RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRDN (Homo sapiens)

Ensembl gene IDs: ENSG00000186439

Ensembl transcript IDs: ENST00000334268.9, ENST00000361029.8, ENST00000422596.1, ENST00000542443.5, ENST00000546248.5, ENST00000628709.2, ENST00000662930.1

Found 238 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp AAGAGAGTCATTAATCTGGTTCATGTGACACTGGCTTTCGTGGTGTaGATGTGGTCCACCAGCTTTTGGCAGAGACCAACTTCTTTCACA +
Preference number: 1 (lower is better)
Translates to: KRVINLVHVTLAFVV*MWSTSFWQRPTSFT
Trigger: TGTGAAAGAAGTTGGTCTCTGCCAAAAGCTGGTGGACCACATTCACACCACGAAAGCCAGTGTCACATGAACCAGATTAATGACTCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR TCA 90 bp TGTCACCTGAAGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTaGAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGA +
Preference number: 1 (lower is better)
Translates to: CHLKGLCKMVLSGHS*NYTLPGCPTYPIKR
Trigger: TCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCTTCAGGTGACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR TCA 90 bp ATTCAAACCCAGCAAATCTGGCACCAGCCTCTTCAGAGACTAAATTaGTCAAGTTGTGGTAAAACTCCCAGAGTTGCAAGGCATAGCCTT +
Preference number: 1 (lower is better)
Translates to: IQTQQIWHQPLQRLN*SSCGKTPRVARHSL
Trigger: AAGGCTATGCCTTGCAACTCTGGGAGTTTTACCACAACTTGATCAATTTAGTCTCTGAAGAGGCTGGTGCCAGATTTGCTGGGTTTGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
3UTR TCA 90 bp CTTGCTAGTTTAATAAACCTACTCTACAGCCCACTGCTCGGTCTTTaGCATCAGAATTCTAATATAGCCAGGTCCAAAATGCAAATGGTG +
Preference number: 1 (lower is better)
Translates to: LASLINLLYSPLLGL*HQNSNIARSKMQMV
Trigger: CACCATTTGCATTTTGGACCTGGCTATATTAGAATTCTGATGTCAAAGACCGAGCAGTGGGCTGTAGAGTAGGTTTATTAAACTAGCAAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
3UTR TCA 90 bp GTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTGTCTaGATCCAGTGCTTTCCTCCGCATGTTGTTGTCTTTCTAAAGAAG +
Preference number: 1 (lower is better)
Translates to: VIKSNRLKGYCLPPV*IQCFPPHVVVFLKK
Trigger: CTTCTTTAGAAAGACAACAACATGCGGAGGAAAGCACTGGATTCAGACAGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
3UTR GCA 90 bp GTGTATATATATATTTCAATCCTCACAATAACGCTAGGAGATCAGTaGTCTGCTTATATCATCTTAGAGATGGCAAAACTCATGAAGAGT +
Preference number: 1 (lower is better)
Translates to: VYIYISILTITLGDQ*SAYIILEMAKLMKS
Trigger: ACTCTTCATGAGTTTTGCCATCTCTAAGATGATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAAATATATATATACAC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
3UTR CAA 90 bp TTGAGACTTAGACCCTTAAACATGTCTGCTCATCACTCAATCCATTaGGCCACCCTTTCCGTCCACACCAGGCCAAAGAGCAAAATGTTT +
Preference number: 2 (lower is better)
Translates to: LRLRPLNMSAHHSIH*ATLSVHTRPKSKMF
Trigger: AAACATTTTGCTCTTTGGCCTGGTGTGGACGGAAAGGGTGGCCAAATGGATTGAGTGATGAGCAGACATGTTTAAGGGTCTAAGTCTCAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR CAA 90 bp ATACAAGCACCCCCTCCCACCGCAGCAAACACACATAACAGATTCTaGAGACTTAGACCCTTAAACATGTCTGCTCATCACTCAATCCAT +
Preference number: 2 (lower is better)
Translates to: IQAPPPTAANTHNRF*RLRPLNMSAHHSIH
Trigger: ATGGATTGAGTGATGAGCAGACATGTTTAAGGGTCTAAGTCTCAAGAATCTGTTATGTGTGTTTGCTGCGGTGGGAGGGGGTGCTTGTAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR CCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACATGGTCCACCAGCTTTTaGCAGAGACCAACTTCTTTC +
Preference number: 2 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTWSTSF*QRPTSF
Trigger: GAAAGAAGTTGGTCTCTGCCAAAAGCTGGTGGACCA...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR CAA 90 bp TCATGTGACACTGGCTTTCGTGGTGTGAATGTGGTCCACCAGCTTTaGGCAGAGACCAACTTCTTTCACAAAAGTCTCCAAAAATGCATT +
Preference number: 2 (lower is better)
Translates to: SCDTGFRGVNVVHQL*AETNFFHKSLQKCI
Trigger: AATGCATTTTTGGAGACTTTTGTGAAAGAAGTTGGTCTCTGCCAAAAGCTGGTGGACCACATTCACACCACGAAAGCCAGTGTCACATGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR TCA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATCCAGACCTGACTAATTaGATGGTGTATTTCCACTGG +
Preference number: 2 (lower is better)
Translates to: TWLVLALAISGLADGNYNPDLTN*MVYFHW
Trigger: CCAGTGGAAATACACCATTCAATTAGTCAGGTCTGG...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR CAA 90 bp ATGCACTCTCCTACCCACAAGTTTAGATTGTCACCTGAAGGGGCTTaGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCC +
Preference number: 2 (lower is better)
Translates to: MHSPTHKFRLSPEGA*QDGIVWSFLKLYTS
Trigger: GGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCTTCAGGTGACAATCTAAACTTGTGGGTAGGAGAGTGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR GCA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTAAGACCAACCCAGATTaGTGTCTCACATTCTCCCTG +
Preference number: 2 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFKTNPD*CLTFSL
Trigger: CAGGGAGAATGTGAGACAGCAATCTGGGTTGGTCTT...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
3UTR-3UTR TCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACAACGATTCACCAGACCTaGCTAATTGAATGGTGTATT +
Preference number: 2 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTTIHQT*LIEWCI
Trigger: AATACACCATTCAATTAGTCAGGTCTGGTGAATCGT...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR GCA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATTGGCACAGAAAAACATaGAAGGACAGTGATAAAGAG +
Preference number: 2 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHWHRKT*KDSDKE
Trigger: CTCTTTATCACTGTCCTTGCATGTTTTTCTGTGCCA...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
3UTR-3UTR TCA 90 bp AATTCTAATATAGCCAGGTCCAAAATGCAAATGGTGCCATCTACATTACTACCGTGTGTCCAACTTCTGTaGTCAAAGGAATTAAGAACC +
Preference number: 2 (lower is better)
Translates to: NSNIARSKMQMVPSTLLPCVQLL*SKELRT
Trigger: GGTTCTTAATTCCTTTGATCACAGAAGTTGGACACA...CGGTAGTAATGTAGATGGCACCATTTGCATTTTGGACCTGGCTATATTAGAATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422596.1
3UTR-3UTR TCA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCAGCTCAGAGATATTTTaGGCTCTAAAAGAGTATCAC +
Preference number: 2 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVSSEIF*ALKEYH
Trigger: GTGATACTCTTTTAGAGCTCAAAATATCTCTGAGCT...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR GCA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCTTGCATATTCTTAATTaGCTGAACTACTGTGGACAA +
Preference number: 2 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVLHILN*LNYCGQ
Trigger: TTGTCCACAGTAGTTCAGGCAATTAAGAATATGCAA...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR CCA 90 bp GACCAGTTACCTAAAATACAAGTAAGACATCTCACGAAGGCATTTAAGGCTAAAATGGTGTATTTCCACTaGACTGAATGTCCTAATTAT +
Preference number: 2 (lower is better)
Translates to: DQLPKIQVRHLTKAFKAKMVYFH*TECPNY
Trigger: ATAATTAGGACATTCAGTCCAGTGGAAATACACCAT...TTTAGCCTTAAATGCCTTCGTGAGATGTCTTACTTGTATTTTAGGTAACTGGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR CAA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACACATCACTCAATCCATTaGGCCACCCTTTCCGTCCAC +
Preference number: 3 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTHHSIH*ATLSVH
Trigger: GTGGACGGAAAGGGTGGCCAAATGGATTGAGTGATG...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR CAA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGTGGTCCACCAGCTTTaGGCAGAGACCAACTTCTTT +
Preference number: 3 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQVVHQL*AETNFF
Trigger: AAAGAAGTTGGTCTCTGCCAAAAGCTGGTGGACCAC...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR CAA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGTGGCTATCTCAGGCCTaGCTGATGGTAATTACAATG +
Preference number: 3 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQWLSQA*LMVITM
Trigger: CATTGTAATTACCATCAGCAAGGCCTGAGATAGCCA...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR-3UTR CAA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATAAAGACCAACCCAGATaGCTGTCTCACATTCTCCCT +
Preference number: 3 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHKDQPR*LSHILP
Trigger: AGGGAGAATGTGAGACAGCAATCTGGGTTGGTCTTT...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
3UTR TCA 72 bp TCACACAGAAAAACTGTGGAAAACATAAGCTCTCTCTaGTTTCCAGCTCAGTGTGGAGCAACTGAAGCTCTA +
Preference number: 3 (lower is better)
Translates to: SHRKTVENISSL*FPAQCGATEAL
Trigger: TAGAGCTTCAGTTGCTCCACACTGAGCTGGAAATCAGAGAGAGCTTATGTTTTCCACAGTTTTTCTGTGTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
3UTR-3UTR CAA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACATTGAAAATAAATCACTaGGCTAGTATTGGCTCTGGC +
Preference number: 3 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTLKINH*ASIGSG
Trigger: GCCAGAGCCAATACTAGCCAAGTGATTTATTTTCAA...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR TCA 72 bp AGTAATAGACTTAAAGGTTATTGTCTTCCGCCTGTCTaGATCCAGTGCTTTCCTCCGCATGTTGTTGTCTTT +
Preference number: 3 (lower is better)
Translates to: SNRLKGYCLPPV*IQCFPPHVVVF
Trigger: AAAGACAACAACATGCGGAGGAAAGCACTGGATTCAGACAGGCGGAAGACAATAACCTTTAAGTCTATTACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
3UTR-3UTR CAA 90 bp TTCACACAGAAAAACTGTGGAAAACATAAGCTCTCTCTGATTTCCAGCTCAGTGATGGTGTGGAACCAGTaGAGTTTCTGTTTAACCTTC +
Preference number: 3 (lower is better)
Translates to: FTQKNCGKHKLSLISSSVMVWNQ*SFCLTF
Trigger: GAAGGTTAAACAGAAACTCAACTGGTTCCACACCAT...CACTGAGCTGGAAATCAGAGAGAGCTTATGTTTTCCACAGTTTTTCTGTGTGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
