Pregenerated sensors for TRIM16 (Homo sapiens)
Ensembl gene IDs: ENSG00000221926Ensembl transcript IDs: ENST00000336708.11, ENST00000416464.6, ENST00000473368.1, ENST00000473659.5, ENST00000494759.1, ENST00000578237.5, ENST00000578744.5, ENST00000584142.5, ENST00000649191.2
Found 60 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TGCAGGCCCAATGAACTTTCTGGTTTGGGGTCACTATCAGCAAACTaGTCTCCAGCCCTGTCTTTCTCGTGTACCGCTGCTTCTTGGCAC | + |
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Preference number: 1 (lower is better) Translates to: CRPNELSGLGSLSAN*SPALSFSCTAASWH Trigger: GTGCCAAGAAGCAGCGGTACACGAGAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATTGGGCCTGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| 3UTR CCA 90 bp | AGGTCCAGTTCTACTGGAGGTGCAGGCCCAATGAACTTTCTGGTTTaGGGTCACTATCAGCAAACTGGTCTCCAGCCCTGTCTTTCTCGT | + |
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Preference number: 1 (lower is better) Translates to: RSSSTGGAGPMNFLV*GHYQQTGLQPCLSR Trigger: ACGAGAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATTGGGCCTGCACCTCCAGTAGAACTGGACCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| 3UTR CAA 90 bp | CAGGTCCAGTTCTACTGGAGGTGCAGGCCCAATGAACTTTCTGGTTaGGGGTCACTATCAGCAAACTGGTCTCCAGCCCTGTCTTTCTCG | + |
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Preference number: 2 (lower is better) Translates to: QVQFYWRCRPNELSG*GSLSANWSPALSFS Trigger: CGAGAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATTGGGCCTGCACCTCCAGTAGAACTGGACCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| 3UTR TCA 72 bp | GCCTCAGGTCCAGTTCTACTGGAGGTGCAGGCCCAATaGACTTTCTGGTTTGGGGTCACTATCAGCAAACTG | + |
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Preference number: 3 (lower is better) Translates to: ASGPVLLEVQAQ*TFWFGVTISKL Trigger: CAGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATTGGGCCTGCACCTCCAGTAGAACTGGACCTGAGGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| 3UTR CCA 72 bp | TCTACTGGAGGTGCAGGCCCAATGAACTTTCTGGTTTaGGGTCACTATCAGCAAACTGGTCTCCAGCCCTGT | + |
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Preference number: 3 (lower is better) Translates to: STGGAGPMNFLV*GHYQQTGLQPC Trigger: ACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATTGGGCCTGCACCTCCAGTAGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| 3UTR CCA 72 bp | AATGAACTTTCTGGTTTGGGGTCACTATCAGCAAACTaGTCTCCAGCCCTGTCTTTCTCGTGTACCGCTGCT | + |
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Preference number: 3 (lower is better) Translates to: NELSGLGSLSAN*SPALSFSCTAA Trigger: AGCAGCGGTACACGAGAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| CDS-3UTR TCA 90 bp | TCTGGTTTGGGGTCACTATCAGCAAACTGGTCTCCAGCCCTGTCTTTCTCGTGTGAGGTGCAGGCCCAATaGACTTTCTGGTTTGGGGTC | + |
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Preference number: 4 (lower is better) Translates to: SGLGSLSANWSPALSFSCEVQAQ*TFWFGV Trigger: GACCCCAAACCAGAAAGTTCATTGGGCCTGCACCTC...ACACGAGAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| CDS-3UTR CCA 90 bp | TGCCTCAGGTCCAGTTCTACTGGAGGTGCAGGCCCAATGAACTTTCTGGTTTGGCAGGTCCAGTTCTACTaGAGGTGCAGGCCCAATGAA | + |
