Pregenerated sensors for TSSK3 (Homo sapiens)
Ensembl gene IDs: ENSG00000162526Ensembl transcript IDs: ENST00000373534.4, ENST00000574315.1, ENST00000574792.1
Found 35 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS TCA 90 bp | TGTCTAGCGCCGCCTTCCTATCACCCTCTCAGCTCATGCTGCCTCTaGGAGGCAGCTCTACTCCACCATCGCCCTTGGCCTGCTCCTTTT | + |
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Preference number: 5 (lower is better) Translates to: CLAPPSYHPLSSCCL*EAALLHHRPWPAPF Trigger: AAAAGGAGCAGGCCAAGGGCGATGGTGGAGTAGAGCTGCCTCTCAGAGGCAGCATGAGCTGAGAGGGTGATAGGAAGGCGGCGCTAGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS GCA 90 bp | TGGTCTTGCCCAGCTGGTACCCATTGGAGAGCAGAAAGTCCTCCATaGTGTCTAGCGCCGCCTTCCTATCACCCTCTCAGCTCATGCTGC | + |
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Preference number: 5 (lower is better) Translates to: WSCPAGTHWRAESPP*CLAPPSYHPLSSCC Trigger: GCAGCATGAGCTGAGAGGGTGATAGGAAGGCGGCGCTAGACAGCATGGAGGACTTTCTGCTCTCCAATGGGTACCAGCTGGGCAAGACCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS TCA 90 bp | CTTCAATTGAAGGCCGGAGGATCATATCGGGTTCCAGGAGCCTCTTaGGCAGGTCCTGGCAATCGGCCGAGATGCTCAGATGAGTGGGGA | + |
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Preference number: 5 (lower is better) Translates to: LQLKAGGSYRVPGAS*AGPGNRPRCSDEWG Trigger: TCCCCACTCATCTGAGCATCTCGGCCGATTGCCAGGACCTGCTCAAGAGGCTCCTGGAACCCGATATGATCCTCCGGCCTTCAATTGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CCA 90 bp | CCGTCGGCAGACTCCAGCATCTCATACACCTGGATGATGTTCTTGTaGTCCAGGGTACGGACGATTTGGAGCTCCCGAGGGAGGAATCTC | + |
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Preference number: 5 (lower is better) Translates to: PSADSSISYTWMMFL*SRVRTIWSSRGRNL Trigger: GAGATTCCTCCCTCGGGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCAGGTGTATGAGATGCTGGAGTCTGCCGACGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000373534.4 ENST00000574315.1 |
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| CDS TCA 90 bp | GGCAGATTTTCCCGTCGGCAGACTCCAGCATCTCATACACCTGGATaGTGTTCTTGTGGTCCAGGGTACGGACGATTTGGAGCTCCCGAG | + |
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Preference number: 5 (lower is better) Translates to: GRFSRRQTPASHTPG*CSCGPGYGRFGAPE Trigger: CTCGGGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCAGGTGTATGAGATGCTGGAGTCTGCCGACGGGAAAATCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000373534.4 ENST00000574315.1 |
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| CDS CCA 90 bp | TTGAGTAGGTCCCTTCCCCAATGGTCTTGCCCAGCTGGTACCCATTaGAGAGCAGAAAGTCCTCCATGCTGTCTAGCGCCGCCTTCCTAT | + |
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Preference number: 5 (lower is better) Translates to: LSRSLPQWSCPAGTH*RAESPPCCLAPPSY Trigger: ATAGGAAGGCGGCGCTAGACAGCATGGAGGACTTTCTGCTCTCCAATGGGTACCAGCTGGGCAAGACCATTGGGGAAGGGACCTACTCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CCA 90 bp | ACCAGGCAGATTTTCCCGTCGGCAGACTCCAGCATCTCATACACCTaGATGATGTTCTTGTGGTCCAGGGTACGGACGATTTGGAGCTCC | + |
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Preference number: 5 (lower is better) Translates to: TRQIFPSADSSISYT*MMFLWSRVRTIWSS Trigger: GGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCAGGTGTATGAGATGCTGGAGTCTGCCGACGGGAAAATCTGCCTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000373534.4 ENST00000574315.1 |
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| CDS CCA 90 bp | TCATACACCTGGATGATGTTCTTGTGGTCCAGGGTACGGACGATTTaGAGCTCCCGAGGGAGGAATCTCTGGATAAACTCTTCTGGCCCT | + |
