Pregenerated sensors for TRERNA1 (Homo sapiens)
Ensembl gene IDs: ENSG00000231265Ensembl transcript IDs: ENST00000431460.1
Found 9 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | TGTTGGGAAGGTCCCGGCTCCCATGTGCTCCTCCTGGGCCAGGTCTaGGCAAAGAGAGGCCCCGAGGTGGAGGATTTCCAGGCGGAGTGG | + |
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Preference number: 5 (lower is better) Translates to: CWEGPGSHVLLLGQV*AKRGPEVEDFQAEW Trigger: CCACTCCGCCTGGAAATCCTCCACCTCGGGGCCTCTCTTTGCCCAGACCTGGCCCAGGAGGAGCACATGGGAGCCGGGACCTTCCCAACA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431460.1 |
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| CDS CCA 90 bp | ACGGCAAGGATTGTTGGGAAGGTCCCGGCTCCCATGTGCTCCTCCTaGGCCAGGTCTGGGCAAAGAGAGGCCCCGAGGTGGAGGATTTCC | + |
|
Preference number: 5 (lower is better) Translates to: TARIVGKVPAPMCSS*ARSGQREAPRWRIS Trigger: GGAAATCCTCCACCTCGGGGCCTCTCTTTGCCCAGACCTGGCCCAGGAGGAGCACATGGGAGCCGGGACCTTCCCAACAATCCTTGCCGT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431460.1 |
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| CDS CCA 90 bp | GTTGCAGGACTGGCTGAGGTTTGTGGAGCCAACGGCAAGGATTGTTaGGAAGGTCCCGGCTCCCATGTGCTCCTCCTGGGCCAGGTCTGG | + |
|
Preference number: 5 (lower is better) Translates to: VAGLAEVCGANGKDC*EGPGSHVLLLGQVW Trigger: CCAGACCTGGCCCAGGAGGAGCACATGGGAGCCGGGACCTTCCCAACAATCCTTGCCGTTGGCTCCACAAACCTCAGCCAGTCCTGCAAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431460.1 |
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| CDS TCA 90 bp | AGCAGGCATCCTGGTGGAAAAGGCATCCCAGGTTGCAGGACTGGCTaGGGTTTGTGGAGCCAACGGCAAGGATTGTTGGGAAGGTCCCGG | + |
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Preference number: 5 (lower is better) Translates to: SRHPGGKGIPGCRTG*GLWSQRQGLLGRSR Trigger: CCGGGACCTTCCCAACAATCCTTGCCGTTGGCTCCACAAACCTCAGCCAGTCCTGCAACCTGGGATGCCTTTTCCACCAGGATGCCTGCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431460.1 |
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| CDS TCA 72 bp | GTGGAGGTTGCCAGGGCTACAGCCCCTGGCCTGACGTaGAGTAGCTTTTCCCAGGCCTGGCTCCAAGACCCC | + |
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Preference number: 6 (lower is better) Translates to: VEVARATAPGLT*SSFSQAWLQDP Trigger: GGGGTCTTGGAGCCAGGCCTGGGAAAAGCTACTTCACGTCAGGCCAGGGGCTGTAGCCCTGGCAACCTCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431460.1 |
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| CDS TCA 72 bp | GCGGAGTGGAGGTTGCCAGGGCTACAGCCCCTGGCCTaGCGTGAAGTAGCTTTTCCCAGGCCTGGCTCCAAG | + |
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Preference number: 6 (lower is better) Translates to: AEWRLPGLQPLA*REVAFPRPGSK Trigger: CTTGGAGCCAGGCCTGGGAAAAGCTACTTCACGTCAGGCCAGGGGCTGTAGCCCTGGCAACCTCCACTCCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431460.1 |
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| CDS CCA 72 bp | CTGGCTGAGGTTTGTGGAGCCAACGGCAAGGATTGTTaGGAAGGTCCCGGCTCCCATGTGCTCCTCCTGGGC | + |
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Preference number: 6 (lower is better) Translates to: LAEVCGANGKDC*EGPGSHVLLLG Trigger: GCCCAGGAGGAGCACATGGGAGCCGGGACCTTCCCAACAATCCTTGCCGTTGGCTCCACAAACCTCAGCCAG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000431460.1 |
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| CDS TCA 72 bp | CCTGGTGGAAAAGGCATCCCAGGTTGCAGGACTGGCTaGGGTTTGTGGAGCCAACGGCAAGGATTGTTGGGA | + |
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Preference number: 6 (lower is better) Translates to: PGGKGIPGCRTG*GLWSQRQGLLG Trigger: TCCCAACAATCCTTGCCGTTGGCTCCACAAACCTCAGCCAGTCCTGCAACCTGGGATGCCTTTTCCACCAGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000431460.1 |
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| CDS GCA 72 bp | TCTCAAATCGGCCACGTAAAACCACCACGGCCCGCATaGCAGCTGCCTCTCCCGGCCTGGTGTTTTCATTTT | + |
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Preference number: 6 (lower is better) Translates to: SQIGHVKPPRPA*QLPLPAWCFHF Trigger: AAAATGAAAACACCAGGCCGGGAGAGGCAGCTGGCATGCGGGCCGTGGTGGTTTTACGTGGCCGATTTGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000431460.1 |
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