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Preference number: 4 (lower is better) Translates to: CLRSSSTGGAGPMNFLVWQVQFY*RCRPNE Trigger: TTCATTGGGCCTGCACCTCCAGTAGAACTGGACCTG...CCAAACCAGAAAGTTCATTGGGCCTGCACCTCCAGTAGAACTGGACCTGAGGCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| 3UTR CAA 72 bp | TTCTACTGGAGGTGCAGGCCCAATGAACTTTCTGGTTaGGGGTCACTATCAGCAAACTGGTCTCCAGCCCTG | + |
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Preference number: 4 (lower is better) Translates to: FYWRCRPNELSG*GSLSANWSPAL Trigger: CAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATTGGGCCTGCACCTCCAGTAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| CDS-3UTR CCA 90 bp | TCTGGTTTGGGGTCACTATCAGCAAACTGGTCTCCAGCCCTGTCTTTCTCGTGTTCACTATCAGCAAACTaGTCTCCAGCCCTGTCTTTC | + |
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Preference number: 4 (lower is better) Translates to: SGLGSLSANWSPALSFSCSLSAN*SPALSF Trigger: GAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGA...ACACGAGAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| CDS-3UTR GCA 90 bp | ACTGGAGGTGCAGGCCCAATGAACTTTCTGGTTTGGGGTCACTATCAGCAAACTCAGTTCTACTGGAGGTaGAGGCCCAATGAACTTTCT | + |
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Preference number: 4 (lower is better) Translates to: TGGAGPMNFLVWGHYQQTQFYWR*RPNELS Trigger: AGAAAGTTCATTGGGCCTGCACCTCCAGTAGAACTG...AGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATTGGGCCTGCACCTCCAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| CDS-3UTR CCA 90 bp | GTTTGGGGTCACTATCAGCAAACTGGTCTCCAGCCCTGTCTTTCTCGTGTACCGATGAACTTTCTGGTTTaGGGTCACTATCAGCAAACT | + |
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Preference number: 4 (lower is better) Translates to: VWGHYQQTGLQPCLSRVPMNFLV*GHYQQT Trigger: AGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCAT...CGGTACACGAGAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAAC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| CDS GCA 90 bp | GATCCCCCTGCTCTGCAGAGTCGCTGTCCTGTTCCTCCGTCTCCCTaGCAAGCTTCTCCGAGGAGCCCACGTCCTCTTCTTCCACTGGGC | + |
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Preference number: 5 (lower is better) Translates to: DPPALQSRCPVPPSP*QASPRSPRPLLPLG Trigger: GCCCAGTGGAAGAAGAGGACGTGGGCTCCTCGGAGAAGCTTGGCAGGGAGACGGAGGAACAGGACAGCGACTCTGCAGAGCAGGGGGATC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 90 bp | GTCACACAGGACCTCTTTCCCCTCACCAGCAGGATCCCCCTGCTCTaGAGAGTCGCTGTCCTGTTCCTCCGTCTCCCTGCCAAGCTTCTC | + |
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Preference number: 5 (lower is better) Translates to: VTQDLFPLTSRIPLL*RVAVLFLRLPAKLL Trigger: GAGAAGCTTGGCAGGGAGACGGAGGAACAGGACAGCGACTCTGCAGAGCAGGGGGATCCTGCTGGTGAGGGGAAAGAGGTCCTGTGTGAC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 90 bp | CAGAAGTCACACAGGACCTCTTTCCCCTCACCAGCAGGATCCCCCTaGTCTGCAGAGTCGCTGTCCTGTTCCTCCGTCTCCCTGCCAAGC | + |