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Preference number: 5 (lower is better) Translates to: SYTWMMFLWSRVRTI*SSRGRNLWINSSGP Trigger: AGGGCCAGAAGAGTTTATCCAGAGATTCCTCCCTCGGGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCAGGTGTATGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CCA 90 bp | TCATACACCTGGATGATGTTCTTGTGGTCCAGGGTACGGACGATTTaGAGCTCCCGAGGGAGGAATCTCTGGATAAACTCTTTTGTAGGA | + |
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Preference number: 5 (lower is better) Translates to: SYTWMMFLWSRVRTI*SSRGRNLWINSFVG Trigger: TCCTACAAAAGAGTTTATCCAGAGATTCCTCCCTCGGGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCAGGTGTATGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574315.1 |
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| CDS GCA 90 bp | GAGAGCACTTGCCATTGCTTTTATCAAGTGCTTGCTAGCCATGGATaGCAACTAACTTCTTCAATTGAAGGCCGGAGGATCATATCGGGT | + |
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Preference number: 5 (lower is better) Translates to: ESTCHCFYQVLASHG*QLTSSIEGRRIISG Trigger: ACCCGATATGATCCTCCGGCCTTCAATTGAAGAAGTTAGTTGGCATCCATGGCTAGCAAGCACTTGATAAAAGCAATGGCAAGTGCTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS GCA 90 bp | TTGGGTTTGCTTTCTCCCCCTACTTTATTGGAGAGCACTTGCCATTaGTTTTATCAAGTGCTTGCTAGCCATGGATGCCAACTAACTTCT | + |
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Preference number: 5 (lower is better) Translates to: LGLLSPPTLLESTCH*FYQVLASHGCQLTS Trigger: AGAAGTTAGTTGGCATCCATGGCTAGCAAGCACTTGATAAAAGCAATGGCAAGTGCTCTCCAATAAAGTAGGGGGAGAAAGCAAACCCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CCA 72 bp | CCCGGTGGGCCACACCACAGCCATGGCAGTAGCGGATaGCCTCAACCATCTGACGGAAGAGGGCCTTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: PGGPHHSHGSSG*PQPSDGRGPWP Trigger: GGGCCAAGGCCCTCTTCCGTCAGATGGTTGAGGCCATCCGCTACTGCCATGGCTGTGGTGTGGCCCACCGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CAA 90 bp | CAGCTCATGCTGCCTCTGAGAGGCAGCTCTACTCCACCATCGCCCTaGGCCTGCTCCTTTTCTCCCCAAGGACTTCATCCGCAGCCGCCC | + |
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Preference number: 6 (lower is better) Translates to: QLMLPLRGSSTPPSP*ACSFSPQGLHPQPP Trigger: GGGCGGCTGCGGATGAAGTCCTTGGGGAGAAAAGGAGCAGGCCAAGGGCGATGGTGGAGTAGAGCTGCCTCTCAGAGGCAGCATGAGCTG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CCA 72 bp | GCAGGTCCTGGCAATCGGCCGAGATGCTCAGATGAGTaGGGAAGGACACCCCCTTCTGCTGCTGCCACAGCA | + |
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Preference number: 6 (lower is better) Translates to: AGPGNRPRCSDE*GRTPPSAAATA Trigger: TGCTGTGGCAGCAGCAGAAGGGGGTGTCCTTCCCCACTCATCTGAGCATCTCGGCCGATTGCCAGGACCTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS TCA 72 bp | CCGCCTTCCTATCACCCTCTCAGCTCATGCTGCCTCTaGGAGGCAGCTCTACTCCACCATCGCCCTTGGCCT | + |
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Preference number: 6 (lower is better) Translates to: PPSYHPLSSCCL*EAALLHHRPWP Trigger: AGGCCAAGGGCGATGGTGGAGTAGAGCTGCCTCTCAGAGGCAGCATGAGCTGAGAGGGTGATAGGAAGGCGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS TCA 72 bp | TTGAGCAGGTCCTGGCAATCGGCCGAGATGCTCAGATaGGTGGGGAAGGACACCCCCTTCTGCTGCTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LSRSWQSAEMLR*VGKDTPFCCCH Trigger: GTGGCAGCAGCAGAAGGGGGTGTCCTTCCCCACTCATCTGAGCATCTCGGCCGATTGCCAGGACCTGCTCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CAA 72 bp | CTGCCTCTGAGAGGCAGCTCTACTCCACCATCGCCCTaGGCCTGCTCCTTTTCTCCCCAAGGACTTCATCCG | + |
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Preference number: 6 (lower is better) Translates to: LPLRGSSTPPSP*ACSFSPQGLHP Trigger: CGGATGAAGTCCTTGGGGAGAAAAGGAGCAGGCCAAGGGCGATGGTGGAGTAGAGCTGCCTCTCAGAGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CAA 72 bp | CTGCCGCAGAAGGTCTGGCTCAGCTCCCGGTGTGACTaGGGCAACACCTTGGCAAAGCCAAAGTCAGTCAGC | + |