3UTR TCA 72 bp TTAATAAACCTACTCTACAGCCCACTGCTCGGTCTTTaGCATCAGAATTCTAATATAGCCAGGTCCAAAATG +
Preference number: 3 (lower is better)
Translates to: LINLLYSPLLGL*HQNSNIARSKM
Trigger: CATTTTGGACCTGGCTATATTAGAATTCTGATGTCAAAGACCGAGCAGTGGGCTGTAGAGTAGGTTTATTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
3UTR-3UTR CAA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATAACACATAACAGATTCTaGAGACTTAGACCCTTAAAC +
Preference number: 3 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHITHNRF*RLRPLN
Trigger: GTTTAAGGGTCTAAGTCTCAAGAATCTGTTATGTGT...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR GCA 72 bp TTCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTaGTTATATCATCTTAGAGATGGCAAAACTCATGAA +
Preference number: 3 (lower is better)
Translates to: FNPHNNARRSVL*LYHLRDGKTHE
Trigger: TTCATGAGTTTTGCCATCTCTAAGATGATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR TCA 90 bp AGTTGTGGTAAAACTCCCAGAGTTGCAAGGCATAGCCTTATCTATTTGTCCCTAGCCTTCAAGGGCAGGTaGTGCCGGAGTGGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: SCGKTPRVARHSLIYLSLAFKGR*CRSGSG
Trigger: TCCAGACCCACTCCGGCATCACCTGCCCTTGAAGGC...TAGGGACAAATAGATAAGGCTATGCCTTGCAACTCTGGGAGTTTTACCACAACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR GCA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATAGACCAGAAGCCAGGCTaGAGGGGAGCTGAACGTCGT +
Preference number: 4 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIDQKPG*RGAERR
Trigger: ACGACGTTCAGCTCCCCTGCAGCCTGGCTTCTGGTC...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACACCTGGAGAATTTGCTTaGCCAGAGCTCTCTCCAGGG +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTPGEFA*PELSPG
Trigger: CCCTGGAGAGAGCTCTGGTCAAGCAAATTCTCCAGG...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp CCAAATGGTGTGGAACCAGTTGAGTTTCTGTTTAACCTTCAGCAGATAGAAACAGACCAGAAGCCAGGCTaGAGGGGAGCTGAACGTCGT +
Preference number: 4 (lower is better)
Translates to: PNGVEPVEFLFNLQQIETDQKPG*RGAERR
Trigger: ACGACGTTCAGCTCCCCTGCAGCCTGGCTTCTGGTC...TGTTTCTATCTGCTGAAGGTTAAACAGAAACTCAACTGGTTCCACACCATTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR GCA 90 bp GCTAGGAGATCAGTGCTCTGCTTATATCATCTTAGAGATGGCAAAACTCATGAAGACCAGAAGCCAGGCTaGAGGGGAGCTGAACGTCGT +
Preference number: 4 (lower is better)
Translates to: ARRSVLCLYHLRDGKTHEDQKPG*RGAERR
Trigger: ACGACGTTCAGCTCCCCTGCAGCCTGGCTTCTGGTC...TTCATGAGTTTTGCCATCTCTAAGATGATATAAGCAGAGCACTGATCTCCTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR GCA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATCTCTCCAGGGCGGTCTaGAGGAGTGAAAGGAAACTG +
Preference number: 4 (lower is better)
Translates to: TWLVLALAISGLADGNYNLSRAV*RSERKL
Trigger: CAGTTTCCTTTCACTCCTGCAGACCGCCCTGGAGAG...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR CAA 72 bp CCCCCTCCCACCGCAGCAAACACACATAACAGATTCTaGAGACTTAGACCCTTAAACATGTCTGCTCATCAC +
Preference number: 4 (lower is better)
Translates to: PPPTAANTHNRF*RLRPLNMSAHH
Trigger: GTGATGAGCAGACATGTTTAAGGGTCTAAGTCTCAAGAATCTGTTATGTGTGTTTGCTGCGGTGGGAGGGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp GTGGGCATCCTTCTGGAAGCTGAGGGTCACCAATATAGAATCTTAAGGGGACATGAGTATTTGGGGATTTaGGAACTCTGGTGGAGGGTT +
Preference number: 4 (lower is better)
Translates to: VGILLEAEGHQYRILRGHEYLGI*ELWWRV
Trigger: AACCCTCCACCAGAGTTCTCAAATCCCCAAATACTC...ATGTCCCCTTAAGATTCTATATTGGTGACCCTCAGCTTCCAGAAGGATGCCCAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR TCA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATTTCTTCAAGGGCAGGTaGTGCCGGAGTGGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHFFKGR*CRSGSG
Trigger: TCCAGACCCACTCCGGCATCACCTGCCCTTGAAGAA...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATATGTCTTCCGCCTGTCTaGATCCAGTGCTTTCCTCCG +
Preference number: 4 (lower is better)
Translates to: MSPDVIKQFGEFPCSELICLPPV*IQCFPP
Trigger: CGGAGGAAAGCACTGGATTCAGACAGGCGGAAGACA...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCGACCAGAAGCCAGGCTaGAGGGGAGCTGAACGTCGT +
Preference number: 4 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVDQKPG*RGAERR
Trigger: ACGACGTTCAGCTCCCCTGCAGCCTGGCTTCTGGTC...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCTTCTTCAAGGGCAGGTaGTGCCGGAGTGGGTCTGGA +
Preference number: 4 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVFFKGR*CRSGSG
Trigger: TCCAGACCCACTCCGGCATCACCTGCCCTTGAAGAA...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGTAAGGGAGGTGGAATaGCTGGGCTTTGTCCTGGTT +
Preference number: 4 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQVREVE*LGFVLV
Trigger: AACCAGGACAAAGCCCAGCCATTCCACCTCCCTTAC...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATAGTAAGGGAGGTGGAATaGCTGGGCTTTGTCCTGGTT +
Preference number: 4 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIVREVE*LGFVLV
Trigger: AACCAGGACAAAGCCCAGCCATTCCACCTCCCTTAC...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CCA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATAATGCCGGAGTGGGTCTaGAAGCTTGTTCTGTCGGTA +
Preference number: 4 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIMPEWV*KLVLSV
Trigger: TACCGACAGAACAAGCTTCCAGACCCACTCCGGCAT...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CCA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACAGGTGATGCCGGAGTaGGTCTGGAAGCTTGTTCTG +
Preference number: 4 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHIQVMPE*VWKLVL
Trigger: CAGAACAAGCTTCCAGACCCACTCCGGCATCACCTG...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTCAGGTGATGCCGGAGTaGGTCTGGAAGCTTGTTCTG +
Preference number: 4 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFQVMPE*VWKLVL
Trigger: CAGAACAAGCTTCCAGACCCACTCCGGCATCACCTG...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
3UTR CAA 72 bp ACTGGCTTTCGTGGTGTGAATGTGGTCCACCAGCTTTaGGCAGAGACCAACTTCTTTCACAAAAGTCTCCAA +
Preference number: 4 (lower is better)
Translates to: TGFRGVNVVHQL*AETNFFHKSLQ
Trigger: TTGGAGACTTTTGTGAAAGAAGTTGGTCTCTGCCAAAAGCTGGTGGACCACATTCACACCACGAAAGCCAGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACAGAGTATTTGGGGATTTaGGAACTCTGGTGGAGGGTT +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTEYLGI*ELWWRV
Trigger: AACCCTCCACCAGAGTTCTCAAATCCCCAAATACTC...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGCATTTCCTTCAGCAGTaGTCTCAGTCATGGTGGTCG +
Preference number: 4 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQHFLQQ*SQSWWS
Trigger: CGACCACCATGACTGAGATCACTGCTGAAGGAAATG...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp AAATGGTGCCATCTACATTACTACCGCCACTCCAGCAGCACTGTTATTAAATTAAACGATGGCAACAGCTaGCCACGTGATTATCAGGGC +
Preference number: 4 (lower is better)
Translates to: KWCHLHYYRHSSSTVIKLNDGNS*PRDYQG
Trigger: GCCCTGATAATCACGTGGTCAGCTGTTGCCATCGTT...TAATTTAATAACAGTGCTGCTGGAGTGGCGGTAGTAATGTAGATGGCACCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR TCA 90 bp CAGATAGAAACACAGAGCCAGTTCAGTCATGGTTCGCTTAGTCAATCCGTACTCAACATAAGCTCTCTCTaGTTTCCAGCTCAGTGTGGA +
Preference number: 4 (lower is better)
Translates to: QIETQSQFSHGSLSQSVLNISSL*FPAQCG
Trigger: TCCACACTGAGCTGGAAATCAGAGAGAGCTTATGTT...GAGTACGGATTGACTAAGCGAACCATGACTGAACTGGCTCTGTGTTTCTATCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422596.1
CDS-3UTR GCA 90 bp CTGTTTAACCTTCAGCAGATAGAAACACAGAGCCAGTTCAGTCATGGTTCGCTTCCTGGCTGTTTCTGCTaGTTCTTTGTTGTCCTGTTG +
Preference number: 4 (lower is better)
Translates to: LFNLQQIETQSQFSHGSLPGCFC*FFVVLL
Trigger: CAACAGGACAACAAAGAAGCAGCAGAAACAGCCAGG...AAGCGAACCATGACTGAACTGGCTCTGTGTTTCTATCTGCTGAAGGTTAAACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR GCA 90 bp AAATGCAAATGGTGCCATCTACATTACTACCGCCACTCCAGCAGCACTGTTATTTACTCTACAGCCCACTaGTCGGTCTTTGACATCAGA +
Preference number: 4 (lower is better)
Translates to: KCKWCHLHYYRHSSSTVIYSTAH*SVFDIR
Trigger: TCTGATGTCAAAGACCGAGCAGTGGGCTGTAGAGTA...AATAACAGTGCTGCTGGAGTGGCGGTAGTAATGTAGATGGCACCATTTGCATTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR GCA 90 bp CCAAATGGTGTGGAACCAGTTGAGTTTCTGTTTAACCTTCAGCAGATAGAAACAACTTTGCCTCTCCTCTaGAGAGTTCTCCCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: PNGVEPVEFLFNLQQIETTLPLL*RVLPLE
Trigger: TTCCAGGGGGAGAACTCTGCAGAGGAGAGGCAAAGT...TGTTTCTATCTGCTGAAGGTTAAACAGAAACTCAACTGGTTCCACACCATTTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR CCA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATTGGTCCACCAGCTTTTaGCAGAGACCAACTTCTTTC +
Preference number: 4 (lower is better)
Translates to: TWLVLALAISGLADGNYNWSTSF*QRPTSF
Trigger: GAAAGAAGTTGGTCTCTGCCAAAAGCTGGTGGACCA...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp GCAAATGGTGCCATCTACATTACTACCGCCACTCCAGCAGCACTGTTATTAAATGGGACCCAAATGGTGTaGAACCAGTTGAGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: ANGAIYITTATPAALLLNGTQMV*NQLSFC
Trigger: ACAGAAACTCAACTGGTTCCACACCATTTGGGTCCC...ATTTAATAACAGTGCTGCTGGAGTGGCGGTAGTAATGTAGATGGCACCATTTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR TCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTAACGATGGCAACAGCTaGCCACGTGATTATCAGGGC +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPNDGNS*PRDYQG