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Preference number: 5 (lower is better) Translates to: QKSHRTSFPSPAGSP*SAESLSCSSVSLPS Trigger: GCTTGGCAGGGAGACGGAGGAACAGGACAGCGACTCTGCAGAGCAGGGGGATCCTGCTGGTGAGGGGAAAGAGGTCCTGTGTGACTTCTG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 90 bp | ACTGTTTCCTCCCTCCCAGAGGAAGCTCGGCCACTCATTACTGTGTaGTGGCGCTGGATGGCAGCCAGATGCGATGACGACAAGGCAGCT | + |
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Preference number: 5 (lower is better) Translates to: TVSSLPEEARPLITV*WRWMAARCDDDKAA Trigger: AGCTGCCTTGTCGTCATCGCATCTGGCTGCCATCCAGCGCCAGCACACAGTAATGAGTGGCCGAGCTTCCTCTGGGAGGGAGGAAACAGT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS CCA 90 bp | TCCCTCCCAGAGGAAGCTCGGCCACTCATTACTGTGTGCTGGCGCTaGATGGCAGCCAGATGCGATGACGACAAGGCAGCTAGAGTACTC | + |
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Preference number: 5 (lower is better) Translates to: SLPEEARPLITVCWR*MAARCDDDKAARVL Trigger: GAGTACTCTAGCTGCCTTGTCGTCATCGCATCTGGCTGCCATCCAGCGCCAGCACACAGTAATGAGTGGCCGAGCTTCCTCTGGGAGGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS CCA 90 bp | GTTTCCTCCCTCCCAGAGGAAGCTCGGCCACTCATTACTGTGTGCTaGCGCTGGATGGCAGCCAGATGCGATGACGACAAGGCAGCTAGA | + |
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Preference number: 5 (lower is better) Translates to: VSSLPEEARPLITVC*RWMAARCDDDKAAR Trigger: TCTAGCTGCCTTGTCGTCATCGCATCTGGCTGCCATCCAGCGCCAGCACACAGTAATGAGTGGCCGAGCTTCCTCTGGGAGGGAGGAAAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS CCA 90 bp | TGGGCTGTGGTGGGCAGGGCAGTATCGCCAGTTGTGGTCCTTCACTaGCTCGGTCAGCAGGTGGCTTTGCAGTTTGATGTTCACCTGATG | + |
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Preference number: 5 (lower is better) Translates to: WAVVGRAVSPVVVLH*LGQQVALQFDVHLM Trigger: CATCAGGTGAACATCAAACTGCAAAGCCACCTGCTGACCGAGCCAGTGAAGGACCACAACTGGCGATACTGCCCTGCCCACCACAGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS TCA 90 bp | CCCTCTTCCACTGCTGAAGACCCTCAGGAGAGGTTTCCTTCTTTCTaGTCCTGGCCAGGGTCAGAAACATGCATCCTATTCCTAGCTGCC | + |
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Preference number: 5 (lower is better) Translates to: PSSTAEDPQERFPSF*SWPGSETCILFLAA Trigger: GGCAGCTAGGAATAGGATGCATGTTTCTGACCCTGGCCAGGATCAGAAAGAAGGAAACCTCTCCTGAGGGTCTTCAGCAGTGGAAGAGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000473659.5 |
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| CDS GCA 90 bp | AGCCCAAGTCAGACAAGAGAACCACGCCTAGATGATTGCAGCTGCTaGAAGATTTTAACTGTTTCCTCCCTCCCAGAGGAAGCTCGGCCA | + |
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Preference number: 5 (lower is better) Translates to: SPSQTREPRLDDCSC*KILTVSSLPEEARP Trigger: TGGCCGAGCTTCCTCTGGGAGGGAGGAAACAGTTAAAATCTTGCAGCAGCTGCAATCATCTAGGCGTGGTTCTCTTGTCTGACTTGGGCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 90 bp | TGCAGCCCAAGTCAGACAAGAGAACCACGCCTAGATGATTGCAGCTaGTGCAAGATTTTAACTGTTTCCTCCCTCCCAGAGGAAGCTCGG | + |
