGAAGGACTTGCAGGCTGTCCATGATTTCTAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS-3UTR CAA 90 bp GAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGTGCTATGTTATTCACTAGCAGGTTGATGATTTaGAGCAGGTTTGGGGGCACC +
Preference number: 5 (lower is better)
Translates to: EFHCLQSGVKNICAMLFTSRLMI*SRFGGT
Trigger: GGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCT...AGTGAATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CAA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAGGAAAACCCAGCAGGTaGATGATTTTGAGCAGGTTT +
Preference number: 5 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRGKPSR*MILSRF
Trigger: AAACCTGCTCAAAATCATCAACCTGCTGGGTTTTCC...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR CAA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGCGCTTTGGTTGGGGTTaGCTTCCGAAATCGCTCTGC +
Preference number: 5 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQRFGWG*LPKSLC
Trigger: GCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGCG...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAACCTACAGTCTCTGGTTaGTCTAATAGAAGACAGCCA +
Preference number: 5 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKPTVSG*SNRRQP
Trigger: TGGCTGTCTTCTATTAGACAAACCAGAGACTGTAGG...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGACAGAGAAATCCTCCTTaGCTTGAAGAAGTAGAGCTC +
Preference number: 5 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRQRNPP*LEEVEL
Trigger: GAGCTCTACTTCTTCAAGCAAAGGAGGATTTCTCTG...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTTTCAAAACCACAGGTTaGCAGTACCGGGCATGGAGG +
Preference number: 5 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFFKTTG*QYRAWR
Trigger: CCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAA...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAAAAAATGCATCCTTGAAATaGAGCTCTATCATGCTGCAC +
Preference number: 5 (lower is better)
Translates to: CQLNWENVSLAQVVFRRKNASLK*SSIMLH
Trigger: GTGCAGCATGATAGAGCTCAATTTCAAGGATGCATT...TTTTCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACA
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATCACAGAGCGCTTTGGTaGGGGTTTGCTTCCGAAATC +
Preference number: 5 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYHRALW*GFASEI
Trigger: GATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGTG...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGCTCATCCTCTGCAGGTaGGGGAAGGAACAGTTTGGA +
Preference number: 5 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQLILCR*GKEQFG
Trigger: TCCAAACTGTTCCTTCCCCAACCTGCAGAGGATGAG...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTCACTTCATGGCAAGCTaGACTCATCCTCTGCAGGTT +
Preference number: 5 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFHFMAS*THPLQV
Trigger: AACCTGCAGAGGATGAGTCAAGCTTGCCATGAAGTG...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp GATTCTTCAAAACCACAGGTTTGCAGTACCGGGCATGGAGGTAAATTAAATGACCAGAGAAATCCTCCTTaGCTTGAAGAAGTAGAGCTC +
Preference number: 5 (lower is better)
Translates to: DSSKPQVCSTGHGGKLNDQRNPP*LEEVEL
Trigger: GAGCTCTACTTCTTCAAGCAAAGGAGGATTTCTCTG...GTCATTTAATTTACCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAAGAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGACTACAGGATCTTGGGTaGGATGTTCCGTTTGATTTT +
Preference number: 5 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRLQDLG*DVPFDF
Trigger: AAAATCAAACGGAACATCCAACCCAAGATCCTGTAG...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTTGTTCCTACAGGATCTaGGGTTGGATGTTCCGTTTG +