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Preference number: 6 (lower is better) Translates to: LPQKVWLSSRCD*GNTLAKPKSVS Trigger: GCTGACTGACTTTGGCTTTGCCAAGGTGTTGCCCAAGTCACACCGGGAGCTGAGCCAGACCTTCTGCGGCAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CAA 72 bp | GAAGGCCGGAGGATCATATCGGGTTCCAGGAGCCTCTaGAGCAGGTCCTGGCAATCGGCCGAGATGCTCAGA | + |
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Preference number: 6 (lower is better) Translates to: EGRRIISGSRSL*SRSWQSAEMLR Trigger: TCTGAGCATCTCGGCCGATTGCCAGGACCTGCTCAAGAGGCTCCTGGAACCCGATATGATCCTCCGGCCTTC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS TCA 72 bp | AAGGCCGGAGGATCATATCGGGTTCCAGGAGCCTCTTaGGCAGGTCCTGGCAATCGGCCGAGATGCTCAGAT | + |
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Preference number: 6 (lower is better) Translates to: KAGGSYRVPGAS*AGPGNRPRCSD Trigger: ATCTGAGCATCTCGGCCGATTGCCAGGACCTGCTCAAGAGGCTCCTGGAACCCGATATGATCCTCCGGCCTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS GCA 72 bp | CCAGCTGGTACCCATTGGAGAGCAGAAAGTCCTCCATaGTGTCTAGCGCCGCCTTCCTATCACCCTCTCAGC | + |
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Preference number: 6 (lower is better) Translates to: PAGTHWRAESPP*CLAPPSYHPLS Trigger: GCTGAGAGGGTGATAGGAAGGCGGCGCTAGACAGCATGGAGGACTTTCTGCTCTCCAATGGGTACCAGCTGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CCA 72 bp | TCCCTTCCCCAATGGTCTTGCCCAGCTGGTACCCATTaGAGAGCAGAAAGTCCTCCATGCTGTCTAGCGCCG | + |
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Preference number: 6 (lower is better) Translates to: SLPQWSCPAGTH*RAESPPCCLAP Trigger: CGGCGCTAGACAGCATGGAGGACTTTCTGCTCTCCAATGGGTACCAGCTGGGCAAGACCATTGGGGAAGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CAA 72 bp | GTCCCTTCCCCAATGGTCTTGCCCAGCTGGTACCCATaGGAGAGCAGAAAGTCCTCCATGCTGTCTAGCGCC | + |
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Preference number: 6 (lower is better) Translates to: VPSPMVLPSWYP*ESRKSSMLSSA Trigger: GGCGCTAGACAGCATGGAGGACTTTCTGCTCTCCAATGGGTACCAGCTGGGCAAGACCATTGGGGAAGGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS CAA 72 bp | TTCAGGTTGAAGCCCTGCAACAAGGCGTTCTCACATTaGAGGTCCCGGTGGGCCACACCACAGCCATGGCAG | + |
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Preference number: 6 (lower is better) Translates to: FRLKPCNKAFSH*RSRWATPQPWQ Trigger: CTGCCATGGCTGTGGTGTGGCCCACCGGGACCTCAAATGTGAGAACGCCTTGTTGCAGGGCTTCAACCTGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS TCA 72 bp | TGTACTGCCGCAGAAGGTCTGGCTCAGCTCCCGGTGTaGCTTGGGCAACACCTTGGCAAAGCCAAAGTCAGT | + |
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Preference number: 6 (lower is better) Translates to: CTAAEGLAQLPV*LGQHLGKAKVS Trigger: ACTGACTTTGGCTTTGCCAAGGTGTTGCCCAAGTCACACCGGGAGCTGAGCCAGACCTTCTGCGGCAGTACA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS TCA 72 bp | TCCCGTCGGCAGACTCCAGCATCTCATACACCTGGATaGTGTTCTTGTGGTCCAGGGTACGGACGATTTGGA | + |
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Preference number: 6 (lower is better) Translates to: SRRQTPASHTPG*CSCGPGYGRFG Trigger: TCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCAGGTGTATGAGATGCTGGAGTCTGCCGACGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000373534.4 ENST00000574315.1 |
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| CDS CAA 90 bp | CTCATACACCTGGATGATGTTCTTGTGGTCCAGGGTACGGACGATTaGGAGCTCCCGAGGGAGGAATCTCTGGATAAACTCTTCTGGCCC | + |