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Preference number: 5 (lower is better) Translates to: CSPSQTREPRLDDCS*CKILTVSSLPEEAR Trigger: CCGAGCTTCCTCTGGGAGGGAGGAAACAGTTAAAATCTTGCAGCAGCTGCAATCATCTAGGCGTGGTTCTCTTGTCTGACTTGGGCTGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS TCA 90 bp | AGTTGTGGTCCTTCACTGGCTCGGTCAGCAGGTGGCTTTGCAGTTTaGTGTTCACCTGATGCGGCTGCAAGTGCTCTTCACAGTAATTCA | + |
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Preference number: 5 (lower is better) Translates to: SCGPSLARSAGGFAV*CSPDAAASALHSNS Trigger: TGAATTACTGTGAAGAGCACTTGCAGCCGCATCAGGTGAACATCAAACTGCAAAGCCACCTGCTGACCGAGCCAGTGAAGGACCACAACT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 90 bp | GATGAATACAAAAGTGCAGGGTGGTGGAAAGTGCCCTGCTGGGAGTaGCTGGATTCTAATTTCCACTATGTGCTAGTTGGCTGGGTGACC | + |
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Preference number: 5 (lower is better) Translates to: DEYKSAGWWKVPCWE*LDSNFHYVLVGWVT Trigger: GGTCACCCAGCCAACTAGCACATAGTGGAAATTAGAATCCAGGCACTCCCAGCAGGGCACTTTCCACCACCCTGCACTTTTGTATTCATC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS CCA 90 bp | GTGCCTGATGAATACAAAAGTGCAGGGTGGTGGAAAGTGCCCTGCTaGGAGTGCCTGGATTCTAATTTCCACTATGTGCTAGTTGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: VPDEYKSAGWWKVPC*ECLDSNFHYVLVGW Trigger: CCAGCCAACTAGCACATAGTGGAAATTAGAATCCAGGCACTCCCAGCAGGGCACTTTCCACCACCCTGCACTTTTGTATTCATCAGGCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS TCA 90 bp | AAACTTCTATTCTTATGTGAATCATCTGAACCCCATAGGCTCTGCTaGAGACCACGTGTCTCTGTGCCTGCTCTGGAGGTGCAGGCCCAA | + |
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Preference number: 5 (lower is better) Translates to: KLLFLCESSEPHRLC*RPRVSVPALEVQAQ Trigger: TTGGGCCTGCACCTCCAGAGCAGGCACAGAGACACGTGGTCTTCAGCAGAGCCTATGGGGTTCAGATGATTCACATAAGAATAGAAGTTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584142.5 |
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| CDS GCA 90 bp | GATCTGTGCAGCCCAAGTCAGACAAGAGAACCACGCCTAGATGATTaGAGCTGCTGCAAGATTTTAACTGTTTCCTCCCTCCCAGAGGAA | + |
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Preference number: 5 (lower is better) Translates to: DLCSPSQTREPRLDD*SCCKILTVSSLPEE Trigger: TTCCTCTGGGAGGGAGGAAACAGTTAAAATCTTGCAGCAGCTGCAATCATCTAGGCGTGGTTCTCTTGTCTGACTTGGGCTGCACAGATC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 90 bp | ACTGTGCCTGATGAATACAAAAGTGCAGGGTGGTGGAAAGTGCCCTaGTGGGAGTGCCTGGATTCTAATTTCCACTATGTGCTAGTTGGC | + |
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Preference number: 5 (lower is better) Translates to: TVPDEYKSAGWWKVP*WECLDSNFHYVLVG Trigger: GCCAACTAGCACATAGTGGAAATTAGAATCCAGGCACTCCCAGCAGGGCACTTTCCACCACCCTGCACTTTTGTATTCATCAGGCACAGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS CCA 90 bp | AATTCACCATGCAGGTTAGACAGGACTTCACTGCCTTCACTCTTCTaGTGTCATCAAGGCAGAAGTCACACAGGACCTCTTTCCCCTCAC | + |
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Preference number: 5 (lower is better) Translates to: NSPCRLDRTSLPSLF*CHQGRSHTGPLSPH Trigger: GTGAGGGGAAAGAGGTCCTGTGTGACTTCTGCCTTGATGACACCAGAAGAGTGAAGGCAGTGAAGTCCTGTCTAACCTGCATGGTGAATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 90 bp | TGTTCACCTGATGCGGCTGCAAGTGCTCTTCACAGTAATTCACCATaGAGGTTAGACAGGACTTCACTGCCTTCACTCTTCTGGTGTCAT | + |
