Pregenerated sensors for TRIM61 (Homo sapiens)
Ensembl gene IDs: ENSG00000183439Ensembl transcript IDs: ENST00000329314.6, ENST00000508856.2
Found 15 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | GAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCAGCACTTAGTTCCAGACCAGCCTaGGCAACCATCTCTGTAGTC | + |
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Preference number: 2 (lower is better) Translates to: EHIHTLHMVGSMAIIPALSSRPA*ATISVV Trigger: GACTACAGAGATGGTTGCCCAGGCTGGTCTGGAACT...AAGTGCTGGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS-3UTR TCA 90 bp | GAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCAGCACTTCCGGGAGGCGGAGGTTaGAGTGAGCCGAGATCGTGC | + |
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Preference number: 4 (lower is better) Translates to: EHIHTLHMVGSMAIIPALPGGGG*SEPRSC Trigger: GCACGATCTCGGCTCACTTCAACCTCCGCCTCCCGG...AAGTGCTGGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS-3UTR GCA 90 bp | GAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCAGCACTTAAGTGGGCTGCTTCCTaGCTGGGGCTCAGCCTGCGC | + |
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Preference number: 4 (lower is better) Translates to: EHIHTLHMVGSMAIIPALKWAAS*LGLSLR Trigger: GCGCAGGCTGAGCCCCAGGCAGGAAGCAGCCCACTT...AAGTGCTGGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS-3UTR GCA 90 bp | GAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCAGCACTTCCCCACCAAGTGGGCTaGTTCCTGCCTGGGGCTCAG | + |
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Preference number: 4 (lower is better) Translates to: EHIHTLHMVGSMAIIPALPHQVG*FLPGAQ Trigger: CTGAGCCCCAGGCAGGAAGCAGCCCACTTGGTGGGG...AAGTGCTGGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS-3UTR TCA 90 bp | GGTATAGGAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCCACATCCCCAGTTTCTaGCTCAGTAGGGCTGGTTTT | + |
|
Preference number: 4 (lower is better) Translates to: GIGTYTYPTHGWQHGYNPHIPSF*LSRAGF Trigger: AAAACCAGCCCTACTGAGTCAGAAACTGGGGATGTG...GGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTCCTATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS-3UTR GCA 90 bp | GAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCAGCACTTATGATGCTGCTGGCCTaGGGACTGTACTTTGTGAAC | + |
|
Preference number: 4 (lower is better) Translates to: EHIHTLHMVGSMAIIPALMMLLA*GLYFVN Trigger: GTTCACAAAGTACAGTCCGCAGGCCAGCAGCATCAT...AAGTGCTGGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS-3UTR GCA 90 bp | GAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCAGCACTTGCCTCTTCCTCTTCTTaGTTCTTATCTGGAGTTGCT | + |
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Preference number: 4 (lower is better) Translates to: EHIHTLHMVGSMAIIPALASSSS*FLSGVA Trigger: AGCAACTCCAGATAAGAAGCAAGAAGAGGAAGAGGC...AAGTGCTGGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS-3UTR CCA 90 bp | GGTATAGGAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCTTTGTGAACCTATGCTaGAGCAGACGGATCAGCAAA | + |
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Preference number: 4 (lower is better) Translates to: GIGTYTYPTHGWQHGYNPFVNLC*SRRISK Trigger: TTTGCTGATCCGTCTGCTCCAGCATAGGTTCACAAA...GGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTCCTATACC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS GCA 90 bp | TCCCAGATGATGCTGCTGGCCTGCGGACTGTACTTTGTGAACCTATaGTGGAGCAGACGGATCAGCAAATCCGGCCAAAGAATACTCAGG | + |
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Preference number: 5 (lower is better) Translates to: SQMMLLACGLYFVNL*WSRRISKSGQRILR Trigger: CCTGAGTATTCTTTGGCCGGATTTGCTGATCCGTCTGCTCCAGCATAGGTTCACAAAGTACAGTCCGCAGGCCAGCAGCATCATCTGGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS CCA 90 bp | CAGATGATGCTGCTGGCCTGCGGACTGTACTTTGTGAACCTATGCTaGAGCAGACGGATCAGCAAATCCGGCCAAAGAATACTCAGGACC | + |
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Preference number: 5 (lower is better) Translates to: QMMLLACGLYFVNLC*SRRISKSGQRILRT Trigger: GGTCCTGAGTATTCTTTGGCCGGATTTGCTGATCCGTCTGCTCCAGCATAGGTTCACAAAGTACAGTCCGCAGGCCAGCAGCATCATCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS-3UTR CAA 90 bp | GGTATAGGAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCAATCACCTGGAGGTCTaGGTAAAAGATTGCCTGGGC | + |
|
Preference number: 5 (lower is better) Translates to: GIGTYTYPTHGWQHGYNPNHLEV*VKDCLG Trigger: GCCCAGGCAATCTTTTACCAAGACCTCCAGGTGATT...GGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTCCTATACC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS-3UTR CAA 90 bp | GGTATAGGAACATATACATACCCTACACATGGTTGGCAGCATGGCTATAATCCCTGCCTCTTCCTCTTCTaGCTTCTTATCTGGAGTTGC | + |
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Preference number: 5 (lower is better) Translates to: GIGTYTYPTHGWQHGYNPCLFLF*LLIWSC Trigger: GCAACTCCAGATAAGAAGCAAGAAGAGGAAGAGGCA...GGGATTATAGCCATGCTGCCAACCATGTGTAGGGTATGTATATGTTCCTATACC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS GCA 72 bp | ATGCTGCTGGCCTGCGGACTGTACTTTGTGAACCTATaGTGGAGCAGACGGATCAGCAAATCCGGCCAAAGA | + |
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Preference number: 6 (lower is better) Translates to: MLLACGLYFVNL*WSRRISKSGQR Trigger: TCTTTGGCCGGATTTGCTGATCCGTCTGCTCCAGCATAGGTTCACAAAGTACAGTCCGCAGGCCAGCAGCAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS CCA 72 bp | CTGCTGGCCTGCGGACTGTACTTTGTGAACCTATGCTaGAGCAGACGGATCAGCAAATCCGGCCAAAGAATA | + |
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Preference number: 6 (lower is better) Translates to: LLACGLYFVNLC*SRRISKSGQRI Trigger: TATTCTTTGGCCGGATTTGCTGATCCGTCTGCTCCAGCATAGGTTCACAAAGTACAGTCCGCAGGCCAGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000329314.6 |
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| CDS CAA 72 bp | GGGAATCCTTCCTTGCATTATAATCACCTGGAGGTCTaGGTAAAAGATTGCCTGGGCCACATCCCCAGTTTC | + |
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Preference number: 6 (lower is better) Translates to: GNPSLHYNHLEV*VKDCLGHIPSF Trigger: GAAACTGGGGATGTGGCCCAGGCAATCTTTTACCAAGACCTCCAGGTGATTATAATGCAAGGAAGGATTCCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000329314.6 ENST00000508856.2 |
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