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Preference number: 6 (lower is better) Translates to: LIHLDDVLVVQGTDD*ELPREESLDKLFWP Trigger: GGGCCAGAAGAGTTTATCCAGAGATTCCTCCCTCGGGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCAGGTGTATGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS TCA 72 bp | TGTCTGTGTCGTCAAAAGGTAGGCTGGCACAGAGCATaGCATACAGGACCACACCCATGCTCCAGACATCAC | + |
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Preference number: 6 (lower is better) Translates to: CLCRQKVGWHRA*HTGPHPCSRHH Trigger: GTGATGTCTGGAGCATGGGTGTGGTCCTGTATGTCATGCTCTGTGCCAGCCTACCTTTTGACGACACAGACA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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| CDS GCA 72 bp | ACAACGTGTGTATACAACTCCTTCAAGAATGCTGGCTaGAGAGGGGAGCTGGCGAAGGATGTGGAGTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: TTCVYNSFKNAG*RGELAKDVELR Trigger: CCTCAACTCCACATCCTTCGCCAGCTCCCCTCTGCAGCCAGCATTCTTGAAGGAGTTGTATACACACGTTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574792.1 |
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| CDS CAA 72 bp | CTGGATGATGTTCTTGTGGTCCAGGGTACGGACGATTaGGAGCTCCCGAGGGAGGAATCTCTGGATAAACTC | + |
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Preference number: 6 (lower is better) Translates to: LDDVLVVQGTDD*ELPREESLDKL Trigger: GAGTTTATCCAGAGATTCCTCCCTCGGGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000373534.4 ENST00000574315.1 |
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| CDS CCA 72 bp | TGGATGATGTTCTTGTGGTCCAGGGTACGGACGATTTaGAGCTCCCGAGGGAGGAATCTCTGGATAAACTCT | + |
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Preference number: 6 (lower is better) Translates to: WMMFLWSRVRTI*SSRGRNLWINS Trigger: AGAGTTTATCCAGAGATTCCTCCCTCGGGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000373534.4 ENST00000574315.1 |
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| CDS CCA 72 bp | ATTTTCCCGTCGGCAGACTCCAGCATCTCATACACCTaGATGATGTTCTTGTGGTCCAGGGTACGGACGATT | + |
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Preference number: 6 (lower is better) Translates to: IFPSADSSISYT*MMFLWSRVRTI Trigger: AATCGTCCGTACCCTGGACCACAAGAACATCATCCAGGTGTATGAGATGCTGGAGTCTGCCGACGGGAAAAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000373534.4 ENST00000574315.1 |
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| CDS CAA 90 bp | CTCATACACCTGGATGATGTTCTTGTGGTCCAGGGTACGGACGATTaGGAGCTCCCGAGGGAGGAATCTCTGGATAAACTCTTTTGTAGG | + |
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Preference number: 6 (lower is better) Translates to: LIHLDDVLVVQGTDD*ELPREESLDKLFCR Trigger: CCTACAAAAGAGTTTATCCAGAGATTCCTCCCTCGGGAGCTCCAAATCGTCCGTACCCTGGACCACAAGAACATCATCCAGGTGTATGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574315.1 |
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| CDS GCA 72 bp | AGTAGAAACAACGTGTGTATACAACTCCTTCAAGAATaGTGGCTGCAGAGGGGAGCTGGCGAAGGATGTGGA | + |
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Preference number: 6 (lower is better) Translates to: SRNNVCIQLLQE*WLQRGAGEGCG Trigger: TCCACATCCTTCGCCAGCTCCCCTCTGCAGCCAGCATTCTTGAAGGAGTTGTATACACACGTTGTTTCTACT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000574792.1 |
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| CDS GCA 72 bp | TGCCATTGCTTTTATCAAGTGCTTGCTAGCCATGGATaGCAACTAACTTCTTCAATTGAAGGCCGGAGGATC | + |
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Preference number: 6 (lower is better) Translates to: CHCFYQVLASHG*QLTSSIEGRRI Trigger: GATCCTCCGGCCTTCAATTGAAGAAGTTAGTTGGCATCCATGGCTAGCAAGCACTTGATAAAAGCAATGGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000373534.4 |
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