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Preference number: 5 (lower is better) Translates to: CSPDAAASALHSNSP*RLDRTSLPSLFWCH Trigger: ATGACACCAGAAGAGTGAAGGCAGTGAAGTCCTGTCTAACCTGCATGGTGAATTACTGTGAAGAGCACTTGCAGCCGCATCAGGTGAACA 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS-3UTR CAA 90 bp | TCCAGTTCTACTGGAGGTGCAGGCCCAATGAACTTTCTGGTTTGGGGTCACTATAATGAACTTTCTGGTTaGGGGTCACTATCAGCAAAC | + |
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Preference number: 5 (lower is better) Translates to: SSSTGGAGPMNFLVWGHYNELSG*GSLSAN Trigger: GTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATT...ATAGTGACCCCAAACCAGAAAGTTCATTGGGCCTGCACCTCCAGTAGAACTGGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000494759.1 |
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| CDS CCA 90 bp | TGCTGGGAGTGCCTGGATTCTAATTTCCACTATGTGCTAGTTGGCTaGGTGACCTACAACAAGCTACTTTTCATTCTTGGGTGTTTCCTT | + |
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Preference number: 5 (lower is better) Translates to: CWECLDSNFHYVLVG*VTYNKLLFILGCFL Trigger: AAGGAAACACCCAAGAATGAAAAGTAGCTTGTTGTAGGTCACCCAGCCAACTAGCACATAGTGGAAATTAGAATCCAGGCACTCCCAGCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS TCA 90 bp | GTGCAAATGGGCAGATGGATGCCTACTATTAATAAAAGCAACAACTaGTTGATCCCTTACTTGGTGTCTGGCCCTGTGTCAACTGTTGCA | + |
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Preference number: 5 (lower is better) Translates to: VQMGRWMPTINKSNN*LIPYLVSGPVSTVA Trigger: TGCAACAGTTGACACAGGGCCAGACACCAAGTAAGGGATCAATCAGTTGTTGCTTTTATTAATAGTAGGCATCCATCTGCCCATTTGCAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS TCA 90 bp | AAATGGGCAGATGGATGCCTACTATTAATAAAAGCAACAACTGATTaGTCCCTTACTTGGTGTCTGGCCCTGTGTCAACTGTTGCATGTC | + |
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Preference number: 5 (lower is better) Translates to: KWADGCLLLIKATTD*SLTWCLALCQLLHV Trigger: GACATGCAACAGTTGACACAGGGCCAGACACCAAGTAAGGGATCAATCAGTTGTTGCTTTTATTAATAGTAGGCATCCATCTGCCCATTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS CCA 90 bp | ACTCGGGCTTCTCTCCTCATTAAGTCACTTTTTGCATCTGTAAAATaGGCTGACGGTAATGTGTCCTTCACAAAGAAAGTACATGTGAAG | + |
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Preference number: 5 (lower is better) Translates to: TRASLLIKSLFASVK*ADGNVSFTKKVHVK Trigger: CTTCACATGTACTTTCTTTGTGAAGGACACATTACCGTCAGCCCATTTTACAGATGCAAAAAGTGACTTAATGAGGAGAGAAGCCCGAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000473368.1 |
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| CDS GCA 90 bp | ACCTACAACAAGCTACTTTTCATTCTTGGGTGTTTCCTTCTTACGTaGAAATGGGCAGATGGATGCCTACTATTAATAAAAGCAACAACT | + |