Trigger: GCCCTGATAATCACGTGGTCAGCTGTTGCCATCGTT...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACAGTGTTCTTTCTTTGGTaGCTTTGCTGGTTCCACATG +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTVFFLW*LCWFHM
Trigger: CATGTGGAACCAGCAAAGTCACCAAAGAAAGAACAC...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACATTAATCTGGTTCATGTaGCACTGGCTTTCGTGGTGT +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTLIWFM*HWLSWC
Trigger: ACACCACGAAAGCCAGTGTCACATGAACCAGATTAA...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp CTGTTTAACCTTCAGCAGATAGAAACACAGAGCCAGTTCAGTCATGGTTCGCTTTCAGTGTGGAGCAACTaGAGCTCTACTTTCACTTTC +
Preference number: 4 (lower is better)
Translates to: LFNLQQIETQSQFSHGSLSVWSN*SSTFTF
Trigger: GAAAGTGAAAGTAGAGCTTCAGTTGCTCCACACTGA...AAGCGAACCATGACTGAACTGGCTCTGTGTTTCTATCTGCTGAAGGTTAAACAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR GCA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATACCTGGCTGTTTCTGCTaGTTCTTTGTTGTCCTGTTG +
Preference number: 4 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIPGCFC*FFVVLL
Trigger: CAACAGGACAACAAAGAAGCAGCAGAAACAGCCAGG...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACATTTCCTGGCTGTTTCTaGTGCTTCTTTGTTGTCCTG +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTFPGCF*CFFVVL
Trigger: CAGGACAACAAAGAAGCAGCAGAAACAGCCAGGAAA...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp GTGGGCATCCTTCTGGAAGCTGAGGGTCACCAATATAGAATCTTAAGGGGACATAGTTGTGGTTGTAGATaGATTTCCTTCAGCAGTGAT +
Preference number: 4 (lower is better)
Translates to: VGILLEAEGHQYRILRGHSCGCR*ISFSSD
Trigger: ATCACTGCTGAAGGAAATGCATCTACAACCACAACT...ATGTCCCCTTAAGATTCTATATTGGTGACCCTCAGCTTCCAGAAGGATGCCCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR GCA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATCTGATGGGACTTTTCTaGTTTGTGGGAGACACATCT +
Preference number: 4 (lower is better)
Translates to: TWLVLALAISGLADGNYNLMGLF*FVGDTS
Trigger: AGATGTGTCTCCCACAAAGCAGAAAAGTCCCATCAG...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTACTTTGCCTCTCCTCTaGAGAGTTCTCCCCCTGGAA +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPTLPLL*RVLPLE
Trigger: TTCCAGGGGGAGAACTCTGCAGAGGAGAGGCAAAGT...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CCA 90 bp TCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCATCTTAGAGGTAAGGGAGGTGGAATaGCTGGGCTTTGTCCTTTCT +
Preference number: 4 (lower is better)
Translates to: SILTITLGDQCSAYIILEVREVE*LGFVLS
Trigger: AGAAAGGACAAAGCCCAGCCATTCCACCTCCCTTAC...CTCTAAGATGATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR TCA 90 bp CCAAATGGTGTGGAACCAGTTGAGTTTCTGTTTAACCTTCAGCAGATAGAAACAGAGTATTTGGGGATTTaGGAACTCTGGTGGAGGGTT +
Preference number: 4 (lower is better)
Translates to: PNGVEPVEFLFNLQQIETEYLGI*ELWWRV
Trigger: AACCCTCCACCAGAGTTCTCAAATCCCCAAATACTC...TGTTTCTATCTGCTGAAGGTTAAACAGAAACTCAACTGGTTCCACACCATTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR TCA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTGAGTATTTGGGGATTTaGGAACTCTGGTGGAGGGTT +
Preference number: 4 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFEYLGI*ELWWRV
Trigger: AACCCTCCACCAGAGTTCTCAAATCCCCAAATACTC...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp AGTTGTGGTAAAACTCCCAGAGTTGCAAGGCATAGCCTTATCTATTTGTCCCTATCACTATGTCTTCTGTaGCTGTCCTCTTCAGCACTT +
Preference number: 4 (lower is better)
Translates to: SCGKTPRVARHSLIYLSLSLCLL*LSSSAL
Trigger: AAGTGCTGAAGAGGACAGTCACAGAAGACATAGTGA...TAGGGACAAATAGATAAGGCTATGCCTTGCAACTCTGGGAGTTTTACCACAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR TCA 90 bp GACCAGTTACCTAAAATACAAGTAAGACATCTCACGAAGGCATTTAAGGCTAAAAACGATGGCAACAGCTaGCCACGTGATTATCAGGGC +
Preference number: 4 (lower is better)
Translates to: DQLPKIQVRHLTKAFKAKNDGNS*PRDYQG
Trigger: GCCCTGATAATCACGTGGTCAGCTGTTGCCATCGTT...TTTAGCCTTAAATGCCTTCGTGAGATGTCTTACTTGTATTTTAGGTAACTGGTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp ACAGTCATTCCCAGGGATGCACTGTCGAGTAGATTAAAAATTGTTATCCATGTCGGCTGGAGGAGCAGTTaGGCAATAAACTTTATGCAC +
Preference number: 4 (lower is better)
Translates to: TVIPRDALSSRLKIVIHVGWRSS*AINFMH
Trigger: GTGCATAAAGTTTATTGCTCAACTGCTCCTCCAGCC...GACATGGATAACAATTTTTAATCTACTCGACAGTGCATCCCTGGGAATGACTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp AAATGGTGCCATCTACATTACTACCGCCACTCCAGCAGCACTGTTATTAAATTATCTTTGTTGTCCTGTTaGACTTTGCCTCTCCTCTGC +
Preference number: 4 (lower is better)
Translates to: KWCHLHYYRHSSSTVIKLSLLSC*TLPLLC
Trigger: GCAGAGGAGAGGCAAAGTTCAACAGGACAACAAAGA...TAATTTAATAACAGTGCTGCTGGAGTGGCGGTAGTAATGTAGATGGCACCATTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR GCA 90 bp CAGCAGATAGAAACACAGAGCCAGTTCAGTCATGGTTCGCTTAGTCAATCCGTAAGTTGTGGTTGTAGATaGATTTCCTTCAGCAGTGAT +
Preference number: 4 (lower is better)
Translates to: QQIETQSQFSHGSLSQSVSCGCR*ISFSSD
Trigger: ATCACTGCTGAAGGAAATGCATCTACAACCACAACT...TACGGATTGACTAAGCGAACCATGACTGAACTGGCTCTGTGTTTCTATCTGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR GCA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGCTTAGCTGCTGCTTGTaGTGCAATTTTTACAGTCCC +
Preference number: 4 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQLSCCL*CNFYSP
Trigger: GGGACTGTAAAAATTGCAGCACAAGCAGCAGCTAAG...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATACTTAGCTGCTGCTTGTaGTGCAATTTTTACAGTCCC +
Preference number: 4 (lower is better)
Translates to: MSPDVIKQFGEFPCSELILSCCL*CNFYSP
Trigger: GGGACTGTAAAAATTGCAGCACAAGCAGCAGCTAAG...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCTGTCCTGGAGAATTTaGTTGACCAGAGCTCTCTCC +
Preference number: 4 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVLSWRI*LTRALS
Trigger: GGAGAGAGCTCTGGTCAAGCAAATTCTCCAGGACAG...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATAAGACCAACCCAGATTaGTGTCTCACATTCTCCCTG +
Preference number: 4 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHKTNPD*CLTFSL
Trigger: CAGGGAGAATGTGAGACAGCAATCTGGGTTGGTCTT...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CCA 90 bp GACCAGTTACCTAAAATACAAGTAAGACATCTCACGAAGGCATTTAAGGCTAAAATGCCGGAGTGGGTCTaGAAGCTTGTTCTGTCGGTA +
Preference number: 4 (lower is better)
Translates to: DQLPKIQVRHLTKAFKAKMPEWV*KLVLSV
Trigger: TACCGACAGAACAAGCTTCCAGACCCACTCCGGCAT...TTTAGCCTTAAATGCCTTCGTGAGATGTCTTACTTGTATTTTAGGTAACTGGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp ATATATATTTCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCCAGGTGATGCCGGAGTaGGTCTGGAAGCTTGTTCTG +
Preference number: 4 (lower is better)
Translates to: IYISILTITLGDQCSAYIQVMPE*VWKLVL
Trigger: CAGAACAAGCTTCCAGACCCACTCCGGCATCACCTG...GATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAAATATATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CCA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATCACCAATCTCCTCTTTaGCTCGTTCAGTTTTTGCTT +
Preference number: 4 (lower is better)
Translates to: TWLVLALAISGLADGNYNHQSPL*LVQFLL
Trigger: AAGCAAAAACTGAACGAGCCAAAGAGGAGATTGGTG...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp CCAAATGGTGTGGAACCAGTTGAGTTTCTGTTTAACCTTCAGCAGATAGAAACAGGGACCCAAATGGTGTaGAACCAGTTGAGTTTCTGT +
Preference number: 4 (lower is better)
Translates to: PNGVEPVEFLFNLQQIETGTQMV*NQLSFC
Trigger: ACAGAAACTCAACTGGTTCCACACCATTTGGGTCCC...TGTTTCTATCTGCTGAAGGTTAAACAGAAACTCAACTGGTTCCACACCATTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR CCA 90 bp TCAGTCATGGTTCGCTTAGTCAATCCGTACTCAAGAGCTGTGTCCAACTTCTGTGGTCCAAAATGCAAATaGTGCCATCTACATTACTAC +
Preference number: 4 (lower is better)
Translates to: SVMVRLVNPYSRAVSNFCGPKCK*CHLHYY
Trigger: GTAGTAATGTAGATGGCACCATTTGCATTTTGGACC...ACAGAAGTTGGACACAGCTCTTGAGTACGGATTGACTAAGCGAACCATGACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422596.1
3UTR CAA 72 bp CCTACCCACAAGTTTAGATTGTCACCTGAAGGGGCTTaGCAAGATGGTATTGTCTGGTCATTCCTGAAATTA +
Preference number: 4 (lower is better)
Translates to: PTHKFRLSPEGA*QDGIVWSFLKL
Trigger: TAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCTTCAGGTGACAATCTAAACTTGTGGGTAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR CAA 72 bp TCAAATAGGAATATGTCTACCAGTTACCCTGGATCATaGTCTTATTCCCAGCAATCTTCAGCATGTCCCCTG +
Preference number: 4 (lower is better)
Translates to: SNRNMSTSYPGS*SYSQQSSACPL
Trigger: CAGGGGACATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATATTCCTATTTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp TCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGAGTTCACTATGTCTTCTGTaGCTGTCCTCTTCAGCACTT +
Preference number: 4 (lower is better)
Translates to: SFLKLYTSRMSHIPHKESSLCLL*LSSSAL
Trigger: AAGTGCTGAAGAGGACAGTCACAGAAGACATAGTGA...ACTCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp CCAAATGGTGTGGAACCAGTTGAGTTTCTGTTTAACCTTCAGCAGATAGAAACATCACTATGTCTTCTGTaGCTGTCCTCTTCAGCACTT +
Preference number: 4 (lower is better)
Translates to: PNGVEPVEFLFNLQQIETSLCLL*LSSSAL
Trigger: AAGTGCTGAAGAGGACAGTCACAGAAGACATAGTGA...TGTTTCTATCTGCTGAAGGTTAAACAGAAACTCAACTGGTTCCACACCATTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR TCA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATTCACTATGTCTTCTGTaGCTGTCCTCTTCAGCACTT +
Preference number: 4 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHSLCLL*LSSSAL
