Pregenerated sensors for TRIM60 (Homo sapiens)

Ensembl gene IDs: ENSG00000176979

Ensembl transcript IDs: ENST00000507119.1, ENST00000512596.6, ENST00000647760.1

Found 8 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	GAGCAGTTGGACCGGCGGCTCAGGCCTGATGCTGTGCAGGACCCATaGAACCCCGCGGGGCGCAGAGCGGAAACCCTCACACAACCCTGG	+
Preference number: 5 (lower is better) Translates to: EQLDRRLRPDAVQDP*NPAGRRAETLTQPW Trigger: CCAGGGTTGTGTGAGGGTTTCCGCTCTGCGCCCCGCGGGGTTCCATGGGTCCTGCACAGCATCAGGCCTGAGCCGCCGGTCCAACTGCTC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000507119.1 ENST00000512596.6
CDS TCA 90 bp	CACAAACTCCATCGAGCTGGAGCAGTTGGACCGGCGGCTCAGGCCTaGTGCTGTGCAGGACCCATGGAACCCCGCGGGGCGCAGAGCGGA	+
Preference number: 5 (lower is better) Translates to: HKLHRAGAVGPAAQA*CCAGPMEPRGAQSG Trigger: TCCGCTCTGCGCCCCGCGGGGTTCCATGGGTCCTGCACAGCATCAGGCCTGAGCCGCCGGTCCAACTGCTCCAGCTCGATGGAGTTTGTG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000507119.1
CDS TCA 90 bp	CCAGTTAGTAACTGTCTTCCGCTGTGTTCACTGGTCCTCAGGAATTaGAGGTCCACTGTGAGTCCTCTTGCTCAGGAAAGAGTCACCACT	+
Preference number: 5 (lower is better) Translates to: PVSNCLPLCSLVLRN*RSTVSPLAQERVTT Trigger: AGTGGTGACTCTTTCCTGAGCAAGAGGACTCACAGTGGACCTTCAATTCCTGAGGACCAGTGAACACAGCGGAAGACAGTTACTAACTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647760.1
CDS CCA 90 bp	GGACTGCTGAATACAGGAGGAGAGGGTGACAGGATGATCAATAATTaGTTGGGGTCAGTGGCTCTTGAAGCTTCTTCAGAGCTTGTTCAG	+
Preference number: 5 (lower is better) Translates to: GLLNTGGEGDRMINN*LGSVALEASSELVQ Trigger: CTGAACAAGCTCTGAAGAAGCTTCAAGAGCCACTGACCCCAACCAATTATTGATCATCCTGTCACCCTCTCCTCCTGTATTCAGCAGTCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647760.1
CDS TCA 90 bp	TTGAAGGTCCACTGTGAGTCCTCTTGCTCAGGAAAGAGTCACCACTaGAAGTCCTCTATTGCTTATGGGGAGAAGATGATTCTCATTTTA	+
Preference number: 5 (lower is better) Translates to: LKVHCESSCSGKSHH*KSSIAYGEKMILIL Trigger: TAAAATGAGAATCATCTTCTCCCCATAAGCAATAGAGGACTTTCAGTGGTGACTCTTTCCTGAGCAAGAGGACTCACAGTGGACCTTCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000647760.1
CDS CCA 72 bp	GACCGGCGGCTCAGGCCTGATGCTGTGCAGGACCCATaGAACCCCGCGGGGCGCAGAGCGGAAACCCTCACA	+
Preference number: 6 (lower is better) Translates to: DRRLRPDAVQDP*NPAGRRAETLT Trigger: TGTGAGGGTTTCCGCTCTGCGCCCCGCGGGGTTCCATGGGTCCTGCACAGCATCAGGCCTGAGCCGCCGGTC 69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000507119.1 ENST00000512596.6
CDS TCA 72 bp	AACTGTCTTCCGCTGTGTTCACTGGTCCTCAGGAATTaGAGGTCCACTGTGAGTCCTCTTGCTCAGGAAAGA	+
Preference number: 6 (lower is better) Translates to: NCLPLCSLVLRN*RSTVSPLAQER Trigger: TCTTTCCTGAGCAAGAGGACTCACAGTGGACCTTCAATTCCTGAGGACCAGTGAACACAGCGGAAGACAGTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000647760.1
CDS CCA 72 bp	AATACAGGAGGAGAGGGTGACAGGATGATCAATAATTaGTTGGGGTCAGTGGCTCTTGAAGCTTCTTCAGAG	+
Preference number: 6 (lower is better) Translates to: NTGGEGDRMINN*LGSVALEASSE Trigger: CTCTGAAGAAGCTTCAAGAGCCACTGACCCCAACCAATTATTGATCATCCTGTCACCCTCTCCTCCTGTATT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000647760.1

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