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Preference number: 5 (lower is better) Translates to: TYNKLLFILGCFLLT*KWADGCLLLIKATT Trigger: AGTTGTTGCTTTTATTAATAGTAGGCATCCATCTGCCCATTTGCACGTAAGAAGGAAACACCCAAGAATGAAAAGTAGCTTGTTGTAGGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS CCA 72 bp | CCTCCTTGTCCCTGCGGGCTGCATCCAGGGAGACTATaGTGTGGCCACTGTGCTCCTGGCAACAGTCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: PPCPCGLHPGRL*CGHCAPGNSPG Trigger: GCCAGGACTGTTGCCAGGAGCACAGTGGCCACACCATAGTCTCCCTGGATGCAGCCCGCAGGGACAAGGAGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 72 bp | CACAGGACCTCTTTCCCCTCACCAGCAGGATCCCCCTaGTCTGCAGAGTCGCTGTCCTGTTCCTCCGTCTCC | + |
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Preference number: 6 (lower is better) Translates to: HRTSFPSPAGSP*SAESLSCSSVS Trigger: GGAGACGGAGGAACAGGACAGCGACTCTGCAGAGCAGGGGGATCCTGCTGGTGAGGGGAAAGAGGTCCTGTG 62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 72 bp | TCCCTCCCAGAGGAAGCTCGGCCACTCATTACTGTGTaGTGGCGCTGGATGGCAGCCAGATGCGATGACGAC | + |
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Preference number: 6 (lower is better) Translates to: SLPEEARPLITV*WRWMAARCDDD Trigger: GTCGTCATCGCATCTGGCTGCCATCCAGCGCCAGCACACAGTAATGAGTGGCCGAGCTTCCTCTGGGAGGGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 72 bp | GCTCTGCAGAGTCGCTGTCCTGTTCCTCCGTCTCCCTaGCAAGCTTCTCCGAGGAGCCCACGTCCTCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: ALQSRCPVPPSP*QASPRSPRPLL Trigger: AAGAAGAGGACGTGGGCTCCTCGGAGAAGCTTGGCAGGGAGACGGAGGAACAGGACAGCGACTCTGCAGAGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS CCA 72 bp | GAGGAAGCTCGGCCACTCATTACTGTGTGCTGGCGCTaGATGGCAGCCAGATGCGATGACGACAAGGCAGCT | + |
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Preference number: 6 (lower is better) Translates to: EEARPLITVCWR*MAARCDDDKAA Trigger: AGCTGCCTTGTCGTCATCGCATCTGGCTGCCATCCAGCGCCAGCACACAGTAATGAGTGGCCGAGCTTCCTC 60% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS CCA 72 bp | CTCCCAGAGGAAGCTCGGCCACTCATTACTGTGTGCTaGCGCTGGATGGCAGCCAGATGCGATGACGACAAG | + |
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Preference number: 6 (lower is better) Translates to: LPEEARPLITVC*RWMAARCDDDK Trigger: CTTGTCGTCATCGCATCTGGCTGCCATCCAGCGCCAGCACACAGTAATGAGTGGCCGAGCTTCCTCTGGGAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS CCA 72 bp | GTGGGCAGGGCAGTATCGCCAGTTGTGGTCCTTCACTaGCTCGGTCAGCAGGTGGCTTTGCAGTTTGATGTT | + |
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Preference number: 6 (lower is better) Translates to: VGRAVSPVVVLH*LGQQVALQFDV Trigger: AACATCAAACTGCAAAGCCACCTGCTGACCGAGCCAGTGAAGGACCACAACTGGCGATACTGCCCTGCCCAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS TCA 72 bp | CCTTCACTGGCTCGGTCAGCAGGTGGCTTTGCAGTTTaGTGTTCACCTGATGCGGCTGCAAGTGCTCTTCAC | + |
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Preference number: 6 (lower is better) Translates to: PSLARSAGGFAV*CSPDAAASALH Trigger: GTGAAGAGCACTTGCAGCCGCATCAGGTGAACATCAAACTGCAAAGCCACCTGCTGACCGAGCCAGTGAAGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS CAA 90 bp | GTATCGCCAGTTGTGGTCCTTCACTGGCTCGGTCAGCAGGTGGCTTaGCAGTTTGATGTTCACCTGATGCGGCTGCAAGTGCTCTTCACA | + |