Trigger: AAGTGCTGAAGAGGACAGTCACAGAAGACATAGTGA...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp ATATATATTTCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCAACGATGGCAACAGCTaGCCACGTGATTATCAGGGC +
Preference number: 4 (lower is better)
Translates to: IYISILTITLGDQCSAYINDGNS*PRDYQG
Trigger: GCCCTGATAATCACGTGGTCAGCTGTTGCCATCGTT...GATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAAATATATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR TCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACACGACAGAATGCATACTaGTCTTTCTGTTCATGCTTT +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTRQNAY*SFCSCF
Trigger: AAAGCATGAACAGAAAGATCAGTATGCATTCTGTCG...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATGTGTTCTTTCTTTGGTaGCTTTGCTGGTTCCACATG +
Preference number: 4 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHVFFLW*LCWFHM
Trigger: CATGTGGAACCAGCAAAGTCACCAAAGAAAGAACAC...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp CCAAATGGTGTGGAACCAGTTGAGTTTCTGTTTAACCTTCAGCAGATAGAAACAAACATAAGCTCTCTCTaGTTTCCAGCTCAGTGTGGA +
Preference number: 4 (lower is better)
Translates to: PNGVEPVEFLFNLQQIETNISSL*FPAQCG
Trigger: TCCACACTGAGCTGGAAATCAGAGAGAGCTTATGTT...TGTTTCTATCTGCTGAAGGTTAAACAGAAACTCAACTGGTTCCACACCATTTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR TCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTTCTTTGTTGTCCTGTTaGACTTTGCCTCTCCTCTGC +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPSLLSC*TLPLLC
Trigger: GCAGAGGAGAGGCAAAGTTCAACAGGACAACAAAGA...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCTGGCTGTTTCTGCTaGTTCTTTGTTGTCCTGTTG +
Preference number: 4 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVPGCFC*FFVVLL
Trigger: CAACAGGACAACAAAGAAGCAGCAGAAACAGCCAGG...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATAGCTGCTGCTTGTGCTaGAATTTTTACAGTCCCTTG +
Preference number: 4 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHSCCLC*NFYSPL
Trigger: CAAGGGACTGTAAAAATTGCAGCACAAGCAGCAGCT...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATATCCTTCTTAGCTGCTaGTTGTGCTGCAATTTTTAC +
Preference number: 4 (lower is better)
Translates to: TWLVLALAISGLADGNYNILLSC*LCCNFY
Trigger: GTAAAAATTGCAGCACAAGCAGCAGCTAAGAAGGAT...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATGTTTACTGTCCTTGTTaGTTCTGTCCTGGAGAATTT +
Preference number: 4 (lower is better)
Translates to: TWLVLALAISGLADGNYNVYCPC*FCPGEF
Trigger: AAATTCTCCAGGACAGAAGCAACAAGGACAGTAAAC...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp AATTCTAATATAGCCAGGTCCAAAATGCAAATGGTGCCATCTACATTACTACCGTACTCTACAGCCCACTaGTCGGTCTTTGACATCAGA +
Preference number: 4 (lower is better)
Translates to: NSNIARSKMQMVPSTLLPYSTAH*SVFDIR
Trigger: TCTGATGTCAAAGACCGAGCAGTGGGCTGTAGAGTA...CGGTAGTAATGTAGATGGCACCATTTGCATTTTGGACCTGGCTATATTAGAATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR CCA 90 bp ATATATATTTCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCATGCCGGAGTGGGTCTaGAAGCTTGTTCTGTCGGTA +
Preference number: 4 (lower is better)
Translates to: IYISILTITLGDQCSAYIMPEWV*KLVLSV
Trigger: TACCGACAGAACAAGCTTCCAGACCCACTCCGGCAT...GATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAAATATATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CCA 90 bp ACAGTCATTCCCAGGGATGCACTGTCGAGTAGATTAAAAATTGTTATCCATGTCAGGGGCTTTGCAAGATaGTATTGTCTGGTCATTCCT +
Preference number: 4 (lower is better)
Translates to: TVIPRDALSSRLKIVIHVRGFAR*YCLVIP
Trigger: AGGAATGACCAGACAATACCATCTTGCAAAGCCCCT...GACATGGATAACAATTTTTAATCTACTCGACAGTGCATCCCTGGGAATGACTGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp GCAAATGGTGCCATCTACATTACTACCGCCACTCCAGCAGCACTGTTATTAAATGGTCCAAAATGCAAATaGTGCCATCTACATTACTAC +
Preference number: 4 (lower is better)
Translates to: ANGAIYITTATPAALLLNGPKCK*CHLHYY
Trigger: GTAGTAATGTAGATGGCACCATTTGCATTTTGGACC...ATTTAATAACAGTGCTGCTGGAGTGGCGGTAGTAATGTAGATGGCACCATTTGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR TCA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATATTTCTGTTCATGCTTTaGCACAGCTGCTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIFLFML*HSCFLF
Trigger: AAAGAGAAAGCAGCTGTGTCAAAGCATGAACAGAAA...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGTCTTTCCTGATTCTGTaGCTTCTGATGTTCCTTTTG +
Preference number: 4 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQSFLIL*LLMFLL
Trigger: CAAAAGGAACATCAGAAGTCACAGAATCAGGAAAGA...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACATTCTTTAGCTTTCTTTaGAGCTGGTACATCTTCAAC +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTFFSFL*SWYIFN
Trigger: GTTGAAGATGTACCAGCTTCAAAGAAAGCTAAAGAA...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCAGACCTGACTAATTaGATGGTGTATTTCCACTGG +
Preference number: 4 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVPDLTN*MVYFHW
Trigger: CCAGTGGAAATACACCATTCAATTAGTCAGGTCTGG...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGTTGTCTGGTCATTCCTaGAATTATACACTTCCAGGA +
Preference number: 4 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQLSGHS*NYTLPG
Trigger: TCCTGGAAGTGTATAATTTCAGGAATGACCAGACAA...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATAAAGTTCCCGTCAAGTTaGACTTTGCAGAGTATTTGG +
Preference number: 4 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHIKFPSS*TLQSIW
Trigger: CCAAATACTCTGCAAAGTGCAACTTGACGGGAACTT...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp CCAAATGGTGTGGAACCAGTTGAGTTTCTGTTTAACCTTCAGCAGATAGAAACAAAGTTCCCGTCAAGTTaGACTTTGCAGAGTATTTGG +
Preference number: 4 (lower is better)
Translates to: PNGVEPVEFLFNLQQIETKFPSS*TLQSIW
Trigger: CCAAATACTCTGCAAAGTGCAACTTGACGGGAACTT...TGTTTCTATCTGCTGAAGGTTAAACAGAAACTCAACTGGTTCCACACCATTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR GCA 90 bp TCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCATCTTAGAGAAGTTCCCGTCAAGTTaGACTTTGCAGAGTATTTGG +
Preference number: 4 (lower is better)
Translates to: SILTITLGDQCSAYIILEKFPSS*TLQSIW
Trigger: CCAAATACTCTGCAAAGTGCAACTTGACGGGAACTT...CTCTAAGATGATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR GCA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATAAGTTCCCGTCAAGTTaGACTTTGCAGAGTATTTGG +
Preference number: 4 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHKFPSS*TLQSIW
Trigger: CCAAATACTCTGCAAAGTGCAACTTGACGGGAACTT...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACATTCTTCACTCTTTTCTaGAGTCTTAGCTTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTFFTLF*SLSFLL
Trigger: CAGAAGAAAGCTAAGACTGCAGAAAAGAGTGAAGAA...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp CAAGTTGTGGTAAAACTCCCAGAGTTGCAAGGCATAGCCTTATCTATTTGTCCCTTCTTCACTCTTTTCTaGAGTCTTAGCTTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: QVVVKLPELQGIALSICPFFTLF*SLSFLL
Trigger: CAGAAGAAAGCTAAGACTGCAGAAAAGAGTGAAGAA...GGGACAAATAGATAAGGCTATGCCTTGCAACTCTGGGAGTTTTACCACAACTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR GCA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCAGCTGCTGCTTGTGCTaGAATTTTTACAGTCCCTTG +
Preference number: 4 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVSCCLC*NFYSPL
Trigger: CAAGGGACTGTAAAAATTGCAGCACAAGCAGCAGCT...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATAATCCTTCTTAGCTGCTaGTTGTGCTGCAATTTTTAC +
Preference number: 4 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIILLSC*LCCNFY
Trigger: GTAAAAATTGCAGCACAAGCAGCAGCTAAGAAGGAT...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CCA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTCACCAATCTCCTCTTTaGCTCGTTCAGTTTTTGCTT +
Preference number: 4 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFHQSPL*LVQFLL
Trigger: AAGCAAAAACTGAACGAGCCAAAGAGGAGATTGGTG...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACAGTCTGTTTTTATAGATaGAGGTTCTCTTTCTCGATG +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTVCFYR*RFSFSM
Trigger: CATCGAGAAAGAGAACCTCCATCTATAAAAACAGAC...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp ATATATATTTCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCCAAACCCAGCAAATCTaGCACCAGCCTCTTCAGAGA +
Preference number: 4 (lower is better)
Translates to: IYISILTITLGDQCSAYIQTQQI*HQPLQR
Trigger: TCTCTGAAGAGGCTGGTGCCAGATTTGCTGGGTTTG...GATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAAATATATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CCA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTCACTTGGGTTTTGCCTaGTGTTGTGACAACGTAAAA +
Preference number: 4 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFHLGFA*CCDNVK
Trigger: TTTTACGTTGTCACAACACCAGGCAAAACCCAAGTG...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp GCTAGGAGATCAGTGCTCTGCTTATATCATCTTAGAGATGGCAAAACTCATGAAGGCAATAGAGCTTGCTaGAAAGTTTTTGTAATCCAC +
Preference number: 4 (lower is better)
Translates to: ARRSVLCLYHLRDGKTHEGNRAC*KVFVIH
Trigger: GTGGATTACAAAAACTTTTCAGCAAGCTCTATTGCC...TTCATGAGTTTTGCCATCTCTAAGATGATATAAGCAGAGCACTGATCTCCTAGC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR TCA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTGGCAATAGAGCTTGCTaGAAAGTTTTTGTAATCCAC +
Preference number: 4 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFGNRAC*KVFVIH