Preference number: 5 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVCSYRI*GWMFRL
Trigger: CAAACGGAACATCCAACCCAAGATCCTGTAGGAACA...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp ATATGTCAGCTTAACTGGGAAAATGTGTCCCTGGCACAGGTGGTTTTCAGAAGAGCTATGATTTCTGTATaGTTTGAAAAGCTGGTCCGA +
Preference number: 5 (lower is better)
Translates to: ICQLNWENVSLAQVVFRRAMISV*FEKLVR
Trigger: TCGGACCAGCTTTTCAAACAATACAGAAATCATAGC...TCTTCTGAAAACCACCTGTGCCAGGGACACATTTTCCCAGTTAAGCTGACATAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000317571.8
CDS-3UTR CAA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTATTCAAAACCACAGGTTaGCAGTACCGGGCATGGAGG +
Preference number: 5 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLFKTTG*QYRAWR
Trigger: CCTCCATGCCCGGTACTGCAAACCTGTGGTTTTGAA...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS TCA 90 bp ATGAGAATCAGAGAGAAGTATCATTGCATGTGCTACGGGAATAACTaGAGTCCTTCTTACTACAGAAGGCACCAAGCATTTTGTAGACAC +
Preference number: 5 (lower is better)
Translates to: MRIREKYHCMCYGNN*SPSYYRRHQAFCRH
Trigger: GTGTCTACAAAATGCTTGGTGCCTTCTGTAGTAAGAAGGACTTCAGTTATTCCCGTAGCACATGCAATGATACTTCTCTCTGATTCTCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000581394.1
CDS-3UTR CAA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGTGGGGAAGGAACAGTTaGGAAGAGCTTTCCACAAGT +
Preference number: 5 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQWGRNS*EELSTS
Trigger: ACTTGTGGAAAGCTCTTCCAAACTGTTCCTTCCCCA...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTACAATCAGTTCACAGGTaGGATAAGTCACGGCACGCA +
Preference number: 5 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLQSVHR*DKSRHA
Trigger: TGCGTGCCGTGACTTATCCAACCTGTGAACTGATTG...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTCGTTGTATCCGTCCCTaGAAAAACATAAAGAGGGAA +
Preference number: 5 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVRCIRP*KNIKRE
Trigger: TTCCCTCTTTATGTTTTTCAAGGGACGGATACAACG...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS-3UTR CAA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTAATGCATCCTTGAAATaGAGCTCTATCATGCTGCAC +
Preference number: 5 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVNASLK*SSIMLH
Trigger: GTGCAGCATGATAGAGCTCAATTTCAAGGATGCATT...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp GAGAAAGTCAATGTGAATACACATTTTGGAAACAGTCTACTGAAAAGTGGTCAGCCTACAGTCTCTGGTTaGTCTAATAGAAGACAGCCA +
Preference number: 5 (lower is better)
Translates to: EKVNVNTHFGNSLLKSGQPTVSG*SNRRQP
Trigger: TGGCTGTCTTCTATTAGACAAACCAGAGACTGTAGG...CTGACCACTTTTCAGTAGACTGTTTCCAAAATGTGTATTCACATTGACTTTCTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp ATTTGCCTTTTTGTGCCTGAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCAGAGTGTCCATCGCTTaGAAACATTCTGTAGACAAT +
Preference number: 5 (lower is better)
Translates to: ICLFVPEFHCLQSGVKNIRVSIA*KHSVDN
Trigger: ATTGTCTACAGAATGTTTCAAAGCGATGGACACTCT...GATATTCTTAACCCCACTTTGCAGACAGTGAAACTCAGGCACAAAAAGGCAAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CATCAGCAAAGGGTTAAGAGCAGTTTACACCAAACCAAGTTACCAAGCAGATCAAGATGTCCAATATTTTaGGGCACCAATTTTGCTCTT +
Preference number: 5 (lower is better)
Translates to: HQQRVKSSLHQTKLPSRSRCPIF*GTNFAL
Trigger: AAGAGCAAAATTGGTGCCCAAAAATATTGGACATCT...TGATCTGCTTGGTAACTTGGTTTGGTGTAAACTGCTCTTAACCCTTTGCTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CATCAGCAAAGGGTTAAGAGCAGTTTACACCAAACCAAGTTACCAAGCAGATCATTGCAAAACGCAAAATaGTCTATCCAGTTAAGTGAG +