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Preference number: 6 (lower is better) Translates to: VSPVVVLHWLGQQVA*QFDVHLMRLQVLFT Trigger: TGTGAAGAGCACTTGCAGCCGCATCAGGTGAACATCAAACTGCAAAGCCACCTGCTGACCGAGCCAGTGAAGGACCACAACTGGCGATAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS TCA 72 bp | TTCTTATGTGAATCATCTGAACCCCATAGGCTCTGCTaGAGACCACGTGTCTCTGTGCCTGCTGTGTACCGC | + |
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Preference number: 6 (lower is better) Translates to: FLCESSEPHRLC*RPRVSVPAVYR Trigger: GCGGTACACAGCAGGCACAGAGACACGTGGTCTTCAGCAGAGCCTATGGGGTTCAGATGATTCACATAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS TCA 72 bp | TTCTTATGTGAATCATCTGAACCCCATAGGCTCTGCTaGAGACCACGTGTCTCTGTGCCTGCTCTGGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: FLCESSEPHRLC*RPRVSVPALEV Trigger: CACCTCCAGAGCAGGCACAGAGACACGTGGTCTTCAGCAGAGCCTATGGGGTTCAGATGATTCACATAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000584142.5 |
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| CDS GCA 72 bp | AAAAGTGCAGGGTGGTGGAAAGTGCCCTGCTGGGAGTaGCTGGATTCTAATTTCCACTATGTGCTAGTTGGC | + |
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Preference number: 6 (lower is better) Translates to: KSAGWWKVPCWE*LDSNFHYVLVG Trigger: GCCAACTAGCACATAGTGGAAATTAGAATCCAGGCACTCCCAGCAGGGCACTTTCCACCACCCTGCACTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS GCA 72 bp | GATGCGGCTGCAAGTGCTCTTCACAGTAATTCACCATaGAGGTTAGACAGGACTTCACTGCCTTCACTCTTC | + |
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Preference number: 6 (lower is better) Translates to: DAAASALHSNSP*RLDRTSLPSLF Trigger: GAAGAGTGAAGGCAGTGAAGTCCTGTCTAACCTGCATGGTGAATTACTGTGAAGAGCACTTGCAGCCGCATC 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 72 bp | TGCCTGATGAATACAAAAGTGCAGGGTGGTGGAAAGTaGCCTGCTGGGAGTGCCTGGATTCTAATTTCCACT | + |
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Preference number: 6 (lower is better) Translates to: CLMNTKVQGGGK*PAGSAWILIST Trigger: AGTGGAAATTAGAATCCAGGCACTCCCAGCAGGGCACTTTCCACCACCCTGCACTTTTGTATTCATCAGGCA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS CCA 72 bp | TGCAGGTTAGACAGGACTTCACTGCCTTCACTCTTCTaGTGTCATCAAGGCAGAAGTCACACAGGACCTCTT | + |
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Preference number: 6 (lower is better) Translates to: CRLDRTSLPSLF*CHQGRSHTGPL Trigger: AAGAGGTCCTGTGTGACTTCTGCCTTGATGACACCAGAAGAGTGAAGGCAGTGAAGTCCTGTCTAACCTGCA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS CCA 72 bp | AATGAACTTTCTGGTTTGGGGTCACTATCAGCAAACTaGTCTCCAGCCCTGTCTTTCTCCTGGGACTCTGCT | + |
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Preference number: 6 (lower is better) Translates to: NELSGLGSLSAN*SPALSFSWDSA Trigger: AGCAGAGTCCCAGGAGAAAGACAGGGCTGGAGACCAGTTTGCTGATAGTGACCCCAAACCAGAAAGTTCATT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000578744.5 ENST00000584142.5 |
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| CDS GCA 72 bp | AGTCAGACAAGAGAACCACGCCTAGATGATTGCAGCTaGTGCAAGATTTTAACTGTTTCCTCCCTCCCAGAG | + |
