Pregenerated sensors for TSPAN9-IT1 (Homo sapiens)
Ensembl gene IDs: ENSG00000256197Ensembl transcript IDs: ENST00000539784.1
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | AATGCAGCCCTGCCATTACCCAAATCCACCCCACCACGGGCTTCGTaGCCAATTACATACAGTGCAGGGGAGCCCTCCCGAGCCTGGAAT | + |
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Preference number: 5 (lower is better) Translates to: NAALPLPKSTPPRAS*PITYSAGEPSRAWN Trigger: ATTCCAGGCTCGGGAGGGCTCCCCTGCACTGTATGTAATTGGGCACGAAGCCCGTGGTGGGGTGGATTTGGGTAATGGCAGGGCTGCATT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 90 bp | GCTTCGTGCCCAATTACATACAGTGCAGGGGAGCCCTCCCGAGCCTaGAATCAGAAAATCCGCCTAAGAAATGCAAACTGGCAGCCAGAA | + |
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Preference number: 5 (lower is better) Translates to: ASCPITYSAGEPSRA*NQKIRLRNANWQPE Trigger: TTCTGGCTGCCAGTTTGCATTTCTTAGGCGGATTTTCTGATTCCAGGCTCGGGAGGGCTCCCCTGCACTGTATGTAATTGGGCACGAAGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 90 bp | CCTGATCTCCAGGAAGTGCTAGAAATTGCAATCCAATTGTGTCCCTaGCTAGCGAAGCTGGCTGGAGGCTGGGGACGCTTTGCATCAAAA | + |
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Preference number: 5 (lower is better) Translates to: PDLQEVLEIAIQLCP*LAKLAGGWGRFASK Trigger: TTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS GCA 90 bp | ATACACATGCATGCATGCACCCACTCACACACATGCACACACGTGTaGAAACACAAACACACACATGCTCTGCAGGCGTGTGTGACTGAC | + |
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Preference number: 5 (lower is better) Translates to: IHMHACTHSHTCTHV*KHKHTHALQACVTD Trigger: GTCAGTCACACACGCCTGCAGAGCATGTGTGTGTTTGTGTTTGCACACGTGTGTGCATGTGTGTGAGTGGGTGCATGCATGCATGTGTAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 90 bp | GCTAGAAATTGCAATCCAATTGTGTCCCTGGCTAGCGAAGCTGGCTaGAGGCTGGGGACGCTTTGCATCAAAATCATGTGGGAAGCTTTT | + |
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Preference number: 5 (lower is better) Translates to: ARNCNPIVSLASEAG*RLGTLCIKIMWEAF Trigger: AAAAGCTTCCCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 90 bp | CATGCTCTGCAGGCGTGTGTGACTGACAGTGCACTACAAACCACATaGAAAGGTGGCCAGAAACACCGCTGGATTTTTATAGCTCTTCAG | + |
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Preference number: 5 (lower is better) Translates to: HALQACVTDSALQTT*KGGQKHRWIFIALQ Trigger: CTGAAGAGCTATAAAAATCCAGCGGTGTTTCTGGCCACCTTTCCATGTGGTTTGTAGTGCACTGTCAGTCACACACGCCTGCAGAGCATG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 90 bp | ATTGCAATCCAATTGTGTCCCTGGCTAGCGAAGCTGGCTGGAGGCTaGGGACGCTTTGCATCAAAATCATGTGGGAAGCTTTTCGAAATA | + |
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Preference number: 5 (lower is better) Translates to: IAIQLCPWLAKLAGG*GRFASKSCGKLFEI Trigger: TATTTCGAAAAGCTTCCCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 90 bp | GACAGTGCACTACAAACCACATGGAAAGGTGGCCAGAAACACCGCTaGATTTTTATAGCTCTTCAGGGACCTGATCTCCAGGAAGTGCTA | + |
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Preference number: 5 (lower is better) Translates to: DSALQTTWKGGQKHR*IFIALQGPDLQEVL Trigger: TAGCACTTCCTGGAGATCAGGTCCCTGAAGAGCTATAAAAATCCAGCGGTGTTTCTGGCCACCTTTCCATGTGGTTTGTAGTGCACTGTC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS TCA 90 bp | AGGTGGCCAGAAACACCGCTGGATTTTTATAGCTCTTCAGGGACCTaGTCTCCAGGAAGTGCTAGAAATTGCAATCCAATTGTGTCCCTG | + |
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Preference number: 5 (lower is better) Translates to: RWPETPLDFYSSSGT*SPGSARNCNPIVSL Trigger: CAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGGTCCCTGAAGAGCTATAAAAATCCAGCGGTGTTTCTGGCCACCT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS TCA 90 bp | AATGCAAACTGGCAGCCAGAAACTAGCAACATAGGTAATGCAATATaGGAGCCTCCCTTAAAGCCAAATACACATGCATGCATGCACCCA | + |
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Preference number: 5 (lower is better) Translates to: NANWQPETSNIGNAI*EPPLKPNTHACMHP Trigger: TGGGTGCATGCATGCATGTGTATTTGGCTTTAAGGGAGGCTCTCATATTGCATTACCTATGTTGCTAGTTTCTGGCTGCCAGTTTGCATT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS GCA 72 bp | CTGCCATTACCCAAATCCACCCCACCACGGGCTTCGTaGCCAATTACATACAGTGCAGGGGAGCCCTCCCGA | + |