Preference number: 5 (lower is better)
Translates to: HQQRVKSSLHQTKLPSRSLQNAK*SIQLSE
Trigger: CTCACTTAACTGGATAGACAATTTTGCGTTTTGCAA...TGATCTGCTTGGTAACTTGGTTTGGTGTAAACTGCTCTTAACCCTTTGCTGATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp TTTACAGGTACCTCATCATGTTACCCATTCAGATATGTGCTTAAGGTAGGTGTTACCTACAGGATGGTGTaGCAAAACGCAAAATTGTCT +
Preference number: 5 (lower is better)
Translates to: FTGTSSCYPFRYVLKVGVTYRMV*QNAKLS
Trigger: AGACAATTTTGCGTTTTGCAACACCATCCTGTAGGT...AACACCTACCTTAAGCACATATCTGAATGGGTAACATGATGAGGTACCTGTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp GAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGTGCTATGTTATTCACTACCTACAGGATGGTGTaGCAAAACGCAAAATTGTCT +
Preference number: 5 (lower is better)
Translates to: EFHCLQSGVKNICAMLFTTYRMV*QNAKLS
Trigger: AGACAATTTTGCGTTTTGCAACACCATCCTGTAGGT...AGTGAATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTACAGAGAAATCCTCCTTaGCTTGAAGAAGTAGAGCTC +
Preference number: 5 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLQRNPP*LEEVEL
Trigger: GAGCTCTACTTCTTCAAGCAAAGGAGGATTTCTCTG...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp GAGTTTCACTGTCTGCAAAGTGGGGTTAAGAATATCTGTGCTATGTTATTCACTACTCACACTGTGGTTTaGTTGTTTTGGAGTCTAGAA +
Preference number: 5 (lower is better)
Translates to: EFHCLQSGVKNICAMLFTTHTVV*LFWSLE
Trigger: TTCTAGACTCCAAAACAACAAAACCACAGTGTGAGT...AGTGAATAACATAGCACAGATATTCTTAACCCCACTTTGCAGACAGTGAAACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTAAGTCAATTTGCCTTTTaGTGCCTGAGTTTCACTGTC +
Preference number: 5 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLSQFAF*CLSFTV
Trigger: GACAGTGAAACTCAGGCACAAAAAGGCAAATTGACT...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp AAGTTCCCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATAGAGTGTCCATCGCTTaGAAACATTCTGTAGACAAT +
Preference number: 5 (lower is better)
Translates to: KFPSHSLNIGEQSLLSYYRVSIA*KHSVDN
Trigger: ATTGTCTACAGAATGTTTCAAAGCGATGGACACTCT...ATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGGGAACTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CTAAAACCCACACGGAATTCACATCAGGGAGAAAGTCAATGTGAATACACATTTTTGCAAAACGCAAAATaGTCTATCCAGTTAAGTGAG +
Preference number: 5 (lower is better)
Translates to: LKPTRNSHQGESQCEYTFLQNAK*SIQLSE
Trigger: CTCACTTAACTGGATAGACAATTTTGCGTTTTGCAA...AAATGTGTATTCACATTGACTTTCTCCCTGATGTGAATTCCGTGTGGGTTTTAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp CCTTCTCATTCACTGAATATAGGAGAGCAATCTCTTCTCTCTTACTATTATCTACCACCAGCAAATATTTaGAGGCCAAAATCTATGTTC +
Preference number: 5 (lower is better)
Translates to: PSHSLNIGEQSLLSYYYLPPANI*RPKSMF
Trigger: GAACATAGATTTTGGCCTCAAAATATTTGCTGGTGG...TAGATAATAGTAAGAGAGAAGAGATTGCTCTCCTATATTCAGTGAATGAGAAGG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS-3UTR CAA 90 bp GTGGGGTTAAGAATATCTGTGCTATGTTATTCACTGGAGTATTTTGAGGATAAAAGATGTCCAATATTTTaGGGCACCAATTTTGCTCTT +
Preference number: 5 (lower is better)
Translates to: VGLRISVLCYSLEYFEDKRCPIF*GTNFAL
Trigger: AAGAGCAAAATTGGTGCCCAAAAATATTGGACATCT...TTTATCCTCAAAATACTCCAGTGAATAACATAGCACAGATATTCTTAACCCCAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000540918.2
CDS GCA 72 bp GCGTCCGAGTCTCCGTCGTCCCGCCGCCGCGGCCGCTaGTGCTCCGAGCCGGCCATGGGCGTGCGAGGCCCT +
Preference number: 6 (lower is better)
Translates to: ASESPSSRRRGR*CSEPAMGVRGP
Trigger: AGGGCCTCGCACGCCCATGGCCGGCTCGGAGCAGCAGCGGCCGCGGCGGCGGGACGACGGAGACTCGGACGC