Trigger: GTGGATTACAAAAACTTTTCAGCAAGCTCTATTGCC...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATATTTCTGTTCATGCTTTaGCACAGCTGCTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHIFLFML*HSCFLF
Trigger: AAAGAGAAAGCAGCTGTGTCAAAGCATGAACAGAAA...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTCGACAGAATGCATACTaGTCTTTCTGTTCATGCTTT +
Preference number: 4 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFRQNAY*SFCSCF
Trigger: AAAGCATGAACAGAAAGATCAGTATGCATTCTGTCG...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp TCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGAGTTCTTCTGGTTTACCATaGGAAACAGTCTTTTCTGGT +
Preference number: 4 (lower is better)
Translates to: SFLKLYTSRMSHIPHKESSSGLP*ETVFSG
Trigger: ACCAGAAAAGACTGTTTCTCATGGTAAACCAGAAGA...ACTCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATAACGATTCACCAGACCTaGCTAATTGAATGGTGTATT +
Preference number: 4 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHITIHQT*LIEWCI
Trigger: AATACACCATTCAATTAGTCAGGTCTGGTGAATCGT...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp CAGAATTCTAATATAGCCAGGTCCAAAATGCAAATGGTGCCATCTACATTACTATCAGTGTGGAGCAACTaGAGCTCTACTTTCACTTTC +
Preference number: 4 (lower is better)
Translates to: QNSNIARSKMQMVPSTLLSVWSN*SSTFTF
Trigger: GAAAGTGAAAGTAGAGCTTCAGTTGCTCCACACTGA...TAGTAATGTAGATGGCACCATTTGCATTTTGGACCTGGCTATATTAGAATTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR GCA 90 bp CAGAATTCTAATATAGCCAGGTCCAAAATGCAAATGGTGCCATCTACATTACTATTTCCTGGCTGTTTCTaGTGCTTCTTTGTTGTCCTG +
Preference number: 4 (lower is better)
Translates to: QNSNIARSKMQMVPSTLLFPGCF*CFFVVL
Trigger: CAGGACAACAAAGAAGCAGCAGAAACAGCCAGGAAA...TAGTAATGTAGATGGCACCATTTGCATTTTGGACCTGGCTATATTAGAATTCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR GCA 90 bp TCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGAGTAGTTGTGGTTGTAGATaGATTTCCTTCAGCAGTGAT +
Preference number: 4 (lower is better)
Translates to: SFLKLYTSRMSHIPHKESSCGCR*ISFSSD
Trigger: ATCACTGCTGAAGGAAATGCATCTACAACCACAACT...ACTCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp ACAGTCATTCCCAGGGATGCACTGTCGAGTAGATTAAAAATTGTTATCCATGTCTTCATCCTTCTTAGCTaGTGCTTGTGCTGCAATTTT +
Preference number: 4 (lower is better)
Translates to: TVIPRDALSSRLKIVIHVFILLS*CLCCNF
Trigger: AAAATTGCAGCACAAGCAGCAGCTAAGAAGGATGAA...GACATGGATAACAATTTTTAATCTACTCGACAGTGCATCCCTGGGAATGACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATTTCATCCTTCTTAGCTaGTGCTTGTGCTGCAATTTT +
Preference number: 4 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHFILLS*CLCCNF
Trigger: AAAATTGCAGCACAAGCAGCAGCTAAGAAGGATGAA...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGTGACAGCTTTTACCTaGTTGAGAACTTTTTCTTCT +
Preference number: 4 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQVTAFT*LRTFSS
Trigger: AGAAGAAAAAGTTCTCAAGCAGGTAAAAGCTGTCAC...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACACAAGATGGTATTGTCTaGTCATTCCTGAAATTATAC +
Preference number: 4 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTQDGIV*SFLKLY
Trigger: GTATAATTTCAGGAATGACCAGACAATACCATCTTG...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTGTCTACCAGTTACCCTaGATCATTGTCTTATTCCCA +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPVYQLP*IIVLFP
Trigger: TGGGAATAAGACAATGATCCAGGGTAACTGGTAGAC...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCGGCAATAGAGCTTGCTaGAAAGTTTTTGTAATCCAC +
Preference number: 4 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVGNRAC*KVFVIH
Trigger: GTGGATTACAAAAACTTTTCAGCAAGCTCTATTGCC...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp AATTCTAATATAGCCAGGTCCAAAATGCAAATGGTGCCATCTACATTACTACCGGGCAATAGAGCTTGCTaGAAAGTTTTTGTAATCCAC +
Preference number: 4 (lower is better)
Translates to: NSNIARSKMQMVPSTLLPGNRAC*KVFVIH
Trigger: GTGGATTACAAAAACTTTTCAGCAAGCTCTATTGCC...CGGTAGTAATGTAGATGGCACCATTTGCATTTTGGACCTGGCTATATTAGAATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR TCA 90 bp ACAGTCATTCCCAGGGATGCACTGTCGAGTAGATTAAAAATTGTTATCCATGTCAGCTCAGAGATATTTTaGGCTCTAAAAGAGTATCAC +
Preference number: 4 (lower is better)
Translates to: TVIPRDALSSRLKIVIHVSSEIF*ALKEYH
Trigger: GTGATACTCTTTTAGAGCTCAAAATATCTCTGAGCT...GACATGGATAACAATTTTTAATCTACTCGACAGTGCATCCCTGGGAATGACTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp ACAGTCATTCCCAGGGATGCACTGTCGAGTAGATTAAAAATTGTTATCCATGTCAAGGTCACAGAGGCATaGCTTTTAGAGTTGATAAAA +
Preference number: 4 (lower is better)
Translates to: TVIPRDALSSRLKIVIHVKVTEA*LLELIK
Trigger: TTTTATCAACTCTAAAAGTCATGCCTCTGTGACCTT...GACATGGATAACAATTTTTAATCTACTCGACAGTGCATCCCTGGGAATGACTGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR TCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTTTCCCTGTTCGGAACTaGTATTCAAAGTTCAGTTAC +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPFPVRN*YSKFSY
Trigger: GTAACTGAACTTTGAATATCAGTTCCGAACAGGGAA...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATACTCTGATACATTTATaGTCAACAGGCTCCAACTTT +
Preference number: 4 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHTLIHL*STGSNF
Trigger: AAAGTTGGAGCCTGTTGATCATAAATGTATCAGAGT...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTAGTTGTGGTTGTAGATaGATTTCCTTCAGCAGTGAT +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPSCGCR*ISFSSD
Trigger: ATCACTGCTGAAGGAAATGCATCTACAACCACAACT...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTTTCTTCACTCTTTTCTaGAGTCTTAGCTTTCTTCTG +
Preference number: 4 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFFFTLF*SLSFLL
Trigger: CAGAAGAAAGCTAAGACTGCAGAAAAGAGTGAAGAA...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTTGGCACAGAAAAACATaGAAGGACAGTGATAAAGAG +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPWHRKT*KDSDKE
Trigger: CTCTTTATCACTGTCCTTGCATGTTTTTCTGTGCCA...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CCA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATATTCTCAAGCAGAGTCTaGAGTGATCTATTTATGATA +
Preference number: 4 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIFSSRV*SDLFMI
Trigger: TATCATAAATAGATCACTCCAGACTCTGCTTGAGAA...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTTTTTGCCTGGTGTTGTaGCAACGTAAAACACTATTA +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPFCLVL*QRKTLL
Trigger: TAATAGTGTTTTACGTTGTCACAACACCAGGCAAAA...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp ACAGTCATTCCCAGGGATGCACTGTCGAGTAGATTAAAAATTGTTATCCATGTCTCTTTTCTAATTTCTTaGTCCACTGTCTTGGTTGTT +
Preference number: 4 (lower is better)
Translates to: TVIPRDALSSRLKIVIHVSFLIS*STVLVV
Trigger: AACAACCAAGACAGTGGAGCAAGAAATTAGAAAAGA...GACATGGATAACAATTTTTAATCTACTCGACAGTGCATCCCTGGGAATGACTGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp TCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGAGTTTGCATATTCTTAATTaGCTGAACTACTGTGGACAA +
Preference number: 4 (lower is better)
Translates to: SFLKLYTSRMSHIPHKESLHILN*LNYCGQ
Trigger: TTGTCCACAGTAGTTCAGGCAATTAAGAATATGCAA...ACTCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR GCA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTAACAGAAATAGTTTTTaGATGTATAGGATTGGGCCA +
Preference number: 4 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFNRNSF*MYRIGP
Trigger: TGGCCCAATCCTATACATGCAAAAACTATTTCTGTT...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTGAAATTAGGATCCAGTaGTCCCACTTTATATTTCAG +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPEIRIQ*SHFIFQ
Trigger: CTGAAATATAAAGTGGGAGCACTGGATCCTAATTTC...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CCA 90 bp TCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGAGTATGGTGTATTTCCACTaGACTGAATGTCCTAATTAT +
Preference number: 4 (lower is better)
Translates to: SFLKLYTSRMSHIPHKESMVYFH*TECPNY
Trigger: ATAATTAGGACATTCAGTCCAGTGGAAATACACCAT...ACTCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTAAGAATCTGATAAGGTaGATGAGGACAGTGATAGAT +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPKNLIR*MRTVID
Trigger: ATCTATCACTGTCCTCATCCACCTTATCAGATTCTT...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR TCA 90 bp ATATATATTTCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCTTTCTGTTCATGCTTTaGCACAGCTGCTTTCTCTTT +
Preference number: 4 (lower is better)
Translates to: IYISILTITLGDQCSAYIFLFML*HSCFLF
Trigger: AAAGAGAAAGCAGCTGTGTCAAAGCATGAACAGAAA...GATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAAATATATAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR GCA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTCATATATCGACAGAATaGATACTGATCTTTCTGTTC +
Preference number: 4 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPHISTE*ILIFLF
Trigger: GAACAGAAAGATCAGTATGCATTCTGTCGATATATG...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR GCA 90 bp GACCAGTTACCTAAAATACAAGTAAGACATCTCACGAAGGCATTTAAGGCTAAACATATATCGACAGAATaGATACTGATCTTTCTGTTC +
Preference number: 4 (lower is better)
Translates to: DQLPKIQVRHLTKAFKAKHISTE*ILIFLF
Trigger: GAACAGAAAGATCAGTATGCATTCTGTCGATATATG...TTTAGCCTTAAATGCCTTCGTGAGATGTCTTACTTGTATTTTAGGTAACTGGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
3UTR CAA 72 bp GACATGAGGGAACGACAATTAAAATTATTAGCACACTaGAGCTCTAAGAGAAGCCACATCACTTTAAATGTT +
Preference number: 4 (lower is better)