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Preference number: 6 (lower is better) Translates to: LPLPKSTPPRAS*PITYSAGEPSR Trigger: TCGGGAGGGCTCCCCTGCACTGTATGTAATTGGGCACGAAGCCCGTGGTGGGGTGGATTTGGGTAATGGCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CAA 90 bp | CTTCAGGGACCTGATCTCCAGGAAGTGCTAGAAATTGCAATCCAATaGTGTCCCTGGCTAGCGAAGCTGGCTGGAGGCTGGGGACGCTTT | + |
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Preference number: 6 (lower is better) Translates to: LQGPDLQEVLEIAIQ*CPWLAKLAGGWGRF Trigger: AAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGGTCCCTGAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 72 bp | CAATTGTGTCCCTGGCTAGCGAAGCTGGCTGGAGGCTaGGGACGCTTTGCATCAAAATCATGTGGGAAGCTT | + |
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Preference number: 6 (lower is better) Translates to: QLCPWLAKLAGG*GRFASKSCGKL Trigger: AAGCTTCCCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 72 bp | TGCAATCCAATTGTGTCCCTGGCTAGCGAAGCTGGCTaGAGGCTGGGGACGCTTTGCATCAAAATCATGTGG | + |
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Preference number: 6 (lower is better) Translates to: CNPIVSLASEAG*RLGTLCIKIMW Trigger: CCACATGATTTTGATGCAAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 72 bp | CAGGAAGTGCTAGAAATTGCAATCCAATTGTGTCCCTaGCTAGCGAAGCTGGCTGGAGGCTGGGGACGCTTT | + |
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Preference number: 6 (lower is better) Translates to: QEVLEIAIQLCP*LAKLAGGWGRF Trigger: AAAGCGTCCCCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CAA 72 bp | CCTGATCTCCAGGAAGTGCTAGAAATTGCAATCCAATaGTGTCCCTGGCTAGCGAAGCTGGCTGGAGGCTGG | + |
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Preference number: 6 (lower is better) Translates to: PDLQEVLEIAIQ*CPWLAKLAGGW Trigger: CCAGCCTCCAGCCAGCTTCGCTAGCCAGGGACACAATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 72 bp | CCAATTACATACAGTGCAGGGGAGCCCTCCCGAGCCTaGAATCAGAAAATCCGCCTAAGAAATGCAAACTGG | + |
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Preference number: 6 (lower is better) Translates to: PITYSAGEPSRA*NQKIRLRNANW Trigger: CCAGTTTGCATTTCTTAGGCGGATTTTCTGATTCCAGGCTCGGGAGGGCTCCCCTGCACTGTATGTAATTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 72 bp | CAGGCGTGTGTGACTGACAGTGCACTACAAACCACATaGAAAGGTGGCCAGAAACACCGCTGGATTTTTATA | + |
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Preference number: 6 (lower is better) Translates to: QACVTDSALQTT*KGGQKHRWIFI Trigger: TATAAAAATCCAGCGGTGTTTCTGGCCACCTTTCCATGTGGTTTGTAGTGCACTGTCAGTCACACACGCCTG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS CCA 72 bp | GGTTATATCCAGGCACTTTTTCCTGTGAGAAAAGAATaGGAGGAATGCAGCCCTGCCATTACCCAAATCCAC | + |
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Preference number: 6 (lower is better) Translates to: GYIQALFPVRKE*EECSPAITQIH Trigger: GTGGATTTGGGTAATGGCAGGGCTGCATTCCTCCCATTCTTTTCTCACAGGAAAAAGTGCCTGGATATAACC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS TCA 72 bp | TGGCAGCCAGAAACTAGCAACATAGGTAATGCAATATaGGAGCCTCCCTTAAAGCCAAATACACATGCATGC | + |
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Preference number: 6 (lower is better) Translates to: WQPETSNIGNAI*EPPLKPNTHAC Trigger: GCATGCATGTGTATTTGGCTTTAAGGGAGGCTCTCATATTGCATTACCTATGTTGCTAGTTTCTGGCTGCCA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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| CDS TCA 72 bp | GAAACACCGCTGGATTTTTATAGCTCTTCAGGGACCTaGTCTCCAGGAAGTGCTAGAAATTGCAATCCAATT | + |
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Preference number: 6 (lower is better) Translates to: ETPLDFYSSSGT*SPGSARNCNPI Trigger: AATTGGATTGCAATTTCTAGCACTTCCTGGAGATCAGGTCCCTGAAGAGCTATAAAAATCCAGCGGTGTTTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000539784.1 |
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