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000584250.1
CDS CCA 72 bp GCTCCGAGCCGGCCATGGGCGTGCGAGGCCCTGCGCTaGGCCGAGGCGAGATCGGGAGCAGCTGCTGCGGCC +
Preference number: 6 (lower is better)
Translates to: APSRPWACEALR*AEARSGAAAAA
Trigger: GGCCGCAGCAGCTGCTCCCGATCTCGCCTCGGCCCAGCGCAGGGCCTCGCACGCCCATGGCCGGCTCGGAGC
78% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000317571.8
ENST00000584250.1
CDS CAA 90 bp TTGAAAAGCTGGTCCGACTCCCTGAAGCCGTTGTTGAGCAGCATGTaGATGCCGGCCAGGGCCAGCTCCGCGTCCTGCAGGGGCGCCGCC +
Preference number: 6 (lower is better)
Translates to: LKSWSDSLKPLLSSM*MPARASSASCRGAA
Trigger: GGCGGCGCCCCTGCAGGACGCGGAGCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000317571.8
ENST00000578150.1
ENST00000584250.1
CDS CCA 72 bp CAGGGCTCCTCTCACTGCCCTACACTTGCAGGGAGGTaGACTTCCCTCCCCTGGGCTTCCAGGTGCGTCTCC +
Preference number: 6 (lower is better)
Translates to: QGSSHCPTLAGR*TSLPWASRCVS
Trigger: GGAGACGCACCTGGAAGCCCAGGGGAGGGAAGTCCACCTCCCTGCAAGTGTAGGGCAGTGAGAGGAGCCCTG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS CAA 72 bp TGGTCCGACTCCCTGAAGCCGTTGTTGAGCAGCATGTaGATGCCGGCCAGGGCCAGCTCCGCGTCCTGCAGG +
Preference number: 6 (lower is better)
Translates to: WSDSLKPLLSSM*MPARASSASCR
Trigger: CCTGCAGGACGCGGAGCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAACGGCTTCAGGGAGTCGGACCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000317571.8
ENST00000578150.1
ENST00000584250.1
CDS CAA 72 bp TGTTTGAAAAGCTGGTCCGACTCCCTGAAGCCGTTGTaGAGCAGCATGTTGATGCCGGCCAGGGCCAGCTCC +
Preference number: 6 (lower is better)
Translates to: CLKSWSDSLKPL*SSMLMPARASS
Trigger: GGAGCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317571.8
ENST00000578150.1
ENST00000584250.1
CDS CAA 90 bp TTTCTGTATTGTTTGAAAAGCTGGTCCGACTCCCTGAAGCCGTTGTaGAGCAGCATGTTGATGCCGGCCAGGGCCAGCTCCGCGTCCTGC +
Preference number: 6 (lower is better)
Translates to: FLYCLKSWSDSLKPL*SSMLMPARASSASC
Trigger: GCAGGACGCGGAGCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAATACAGAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317571.8
ENST00000578150.1
ENST00000584250.1
CDS GCA 72 bp CTGAACGGTGCATGCATTTCTTTCTTGCTCTGCTGGTaGCAGGGCTCCTCTCACTGCCCTACACTTGCAGGG +
Preference number: 6 (lower is better)
Translates to: LNGACISFLLCW*QGSSHCPTLAG
Trigger: CCCTGCAAGTGTAGGGCAGTGAGAGGAGCCCTGGCACCAGCAGAGCAAGAAAGAAATGCATGCACCGTTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS CAA 90 bp CTTTTTCTGTATTGTTTGAAAAGCTGGTCCGACTCCCTGAAGCCGTaGTTGAGCAGCATGTTGATGCCGGCCAGGGCCAGCTCCGCGTCC +
Preference number: 6 (lower is better)
Translates to: LFLYCLKSWSDSLKP*LSSMLMPARASSAS
Trigger: GGACGCGGAGCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAATACAGAAAAAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000584250.1
CDS CAA 72 bp TATTGTTTGAAAAGCTGGTCCGACTCCCTGAAGCCGTaGTTGAGCAGCATGTTGATGCCGGCCAGGGCCAGC +
Preference number: 6 (lower is better)
Translates to: YCLKSWSDSLKP*LSSMLMPARAS
Trigger: GCTGGCCCTGGCCGGCATCAACATGCTGCTCAACAACGGCTTCAGGGAGTCGGACCAGCTTTTCAAACAATA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000317571.8
ENST00000578150.1
ENST00000584250.1
CDS CAA 72 bp AGGCGGTCTCCAGGAAAACCCAGCAGGTTGATGATTTaGAGCAGGTTTGGGGGCACCATGGATATGCAAAGG +
Preference number: 6 (lower is better)
Translates to: RRSPGKPSRLMI*SRFGGTMDMQR
Trigger: CCTTTGCATATCCATGGTGCCCCCAAACCTGCTCAAAATCATCAACCTGCTGGGTTTTCCTGGAGACCGCCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000304621.10