Translates to: DMRERQLKLLAH*SSKRSHITLNV
Trigger: AACATTTAAAGTGATGTGGCTTCTCTTAGAGCTCAAGTGTGCTAATAATTTTAATTGTCGTTCCCTCATGTC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662930.1
3UTR CAA 72 bp TTGTCTCCATGGTATTTCTATGAGATATTAGACTGTTaGTCCCTATATCCCTATTTTACTCATGGAGAAACA +
Preference number: 4 (lower is better)
Translates to: LSPWYFYEILDC*SLYPYFTHGET
Trigger: TGTTTCTCCATGAGTAAAATAGGGATATAGGGACAAACAGTCTAATATCTCATAGAAATACCATGGAGACAA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS CCA 90 bp TGTTGTCCTGTTGAACTTTGCCTCTCCTCTGCAGAGTTCTCCCCCTaGAAACAACCTAAGCCCTTTCCAAGCAGCACTTGTGGCTCAGCT +
Preference number: 5 (lower is better)
Translates to: CCPVELCLSSAEFSP*KQPKPFPSSTCGSA
Trigger: AGCTGAGCCACAAGTGCTGCTTGGAAAGGGCTTAGGTTGTTTCCAGGGGGAGAACTCTGCAGAGGAGAGGCAAAGTTCAACAGGACAACA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000546248.5
CDS GCA 90 bp GGAGAGGTAGGGAATGGGAAGGAGGCTAGTCCTCAGGTCATTCCATaGATTGATTTGCCCTTTGATGTACTGGCAGTAATAGCTGGAGTT +
Preference number: 5 (lower is better)
Translates to: GEVGNGKEASPQVIP*IDLPFDVLAVIAGV
Trigger: AACTCCAGCTATTACTGCCAGTACATCAAAGGGCAAATCAATGCATGGAATGACCTGAGGACTAGCCTCCTTCCCATTCCCTACCTCTCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000361029.8
CDS GCA 90 bp ATGTGCTTCTTGCCCAATATTCTCTTAGAACCTCCGGCAGCCTCCTaGTCTGAATGTTTACCTTTCTGTTCATGCTTTGACACAGCTGCT +
Preference number: 5 (lower is better)
Translates to: MCFLPNILLEPPAAS*SECLPFCSCFDTAA
Trigger: AGCAGCTGTGTCAAAGCATGAACAGAAAGGTAAACATTCAGAGCAGGAGGCTGCCGGAGGTTCTAAGAGAATATTGGGCAAGAAGCACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546248.5
CDS CCA 90 bp AAGTCAGTTGAAAAGTTCCCGTCAAGTTGCACTTTGCAGAGTATTTaGGGATTTGAGAACTCTGGTGGAGGGTTCTGTGTCAAAACCTGG +
Preference number: 5 (lower is better)
Translates to: KSVEKFPSSCTLQSI*GFENSGGGFCVKTW
Trigger: CCAGGTTTTGACACAGAACCCTCCACCAGAGTTCTCAAATCCCCAAATACTCTGCAAAGTGCAACTTGACGGGAACTTTTCAACTGACTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000334268.9
ENST00000542443.5
ENST00000546248.5
ENST00000628709.2
ENST00000662930.1
CDS-3UTR CAA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATAGAGTATTTGGGGATTaGAGAACTCTGGTGGAGGGT +
Preference number: 5 (lower is better)
Translates to: TWLVLALAISGLADGNYNRVFGD*RTLVEG
Trigger: ACCCTCCACCAGAGTTCTCAAATCCCCAAATACTCT...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp AGGGACCCAAATGGTGTGGAACCAGTTGAGTTTCTGTTTAACCTTCAGCAGATAAGAGTATTTGGGGATTaGAGAACTCTGGTGGAGGGT +
Preference number: 5 (lower is better)
Translates to: RDPNGVEPVEFLFNLQQIRVFGD*RTLVEG
Trigger: ACCCTCCACCAGAGTTCTCAAATCCCCAAATACTCT...TATCTGCTGAAGGTTAAACAGAAACTCAACTGGTTCCACACCATTTGGGTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR CAA 90 bp CAAGTTGTGGTAAAACTCCCAGAGTTGCAAGGCATAGCCTTATCTATTTGTCCCAGAGTATTTGGGGATTaGAGAACTCTGGTGGAGGGT +
Preference number: 5 (lower is better)
Translates to: QVVVKLPELQGIALSICPRVFGD*RTLVEG
Trigger: ACCCTCCACCAGAGTTCTCAAATCCCCAAATACTCT...GGGACAAATAGATAAGGCTATGCCTTGCAACTCTGGGAGTTTTACCACAACTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CAA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATTGTGGAGGTTTAGGCTaGACTTCTTTGCCTGCTTTG +
Preference number: 5 (lower is better)
Translates to: TWLVLALAISGLADGNYNCGGLG*TSLPAL
Trigger: CAAAGCAGGCAAAGAAGTCAAGCCTAAACCTCCACA...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATTGGGACTTTTCTGCTTaGTGGGAGACACATCTTCAG +
Preference number: 5 (lower is better)
Translates to: TWLVLALAISGLADGNYNWDFSA*WETHLQ
Trigger: CTGAAGATGTGTCTCCCACAAAGCAGAAAAGTCCCA...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp ACAGTCATTCCCAGGGATGCACTGTCGAGTAGATTAAAAATTGTTATCCATGTCTCCTGGAGAATTTGCTaGACCAGAGCTCTCTCCAGG +
Preference number: 5 (lower is better)
Translates to: TVIPRDALSSRLKIVIHVSWRIC*TRALSR
Trigger: CCTGGAGAGAGCTCTGGTCAAGCAAATTCTCCAGGA...GACATGGATAACAATTTTTAATCTACTCGACAGTGCATCCCTGGGAATGACTGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACAGGCACAGATCCATTTTaGCTGTCTATCACAGTTGTG +
Preference number: 5 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTGTDPF*LSITVV
Trigger: CACAACTGTGATAGACAGCAAAAATGGATCTGTGCC...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp CTGTTTAACCTTCAGCAGATAGAAACACAGAGCCAGTTCAGTCATGGTTCGCTTGGCACAGATCCATTTTaGCTGTCTATCACAGTTGTG +
Preference number: 5 (lower is better)
Translates to: LFNLQQIETQSQFSHGSLGTDPF*LSITVV
Trigger: CACAACTGTGATAGACAGCAAAAATGGATCTGTGCC...AAGCGAACCATGACTGAACTGGCTCTGTGTTTCTATCTGCTGAAGGTTAAACAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR CAA 90 bp CAAGTTGTGGTAAAACTCCCAGAGTTGCAAGGCATAGCCTTATCTATTTGTCCCGGCACAGATCCATTTTaGCTGTCTATCACAGTTGTG +
Preference number: 5 (lower is better)
Translates to: QVVVKLPELQGIALSICPGTDPF*LSITVV
Trigger: CACAACTGTGATAGACAGCAAAAATGGATCTGTGCC...GGGACAAATAGATAAGGCTATGCCTTGCAACTCTGGGAGTTTTACCACAACTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CAA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACAACAGCTGCTTTCTCTTaGTCCTCCTTTTCTTTGGGT +
Preference number: 5 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTTAAFS*SSFSLG
Trigger: ACCCAAAGAAAAGGAGGACAAAGAGAAAGCAGCTGT...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACACTGAGTGTTCTTTCTTaGGTGACTTTGCTGGTTCCA +
Preference number: 5 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTLSVLS*VTLLVP
Trigger: TGGAACCAGCAAAGTCACCAAAGAAAGAACACTCAG...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATATCTGTCCTGGAGAATTaGCTTGACCAGAGCTCTCTC +
Preference number: 5 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHISVLEN*LDQSSL
Trigger: GAGAGAGCTCTGGTCAAGCAAATTCTCCAGGACAGA...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATAATCACTTGGCTAGTATaGGCTCTGGCTATCTCAGGC +
Preference number: 5 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHIITWLV*ALAISG
Trigger: GCCTGAGATAGCCAGAGCCAATACTAGCCAAGTGAT...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp TCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGAGTGTGGTCCACCAGCTTTaGGCAGAGACCAACTTCTTT +
Preference number: 5 (lower is better)
Translates to: SFLKLYTSRMSHIPHKESVVHQL*AETNFF
Trigger: AAAGAAGTTGGTCTCTGCCAAAAGCTGGTGGACCAC...ACTCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp TCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGAGTTCACCTGAAGGGGCTTaGCAAGATGGTATTGTCTGG +
Preference number: 5 (lower is better)
Translates to: SFLKLYTSRMSHIPHKESSPEGA*QDGIVW
Trigger: CCAGACAATACCATCTTGCAAAGCCCCTTCAGGTGA...ACTCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp CAGATAGAAACACAGAGCCAGTTCAGTCATGGTTCGCTTAGTCAATCCGTACTCATGGTGTGGAACCAGTaGAGTTTCTGTTTAACCTTC +
Preference number: 5 (lower is better)
Translates to: QIETQSQFSHGSLSQSVLMVWNQ*SFCLTF
Trigger: GAAGGTTAAACAGAAACTCAACTGGTTCCACACCAT...GAGTACGGATTGACTAAGCGAACCATGACTGAACTGGCTCTGTGTTTCTATCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000422596.1
CDS-3UTR CAA 90 bp CAGCAGATAGAAACACAGAGCCAGTTCAGTCATGGTTCGCTTAGTCAATCCGTAATGGTGTGGAACCAGTaGAGTTTCTGTTTAACCTTC +
Preference number: 5 (lower is better)
Translates to: QQIETQSQFSHGSLSQSVMVWNQ*SFCLTF
Trigger: GAAGGTTAAACAGAAACTCAACTGGTTCCACACCAT...TACGGATTGACTAAGCGAACCATGACTGAACTGGCTCTGTGTTTCTATCTGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR CAA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATAAAAGACCAACCCAGATaGCTGTCTCACATTCTCCCT +
Preference number: 5 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIKDQPR*LSHILP
Trigger: AGGGAGAATGTGAGACAGCAATCTGGGTTGGTCTTT...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACAAAAGTTCCCGTCAAGTaGCACTTTGCAGAGTATTTG +
Preference number: 5 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTKVPVK*HFAEYL
Trigger: CAAATACTCTGCAAAGTGCAACTTGACGGGAACTTT...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp GCAAATGGTGCCATCTACATTACTACCGCCACTCCAGCAGCACTGTTATTAAATAAAGTTCCCGTCAAGTaGCACTTTGCAGAGTATTTG +
Preference number: 5 (lower is better)
Translates to: ANGAIYITTATPAALLLNKVPVK*HFAEYL
Trigger: CAAATACTCTGCAAAGTGCAACTTGACGGGAACTTT...ATTTAATAACAGTGCTGCTGGAGTGGCGGTAGTAATGTAGATGGCACCATTTGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000542443.5
CDS-3UTR CAA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATCTTCTTAGCTGCTGCTaGTGCTGCAATTTTTACAGT +
Preference number: 5 (lower is better)
Translates to: TWLVLALAISGLADGNYNLLSCC*CCNFYS
Trigger: ACTGTAAAAATTGCAGCACAAGCAGCAGCTAAGAAG...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATACTGAGTGTTCTTTCTTaGGTGACTTTGCTGGTTCCA +
Preference number: 5 (lower is better)
Translates to: MSPDVIKQFGEFPCSELILSVLS*VTLLVP
Trigger: TGGAACCAGCAAAGTCACCAAAGAAAGAACACTCAG...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATGCACCAATCTCCTCTTaGGCTCGTTCAGTTTTTGCT +
Preference number: 5 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHAPISS*ARSVFA
Trigger: AGCAAAAACTGAACGAGCCAAAGAGGAGATTGGTGC...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp ACTTGGCTAGTATTGGCTCTGGCTATCTCAGGCCTTGCTGATGGTAATTACAATTGTTTACTGTCCTTGTaGCTTCTGTCCTGGAGAATT +
Preference number: 5 (lower is better)
Translates to: TWLVLALAISGLADGNYNCLLSL*LLSWRI
