Pregenerated sensors for TRIM49D1 (Homo sapiens)
Ensembl gene IDs: ENSG00000223417Ensembl transcript IDs: ENST00000420869.3
Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CAA 90 bp | TTCATTCTCCTACATGTGGCTTGCCAATTATCCCAGCACCATTTGTaGAATAGGGTGTCCTCTCCCCACTTTATGTTTTTGTTTGCTTTG | + |
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Preference number: 6 (lower is better) Translates to: FILLHVACQLSQHHL*NRVSSPHFMFLFAL Trigger: CAAAGCAAACAAAAACATAAAGTGGGGAGAGGACACCCTATTCAACAAATGGTGCTGGGATAATTGGCAAGCCACATGTAGGAGAATGAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000420869.3 |
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| CDS CAA 90 bp | AGTTTCATTCTCCTACATGTGGCTTGCCAATTATCCCAGCACCATTaGTTGAATAGGGTGTCCTCTCCCCACTTTATGTTTTTGTTTGCT | + |
|
Preference number: 6 (lower is better) Translates to: SFILLHVACQLSQHH*LNRVSSPHFMFLFA Trigger: AGCAAACAAAAACATAAAGTGGGGAGAGGACACCCTATTCAACAAATGGTGCTGGGATAATTGGCAAGCCACATGTAGGAGAATGAAACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000420869.3 |
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| CDS CAA 90 bp | TTGTTGAATAGGGTGTCCTCTCCCCACTTTATGTTTTTGTTTGCTTaGTCAAAGATCAGTTGGTTGTTAAGTATTTGGGTTCATTTCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LLNRVSSPHFMFLFA*SKISWLLSIWVHFW Trigger: CCAGAAATGAACCCAAATACTTAACAACCAACTGATCTTTGACAAAGCAAACAAAAACATAAAGTGGGGAGAGGACACCCTATTCAACAA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000420869.3 |
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| CDS GCA 72 bp | AGTGTTTCATTGAATAACAATAAGAAAGTTTGTCTATaGCACAAAGTCCAGTTTCATTCTCCTACATGTGGC | + |
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Preference number: 6 (lower is better) Translates to: SVSLNNNKKVCL*HKVQFHSPTCG Trigger: GCCACATGTAGGAGAATGAAACTGGACTTTGTGGCATAGACAAACTTTCTTATTGTTATTCAATGAAACACT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420869.3 |
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| CDS CAA 72 bp | AAATACCTTCCCAGTAGGTCCTACGTGAGTGTTTCATaGAATAACAATAAGAAAGTTTGTCTATGCCACAAA | + |
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Preference number: 6 (lower is better) Translates to: KYLPSRSYVSVS*NNNKKVCLCHK Trigger: TTTGTGGCATAGACAAACTTTCTTATTGTTATTCAATGAAACACTCACGTAGGACCTACTGGGAAGGTATTT 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000420869.3 |
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