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Preference number: 6 (lower is better) Translates to: SQTREPRLDDCS*CKILTVSSLPE Trigger: CTCTGGGAGGGAGGAAACAGTTAAAATCTTGCAGCAGCTGCAATCATCTAGGCGTGGTTCTCTTGTCTGACT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 72 bp | AGCCCAAGTCAGACAAGAGAACCACGCCTAGATGATTaGAGCTGCTGCAAGATTTTAACTGTTTCCTCCCTC | + |
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Preference number: 6 (lower is better) Translates to: SPSQTREPRLDD*SCCKILTVSSL Trigger: GAGGGAGGAAACAGTTAAAATCTTGCAGCAGCTGCAATCATCTAGGCGTGGTTCTCTTGTCTGACTTGGGCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENST00000336708.11 ENST00000578237.5 ENST00000649191.2 |
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| CDS GCA 72 bp | GATGAATACAAAAGTGCAGGGTGGTGGAAAGTGCCCTaGTGGGAGTGCCTGGATTCTAATTTCCACTATGTG | + |
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Preference number: 6 (lower is better) Translates to: DEYKSAGWWKVP*WECLDSNFHYV Trigger: CACATAGTGGAAATTAGAATCCAGGCACTCCCAGCAGGGCACTTTCCACCACCCTGCACTTTTGTATTCATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS CCA 72 bp | GAATACAAAAGTGCAGGGTGGTGGAAAGTGCCCTGCTaGGAGTGCCTGGATTCTAATTTCCACTATGTGCTA | + |
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Preference number: 6 (lower is better) Translates to: EYKSAGWWKVPC*ECLDSNFHYVL Trigger: TAGCACATAGTGGAAATTAGAATCCAGGCACTCCCAGCAGGGCACTTTCCACCACCCTGCACTTTTGTATTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS GCA 72 bp | GATCCCTTACTTGGTGTCTGGCCCTGTGTCAACTGTTaGATGTCAAAATTCCATTTAATCCTCACAACCACC | + |
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Preference number: 6 (lower is better) Translates to: DPLLGVWPCVNC*MSKFHLILTTT Trigger: GGTGGTTGTGAGGATTAAATGGAATTTTGACATGCAACAGTTGACACAGGGCCAGACACCAAGTAAGGGATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS CCA 72 bp | TGCCTGGATTCTAATTTCCACTATGTGCTAGTTGGCTaGGTGACCTACAACAAGCTACTTTTCATTCTTGGG | + |
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Preference number: 6 (lower is better) Translates to: CLDSNFHYVLVG*VTYNKLLFILG Trigger: CCCAAGAATGAAAAGTAGCTTGTTGTAGGTCACCCAGCCAACTAGCACATAGTGGAAATTAGAATCCAGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS CCA 72 bp | CTTTTCATTCTTGGGTGTTTCCTTCTTACGTGCAAATaGGCAGATGGATGCCTACTATTAATAAAAGCAACA | + |
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Preference number: 6 (lower is better) Translates to: LFILGCFLLTCK*ADGCLLLIKAT Trigger: TGTTGCTTTTATTAATAGTAGGCATCCATCTGCCCATTTGCACGTAAGAAGGAAACACCCAAGAATGAAAAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000416464.6 |
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| CDS CCA 72 bp | TCTCTCCTCATTAAGTCACTTTTTGCATCTGTAAAATaGGCTGACGGTAATGTGTCCTTCACAAAGAAAGTA | + |
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Preference number: 6 (lower is better) Translates to: SLLIKSLFASVK*ADGNVSFTKKV Trigger: TACTTTCTTTGTGAAGGACACATTACCGTCAGCCCATTTTACAGATGCAAAAAGTGACTTAATGAGGAGAGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000473368.1 |
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