Trigger: AATTCTCCAGGACAGAAGCAACAAGGACAGTAAACA...ATTGTAATTACCATCAGCAAGGCCTGAGATAGCCAGAGCCAATACTAGCCAAGT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp TCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGAGTACCCACAAGTTTAGATaGTCACCTGAAGGGGCTTTG +
Preference number: 5 (lower is better)
Translates to: SFLKLYTSRMSHIPHKESTHKFR*SPEGAL
Trigger: CAAAGCCCCTTCAGGTGACAATCTAAACTTGTGGGT...ACTCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTAGAGTATTTGGGGATTaGAGAACTCTGGTGGAGGGT +
Preference number: 5 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPRVFGD*RTLVEG
Trigger: ACCCTCCACCAGAGTTCTCAAATCCCCAAATACTCT...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp AGTTGTGGTAAAACTCCCAGAGTTGCAAGGCATAGCCTTATCTATTTGTCCCTAAAAGTTCCCGTCAAGTaGCACTTTGCAGAGTATTTG +
Preference number: 5 (lower is better)
Translates to: SCGKTPRVARHSLIYLSLKVPVK*HFAEYL
Trigger: CAAATACTCTGCAAAGTGCAACTTGACGGGAACTTT...TAGGGACAAATAGATAAGGCTATGCCTTGCAACTCTGGGAGTTTTACCACAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CAA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTGGCACAGATCCATTTTaGCTGTCTATCACAGTTGTG +
Preference number: 5 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFGTDPF*LSITVV
Trigger: CACAACTGTGATAGACAGCAAAAATGGATCTGTGCC...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp CCAGGATGTCCCACATACCCCATAAAGAGAGTCATTAATCTGGTTCATGTGACAACAGCTTTTACCTGCTaGAGAACTTTTTCTTCTGGT +
Preference number: 5 (lower is better)
Translates to: PGCPTYPIKRVINLVHVTTAFTC*RTFSSG
Trigger: ACCAGAAGAAAAAGTTCTCAAGCAGGTAAAAGCTGT...TGTCACATGAACCAGATTAATGACTCTCTTTATGGGGTATGTGGGACATCCTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCGTGTGTTTACTGTCCTaGTTGCTTCTGTCCTGGAGA +
Preference number: 5 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVVCLLS*LLLSWR
Trigger: TCTCCAGGACAGAAGCAACAAGGACAGTAAACACAC...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp CAGCAGATAGAAACACAGAGCCAGTTCAGTCATGGTTCGCTTAGTCAATCCGTAAGAAATATATTCAGGTaGATAATCTCCAGCTCAGTC +
Preference number: 5 (lower is better)
Translates to: QQIETQSQFSHGSLSQSVRNIFR*IISSSV
Trigger: GACTGAGCTGGAGATTATCAACCTGAATATATTTCT...TACGGATTGACTAAGCGAACCATGACTGAACTGGCTCTGTGTTTCTATCTGCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR CAA 90 bp GCTAGGAGATCAGTGCTCTGCTTATATCATCTTAGAGATGGCAAAACTCATGAAGTAAAACTCCCAGAGTaGCAAGGCATAGCCTTATCT +
Preference number: 5 (lower is better)
Translates to: ARRSVLCLYHLRDGKTHEVKLPE*QGIALS
Trigger: AGATAAGGCTATGCCTTGCAACTCTGGGAGTTTTAC...TTCATGAGTTTTGCCATCTCTAAGATGATATAAGCAGAGCACTGATCTCCTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CAA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTACCATTTCCAGTCTCTaGTCCACTAGAGGAGACATT +
Preference number: 5 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFTISSL*STRGDI
Trigger: AATGTCTCCTCTAGTGGACAAGAGACTGGAAATGGT...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTACAGCTGCTTTCTCTTaGTCCTCCTTTTCTTTGGGT +
Preference number: 5 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPTAAFS*SSFSLG
Trigger: ACCCAAAGAAAAGGAGGACAAAGAGAAAGCAGCTGT...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATATGGCTCGTTCAGTTTTaGCTTTTACTTGTTTGTCAC +
Preference number: 5 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIWLVQF*LLLVCH
Trigger: GTGACAAACAAGTAAAAGCAAAAACTGAACGAGCCA...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp GACCAGTTACCTAAAATACAAGTAAGACATCTCACGAAGGCATTTAAGGCTAAAGCACCAATCTCCTCTTaGGCTCGTTCAGTTTTTGCT +
Preference number: 5 (lower is better)
Translates to: DQLPKIQVRHLTKAFKAKAPISS*ARSVFA
Trigger: AGCAAAAACTGAACGAGCCAAAGAGGAGATTGGTGC...TTTAGCCTTAAATGCCTTCGTGAGATGTCTTACTTGTATTTTAGGTAACTGGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp CTGTTTAACCTTCAGCAGATAGAAACACAGAGCCAGTTCAGTCATGGTTCGCTTAGAAATATATTCAGGTaGATAATCTCCAGCTCAGTC +
Preference number: 5 (lower is better)
Translates to: LFNLQQIETQSQFSHGSLRNIFR*IISSSV
Trigger: GACTGAGCTGGAGATTATCAACCTGAATATATTTCT...AAGCGAACCATGACTGAACTGGCTCTGTGTTTCTATCTGCTGAAGGTTAAACAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000422596.1
ENST00000542443.5
CDS-3UTR CAA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTAGTTACCCTGGATCATaGTCTTATTCCCAGCAATCT +
Preference number: 5 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFSYPGS*SYSQQS
Trigger: AGATTGCTGGGAATAAGACAATGATCCAGGGTAACT...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTGAAATTTCAGACCTCTaGGGAGAATGGTTGAAGTCA +
Preference number: 5 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFEISDL*GEWLKS
Trigger: TGACTTCAACCATTCTCCCAAGAGGTCTGAAATTTC...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp GACCAGTTACCTAAAATACAAGTAAGACATCTCACGAAGGCATTTAAGGCTAAACCGTCAAGTTGCACTTaGCAGAGTATTTGGGGATTT +
Preference number: 5 (lower is better)
Translates to: DQLPKIQVRHLTKAFKAKPSSCT*QSIWGF
Trigger: AAATCCCCAAATACTCTGCAAAGTGCAACTTGACGG...TTTAGCCTTAAATGCCTTCGTGAGATGTCTTACTTGTATTTTAGGTAACTGGTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTAAAGTTCCCGTCAAGTaGCACTTTGCAGAGTATTTG +
Preference number: 5 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPKVPVK*HFAEYL
Trigger: CAAATACTCTGCAAAGTGCAACTTGACGGGAACTTT...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGTACTTCTTTTACTTTaGCAGCTGTTTGCTTCACTT +
Preference number: 5 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQVLLLL*QLFASL
Trigger: AAGTGAAGCAAACAGCTGCAAAAGTAAAAGAAGTAC...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp ATGTCCCCTGATGTAATTAAACAGTTTGGGGAGTTTCCCTGTTCGGAACTGATAGTACTTCTTTTACTTTaGCAGCTGTTTGCTTCACTT +
Preference number: 5 (lower is better)
Translates to: MSPDVIKQFGEFPCSELIVLLLL*QLFASL
Trigger: AAGTGAAGCAAACAGCTGCAAAAGTAAAAGAAGTAC...TATCAGTTCCGAACAGGGAAACTCCCCAAACTGTTTAATTACATCAGGGGACAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTTTTACAGTCCCTTGTTaGGTTTCAGAAGCTTTTCCC +
Preference number: 5 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPFTVPC*VSEAFP
Trigger: GGGAAAAGCTTCTGAAACCAAACAAGGGACTGTAAA...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp CATGCAAGGACAGTGATAAAGAGTAATAGACTTAAAGGTTATTGTCTTCCGCCTCTTCTTAGCTGCTGCTaGTGCTGCAATTTTTACAGT +
Preference number: 5 (lower is better)
Translates to: HARTVIKSNRLKGYCLPPLLSCC*CCNFYS
Trigger: ACTGTAAAAATTGCAGCACAAGCAGCAGCTAAGAAG...AGGCGGAAGACAATAACCTTTAAGTCTATTACTCTTTATCACTGTCCTTGCATG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp ATATGTCTACCAGTTACCCTGGATCATTGTCTTATTCCCAGCAATCTTCAGCATCTTTCTTTGGTGACTTaGCTGGTTCCACATGTTTTT +
Preference number: 5 (lower is better)
Translates to: ICLPVTLDHCLIPSNLQHLSLVT*LVPHVF
Trigger: AAAAACATGTGGAACCAGCAAAGTCACCAAAGAAAG...ATGCTGAAGATTGCTGGGAATAAGACAATGATCCAGGGTAACTGGTAGACATAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp AGGGGCTTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGTTACTTGTTTGTCACTaGGAACTGAGTGTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: RGFARWYCLVIPEIIHFQLLVCH*ELSVLS
Trigger: AGAAAGAACACTCAGTTCCAAGTGACAAACAAGTAA...CTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAAGCCCCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATATGGCTCGTTCAGTTTTaGCTTTTACTTGTTTGTCAC +
Preference number: 5 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHIWLVQF*LLLVCH
Trigger: GTGACAAACAAGTAAAAGCAAAAACTGAACGAGCCA...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp ACAGTCATTCCCAGGGATGCACTGTCGAGTAGATTAAAAATTGTTATCCATGTCCTTCTGATGTTCCTTTaGGAGTTGGTTTTGGTTTGT +
Preference number: 5 (lower is better)
Translates to: TVIPRDALSSRLKIVIHVLLMFL*ELVLVC
Trigger: ACAAACCAAAACCAACTCCAAAAGGAACATCAGAAG...GACATGGATAACAATTTTTAATCTACTCGACAGTGCATCCCTGGGAATGACTGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATATTGAAAATAAATCACTaGGCTAGTATTGGCTCTGGC +
Preference number: 5 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHILKINH*ASIGSG
Trigger: GCCAGAGCCAATACTAGCCAAGTGATTTATTTTCAA...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp ATATATATTTCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCTGGAATGGCTGGGCTTaGTCCTTTCTGTTCATGCTT +
Preference number: 5 (lower is better)
Translates to: IYISILTITLGDQCSAYIWNGWA*SFLFML
Trigger: AAGCATGAACAGAAAGGACAAAGCCCAGCCATTCCA...GATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAAATATATAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CAA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTAAATTATTAGCACACTaGAGCTCTAAGAGAAGCCAC +
Preference number: 5 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFKLLAH*SSKRSH
Trigger: GTGGCTTCTCTTAGAGCTCAAGTGTGCTAATAATTT...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp ATATATATTTCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCACAGCTGCTTTCTCTTaGTCCTCCTTTTCTTTGGGT +
Preference number: 5 (lower is better)
Translates to: IYISILTITLGDQCSAYITAAFS*SSFSLG
Trigger: ACCCAAAGAAAAGGAGGACAAAGAGAAAGCAGCTGT...GATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAAATATATAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CAA 90 bp GACCAGTTACCTAAAATACAAGTAAGACATCTCACGAAGGCATTTAAGGCTAAATTTACAGTCCCTTGTTaGGTTTCAGAAGCTTTTCCC +
Preference number: 5 (lower is better)
Translates to: DQLPKIQVRHLTKAFKAKFTVPC*VSEAFP