ENST00000317571.8
CDS GCA 72 bp ATAGACGCCAACACACAGAGCGCTTTGGTTGGGGTTTaGTTCCGAAATCGCTCTGCCTTTTTCACCGAGAAC +
Preference number: 6 (lower is better)
Translates to: IDANTQSALVGV*FRNRSAFFTEN
Trigger: GTTCTCGGTGAAAAAGGCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGTTGGCGTCTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
ENST00000584095.1
ENST00000584424.1
CDS GCA 72 bp CTTATTCTGAACGGTGCATGCATTTCTTTCTTGCTCTaGTGGTGCCAGGGCTCCTCTCACTGCCCTACACTT +
Preference number: 6 (lower is better)
Translates to: LILNGACISFLL*WCQGSSHCPTL
Trigger: AAGTGTAGGGCAGTGAGAGGAGCCCTGGCACCAGCAGAGCAAGAAAGAAATGCATGCACCGTTCAGAATAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS GCA 72 bp AAACAGCCAGACGACCTGACAGCTTATTCTGAACGGTaGATGCATTTCTTTCTTGCTCTGCTGGTGCCAGGG +
Preference number: 6 (lower is better)
Translates to: KQPDDLTAYSER*MHFFLALLVPG
Trigger: CCCTGGCACCAGCAGAGCAAGAAAGAAATGCATGCACCGTTCAGAATAAGCTGTCAGGTCGTCTGGCTGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000540918.2
CDS CCA 72 bp CACTTCAATAGACGCCAACACACAGAGCGCTTTGGTTaGGGTTTGCTTCCGAAATCGCTCTGCCTTTTTCAC +
Preference number: 6 (lower is better)
Translates to: HFNRRQHTERFG*GLLPKSLCLFH
Trigger: GTGAAAAAGGCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGTTGGCGTCTATTGAAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
ENST00000584095.1
ENST00000584424.1
CDS CAA 72 bp AATAGACGCCAACACACAGAGCGCTTTGGTTGGGGTTaGCTTCCGAAATCGCTCTGCCTTTTTCACCGAGAA +
Preference number: 6 (lower is better)
Translates to: NRRQHTERFGWG*LPKSLCLFHRE
Trigger: TTCTCGGTGAAAAAGGCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGTTGGCGTCTATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
ENST00000584095.1
ENST00000584424.1
CDS CAA 72 bp TACAACACTTCAATAGACGCCAACACACAGAGCGCTTaGGTTGGGGTTTGCTTCCGAAATCGCTCTGCCTTT +
Preference number: 6 (lower is better)
Translates to: YNTSIDANTQSA*VGVCFRNRSAF
Trigger: AAAGGCAGAGCGATTTCGGAAGCAAACCCCAACCAAAGCGCTCTGTGTGTTGGCGTCTATTGAAGTGTTGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
ENST00000584095.1
ENST00000584424.1
CDS GCA 72 bp CAGAGAAGTATCTTTGAAGGGGCATCTCTCTGCTGTTaGTGGGAGAGAGTTTTCCAACCACTCATATACTGC +
Preference number: 6 (lower is better)
Translates to: QRSIFEGASLCC*WERVFQPLIYC
Trigger: GCAGTATATGAGTGGTTGGAAAACTCTCTCCCAGCAACAGCAGAGAGATGCCCCTTCAAAGATACTTCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000577185.1
CDS TCA 72 bp TTCAGAGACTCCTCAGACACCCCTTCAGCCACAATGTaGTTATCATTTGCAGCATCAGAAGTCAAGGACTCT +
Preference number: 6 (lower is better)
Translates to: FRDSSDTPSATM*LSFAASEVKDS
Trigger: AGAGTCCTTGACTTCTGATGCTGCAAATGATAATCACATTGTGGCTGAAGGGGTGTCTGAGGAGTCTCTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000578150.1
CDS GCA 72 bp CAGAGAAATCCTCCTTTGCTTGAAGAAGTAGAGCTCTaGCTCTTCCTACAGTCTCTGGTTTGTCTAATAGAA +
Preference number: 6 (lower is better)
Translates to: QRNPPLLEEVEL*LFLQSLVCLIE
Trigger: TTCTATTAGACAAACCAGAGACTGTAGGAAGAGGCAGAGCTCTACTTCTTCAAGCAAAGGAGGATTTCTCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENST00000304621.10
ENST00000317571.8
ENST00000540918.2
ENST00000584424.1
CDS TCA 72 bp AGAGAGAAGTATCATTGCATGTGCTACGGGAATAACTaGAGTCCTTCTTACTACAGAAGGCACCAAGCATTT +
Preference number: 6 (lower is better)
Translates to: REKYHCMCYGNN*SPSYYRRHQAF
Trigger: AAATGCTTGGTGCCTTCTGTAGTAAGAAGGACTTCAGTTATTCCCGTAGCACATGCAATGATACTTCTCTCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000581394.1