Trigger: GGGAAAAGCTTCTGAAACCAAACAAGGGACTGTAAA...TTTAGCCTTAAATGCCTTCGTGAGATGTCTTACTTGTATTTTAGGTAACTGGTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp TTTGCAAGATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCTTTCTTTGGTGACTTaGCTGGTTCCACATGTTTTT +
Preference number: 5 (lower is better)
Translates to: FARWYCLVIPEIIHFQDVLSLVT*LVPHVF
Trigger: AAAAACATGTGGAACCAGCAAAGTCACCAAAGAAAG...GACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATCTTGCAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp TGTTTGCCCTATACAACATCTTCTCAGATGGGCAGATCAGGGATAATTACCTTTTTACTTGTTTGTCACTaGGAACTGAGTGTTCTTTCT +
Preference number: 5 (lower is better)
Translates to: CLPYTTSSQMGRSGIITFLLVCH*ELSVLS
Trigger: AGAAAGAACACTCAGTTCCAAGTGACAAACAAGTAA...AAAGGTAATTATCCCTGATCTGCCCATCTGAGAAGATGTTGTATAGGGCAAACA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000662930.1
CDS-3UTR CAA 90 bp GATGGTATTGTCTGGTCATTCCTGAAATTATACACTTCCAGGATGTCCCACATAATGTTCCTTTTGGAGTaGGTTTTGGTTTGTCTGTTT +
Preference number: 5 (lower is better)
Translates to: DGIVWSFLKLYTSRMSHIMFLLE*VLVCLF
Trigger: AAACAGACAAACCAAAACCAACTCCAAAAGGAACAT...TATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGACCAGACAATACCATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp TCATTCCTGAAATTATACACTTCCAGGATGTCCCACATACCCCATAAAGAGAGTACACATAACAGATTCTaGAGACTTAGACCCTTAAAC +
Preference number: 5 (lower is better)
Translates to: SFLKLYTSRMSHIPHKESTHNRF*RLRPLN
Trigger: GTTTAAGGGTCTAAGTCTCAAGAATCTGTTATGTGT...ACTCTCTTTATGGGGTATGTGGGACATCCTGGAAGTGTATAATTTCAGGAATGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp TCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCATCTTAGAGTACATAAAACAGTATTaGTGTGTGTGTGAGTGTGTG +
Preference number: 5 (lower is better)
Translates to: SILTITLGDQCSAYIILEYIKQY*CVCECV
Trigger: CACACACTCACACACACACAAATACTGTTTTATGTA...CTCTAAGATGATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS-3UTR CAA 90 bp GACCAGTTACCTAAAATACAAGTAAGACATCTCACGAAGGCATTTAAGGCTAAAGGAGTTGGTTTTGGTTaGTCTGTTTTTATAGATGGA +
Preference number: 5 (lower is better)
Translates to: DQLPKIQVRHLTKAFKAKGVGFG*SVFIDG
Trigger: TCCATCTATAAAAACAGACAAACCAAAACCAACTCC...TTTAGCCTTAAATGCCTTCGTGAGATGTCTTACTTGTATTTTAGGTAACTGGTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS-3UTR CAA 90 bp CAGAATTCTAATATAGCCAGGTCCAAAATGCAAATGGTGCCATCTACATTACTACTGATTGTTGAAGAATaGGCTGACCAATCTTTAGTT +
Preference number: 5 (lower is better)
Translates to: QNSNIARSKMQMVPSTLLLIVEE*ADQSLV
Trigger: AACTAAAGATTGGTCAGCCAATTCTTCAACAATCAG...TAGTAATGTAGATGGCACCATTTGCATTTTGGACCTGGCTATATTAGAATTCTG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000422596.1
CDS-3UTR CAA 90 bp ATATATATTTCAATCCTCACAATAACGCTAGGAGATCAGTGCTCTGCTTATATCGTACTTCTTTTACTTTaGCAGCTGTTTGCTTCACTT +
Preference number: 5 (lower is better)
Translates to: IYISILTITLGDQCSAYIVLLLL*QLFASL
Trigger: AAGTGAAGCAAACAGCTGCAAAAGTAAAAGAAGTAC...GATATAAGCAGAGCACTGATCTCCTAGCGTTATTGTGAGGATTGAAATATATAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS CCA 72 bp ACTTGCCTTCAAGGGCAGGTGATGCCGGAGTGGGTCTaGAAGCTTGTTCTGTCGGTAAGGGAGGTGGAATGG +
Preference number: 6 (lower is better)
Translates to: TCLQGQVMPEWV*KLVLSVREVEW
Trigger: CCATTCCACCTCCCTTACCGACAGAACAAGCTTCCAGACCCACTCCGGCATCACCTGCCCTTGAAGGCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS CCA 72 bp CCCCTTCTTTTTCTTCAAGGGCAGGTGATGCCGGAGTaGGTCTGGAAGCTTGTTCTGTCGGTAAGGGAGGTG +
Preference number: 6 (lower is better)
Translates to: PLLFLQGQVMPE*VWKLVLSVREV
Trigger: CACCTCCCTTACCGACAGAACAAGCTTCCAGACCCACTCCGGCATCACCTGCCCTTGAAGAAAAAGAAGGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000334268.9
ENST00000662930.1
CDS GCA 72 bp CCACGTGATTATCAGGGCAATGACCAGAAGCCAGGCTaGAGGGGAGCTGAACGTCGTCACTATGTCTTCTGT +
Preference number: 6 (lower is better)
Translates to: PRDYQGNDQKPG*RGAERRHYVFC
Trigger: ACAGAAGACATAGTGACGACGTTCAGCTCCCCTGCAGCCTGGCTTCTGGTCATTGCCCTGATAATCACGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000334268.9
ENST00000542443.5
ENST00000546248.5
ENST00000628709.2
ENST00000662930.1
CDS CCA 72 bp CTTTTTCTTCAAGGGCAGGTGATGCCGGAGTGGGTCTaGAAGCTTGTTCTGTCGGTAAGGGAGGTGGAATGG +
Preference number: 6 (lower is better)
Translates to: LFLQGQVMPEWV*KLVLSVREVEW
Trigger: CCATTCCACCTCCCTTACCGACAGAACAAGCTTCCAGACCCACTCCGGCATCACCTGCCCTTGAAGAAAAAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000334268.9
ENST00000662930.1
CDS CCA 72 bp AAAAGTACTTGCCTTCAAGGGCAGGTGATGCCGGAGTaGGTCTGGAAGCTTGTTCTGTCGGTAAGGGAGGTG +
Preference number: 6 (lower is better)
Translates to: KSTCLQGQVMPE*VWKLVLSVREV
Trigger: CACCTCCCTTACCGACAGAACAAGCTTCCAGACCCACTCCGGCATCACCTGCCCTTGAAGGCAAGTACTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000628709.2
CDS CCA 72 bp GTCTGGAAGCTTGTTCTGTCGGTAAGGGAGGTGGAATaGCTGGGCTTTGTCCTGGTTTTAAATCCCCATGGA +
Preference number: 6 (lower is better)
Translates to: VWKLVLSVREVE*LGFVLVLNPHG
Trigger: TCCATGGGGATTTAAAACCAGGACAAAGCCCAGCCATTCCACCTCCCTTACCGACAGAACAAGCTTCCAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000334268.9
ENST00000662930.1
CDS GCA 72 bp AACCTGGGGGCTCTTCGTTTTCCTGGCTGTTTCTGCTaGTTCTTTGTTGTCCTGTTGAACTTTGCCTCTCCT +
Preference number: 6 (lower is better)
Translates to: NLGALRFPGCFC*FFVVLLNFASP
Trigger: AGGAGAGGCAAAGTTCAACAGGACAACAAAGAAGCAGCAGAAACAGCCAGGAAAACGAAGAGCCCCCAGGTT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENST00000334268.9
ENST00000542443.5
ENST00000546248.5
ENST00000662930.1
CDS CAA 90 bp GGGAATGGGAAGGAGGCTAGTCCTCAGGTCATTCCATGCATTGATTaGCCCTTTGATGTACTGGCAGTAATAGCTGGAGTTTCTGATCCC +
Preference number: 6 (lower is better)
Translates to: GNGKEASPQVIPCID*PFDVLAVIAGVSDP
Trigger: GGGATCAGAAACTCCAGCTATTACTGCCAGTACATCAAAGGGCAAATCAATGCATGGAATGACCTGAGGACTAGCCTCCTTCCCATTCCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000361029.8
CDS TCA 72 bp CCCGTCAAGTTGCACTTTGCAGAGTATTTGGGGATTTaGGAACTCTGGTGGAGGGTTCTGTGTCAAAACCTG +
Preference number: 6 (lower is better)
Translates to: PVKLHFAEYLGI*ELWWRVLCQNL
Trigger: CAGGTTTTGACACAGAACCCTCCACCAGAGTTCTCAAATCCCCAAATACTCTGCAAAGTGCAACTTGACGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000334268.9
ENST00000542443.5
ENST00000546248.5
ENST00000628709.2
ENST00000662930.1
CDS GCA 72 bp GGGAATGGGAAGGAGGCTAGTCCTCAGGTCATTCCATaGATTGATTTGCCCTTTGATGTACTGGCAGTAATA +
Preference number: 6 (lower is better)
Translates to: GNGKEASPQVIP*IDLPFDVLAVI
Trigger: TATTACTGCCAGTACATCAAAGGGCAAATCAATGCATGGAATGACCTGAGGACTAGCCTCCTTCCCATTCCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000361029.8
CDS CAA 72 bp TCCCGTCAAGTTGCACTTTGCAGAGTATTTGGGGATTaGAGAACTCTGGTGGAGGGTTCTGTGTCAAAACCT +
Preference number: 6 (lower is better)
Translates to: SRQVALCRVFGD*RTLVEGSVSKP
Trigger: AGGTTTTGACACAGAACCCTCCACCAGAGTTCTCAAATCCCCAAATACTCTGCAAAGTGCAACTTGACGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENST00000334268.9
ENST00000542443.5
ENST00000546248.5
ENST00000628709.2
ENST00000662930.1
CDS CAA 90 bp CTTAAAGCACTTGTAAGGGTCATACATGTGTGTTTACTGTCCTTGTaGCTTCTGTCCTGGAGAATTTGCTTGACCAGAGCTCTCTCCAGG +
Preference number: 6 (lower is better)
Translates to: LKALVRVIHVCLLSL*LLSWRICLTRALSR
Trigger: CCTGGAGAGAGCTCTGGTCAAGCAAATTCTCCAGGACAGAAGCAACAAGGACAGTAAACACACATGTATGACCCTTACAAGTGCTTTAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS GCA 72 bp TTGCCCAATATTCTCTTAGAACCTCCGGCAGCCTCCTaGTCTGAATGTTTACCTTTCTGTTCATGCTTTGAC +
Preference number: 6 (lower is better)
Translates to: LPNILLEPPAAS*SECLPFCSCFD
Trigger: GTCAAAGCATGAACAGAAAGGTAAACATTCAGAGCAGGAGGCTGCCGGAGGTTCTAAGAGAATATTGGGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000546248.5
CDS CAA 72 bp AAGGAGGCTAGTCCTCAGGTCATTCCATGCATTGATTaGCCCTTTGATGTACTGGCAGTAATAGCTGGAGTT +
Preference number: 6 (lower is better)
Translates to: KEASPQVIPCID*PFDVLAVIAGV
Trigger: AACTCCAGCTATTACTGCCAGTACATCAAAGGGCAAATCAATGCATGGAATGACCTGAGGACTAGCCTCCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000361029.8
CDS CAA 72 bp CTTGTAAGGGTCATACATGTGTGTTTACTGTCCTTGTaGCTTCTGTCCTGGAGAATTTGCTTGACCAGAGCT +
Preference number: 6 (lower is better)
Translates to: LVRVIHVCLLSL*LLSWRICLTRA
Trigger: AGCTCTGGTCAAGCAAATTCTCCAGGACAGAAGCAACAAGGACAGTAAACACACATGTATGACCCTTACAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS CAA 72 bp GCACTTGTAAGGGTCATACATGTGTGTTTACTGTCCTaGTTGCTTCTGTCCTGGAGAATTTGCTTGACCAGA +
Preference number: 6 (lower is better)
Translates to: ALVRVIHVCLLS*LLLSWRICLTR
Trigger: TCTGGTCAAGCAAATTCTCCAGGACAGAAGCAACAAGGACAGTAAACACACATGTATGACCCTTACAAGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS CAA 90 bp AATCTTAAAGCACTTGTAAGGGTCATACATGTGTGTTTACTGTCCTaGTTGCTTCTGTCCTGGAGAATTTGCTTGACCAGAGCTCTCTCC +
Preference number: 6 (lower is better)
Translates to: NLKALVRVIHVCLLS*LLLSWRICLTRALS
Trigger: GGAGAGAGCTCTGGTCAAGCAAATTCTCCAGGACAGAAGCAACAAGGACAGTAAACACACATGTATGACCCTTACAAGTGCTTTAAGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000334268.9
CDS CCA 72 bp GGAATGGCTGGGCTTTGTCCTGGTTTTAAATCCCCATaGACAAATATGTCAATCATATATCGACAGAATGCA +
Preference number: 6 (lower is better)
Translates to: GMAGLCPGFKSP*TNMSIIYRQNA
Trigger: TGCATTCTGTCGATATATGATTGACATATTTGTCCATGGGGATTTAAAACCAGGACAAAGCCCAGCCATTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000334268.9
ENST00000662930.1