RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRDC (Homo sapiens)

Ensembl gene IDs: ENSG00000211829

Ensembl transcript IDs: ENST00000390477.2

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TTTGTCTTCCCATCAAGCTGGAGGATGAGCTGGGTTTGTTGTCTTTaGAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTATG +
Preference number: 1 (lower is better)
Translates to: FVFPSSWRMSWVCCL*RKSGLASSHFNKAM
Trigger: CATAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCCAGCTCATCCTCCAGCTTGATGGGAAGACAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
3UTR TCA 90 bp TTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTATaGCAGGTCAACTTGAATCACAAAGAAGTCAGAAGCCAAGGAGAT +
Preference number: 1 (lower is better)
Translates to: FEEKVVWLAAILTRL*QVNLNHKEVRSQGD
Trigger: ATCTCCTTGGCTTCTGACTTCTTTGTGATTCAAGTTGACCTGTCATAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
3UTR-3UTR GCA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCAGAAGCCAAGGAGATaGATTTTTGTAAGCCTTTGG +
Preference number: 2 (lower is better)
Translates to: GFVVFEEKVVWLAAILTRQKPRR*IFVSLW
Trigger: CCAAAGGCTTACAAAAATGCATCTCCTTGGCTTCTG...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000390477.2
3UTR-3UTR TCA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGTATGACAGGTCAACTTaGATCACAAAGAAGTCAGAA +
Preference number: 2 (lower is better)
Translates to: GFVVFEEKVVWLAAILTRYDRST*ITKKSE
Trigger: TTCTGACTTCTTTGTGATTCAAGTTGACCTGTCATA...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
3UTR-3UTR CCA 90 bp AGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTATGACAGGTCAACTTATTTTTGTAAGCCTTTaGTTTCTTCAGGAGTGTAGC +
Preference number: 2 (lower is better)
Translates to: RKSGLASSHFNKAMTGQLIFVSL*FLQECS
Trigger: GCTACACTCCTGAAGAAACCAAAGGCTTACAAAAAT...AAGTTGACCTGTCATAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000390477.2
3UTR CCA 72 bp AGTCAGAAGCCAAGGAGATGCATTTTTGTAAGCCTTTaGTTTCTTCAGGAGTGTAGCTTCCTCATGCCAGTC +
Preference number: 3 (lower is better)
Translates to: SQKPRRCIFVSL*FLQECSFLMPV
Trigger: GACTGGCATGAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGGCTTCTGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000390477.2
3UTR TCA 72 bp CCATCAAGCTGGAGGATGAGCTGGGTTTGTTGTCTTTaGAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAAC +
Preference number: 3 (lower is better)
Translates to: PSSWRMSWVCCL*RKSGLASSHFN
Trigger: GTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCCAGCTCATCCTCCAGCTTGATGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR TCA 90 bp AGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTATGACAGGTCAACTTGTAGCCCAAGCACTGTaGGGGACATCATGTTCACCT +
Preference number: 4 (lower is better)
Translates to: RKSGLASSHFNKAMTGQLVAQAL*GTSCSP
Trigger: AGGTGAACATGATGTCCCTCACAGTGCTTGGGCTAC...AAGTTGACCTGTCATAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CCA 90 bp CCAAGGAGATGCATTTTTGTAAGCCTTTGGTTTCTTCAGGAGTGTAGCTTCCTCTCTCGGTATGAACTATaGCTTTGGGTTTATGGCAGC +
Preference number: 4 (lower is better)
Translates to: PRRCIFVSLWFLQECSFLSRYEL*LWVYGS
Trigger: GCTGCCATAAACCCAAAGCCATAGTTCATACCGAGA...GAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CCA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGGTCTTCCCATCAAGCTaGAGGATGAGCTGGGTTTGT +
Preference number: 4 (lower is better)
Translates to: GFVVFEEKVVWLAAILTRVFPSS*RMSWVC
Trigger: ACAAACCCAGCTCATCCTCCAGCTTGATGGGAAGAC...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR TCA 90 bp CCAAGGAGATGCATTTTTGTAAGCCTTTGGTTTCTTCAGGAGTGTAGCTTCCTCCATATTTACCAAGCTTaGCAGCATTGTACTTCCCAC +
Preference number: 4 (lower is better)
Translates to: PRRCIFVSLWFLQECSFLHIYQA*QHCTSH
Trigger: GTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATG...GAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR TCA 90 bp CCAAGGAGATGCATTTTTGTAAGCCTTTGGTTTCTTCAGGAGTGTAGCTTCCTCTTCACCTTCTCGGTATaGACTATGGCTTTGGGTTTA +
Preference number: 4 (lower is better)
Translates to: PRRCIFVSLWFLQECSFLFTFSV*TMALGL
Trigger: TAAACCCAAAGCCATAGTTCATACCGAGAAGGTGAA...GAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR TCA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCATCAAGCTGGAGGATaGGCTGGGTTTGTTGTCTTT +
Preference number: 4 (lower is better)
Translates to: GFVVFEEKVVWLAAILTRHQAGG*AGFVVF
Trigger: AAAGACAACAAACCCAGCTCATCCTCCAGCTTGATG...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR GCA 90 bp CCAAGGAGATGCATTTTTGTAAGCCTTTGGTTTCTTCAGGAGTGTAGCTTCCTCCAGAAGCCAAGGAGATaGATTTTTGTAAGCCTTTGG +
Preference number: 4 (lower is better)
Translates to: PRRCIFVSLWFLQECSFLQKPRR*IFVSLW
Trigger: CCAAAGGCTTACAAAAATGCATCTCCTTGGCTTCTG...GAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR GCA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGAGTGTAGCTTCCTCATaGCAGTCAGCCTTACAAGAA +
Preference number: 4 (lower is better)
Translates to: GFVVFEEKVVWLAAILTRSVASS*QSALQE
Trigger: TTCTTGTAAGGCTGACTGGCATGAGGAAGCTACACT...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CCA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGATGGCTTTGGGTTTATaGCAGCTCTTTGAAGGTTGC +
Preference number: 4 (lower is better)
Translates to: GFVVFEEKVVWLAAILTRMALGL*QLFEGC
Trigger: GCAACCTTCAAAGAGCTGCCATAAACCCAAAGCCAT...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CCA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCATGACAAAAACGGATaGTTTGGTATGAGGCTGACT +
Preference number: 4 (lower is better)
Translates to: GFVVFEEKVVWLAAILTRHDKNG*FGMRLT
Trigger: AGTCAGCCTCATACCAAACCATCCGTTTTTGTCATG...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CCA 90 bp CCAAGGAGATGCATTTTTGTAAGCCTTTGGTTTCTTCAGGAGTGTAGCTTCCTCTCACTTCAAAGTCAGTaGAGTGCACAGTTTTATTGT +
Preference number: 4 (lower is better)
Translates to: PRRCIFVSLWFLQECSFLSLQSQ*SAQFYC
Trigger: ACAATAAAACTGTGCACTCCACTGACTTTGAAGTGA...GAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CCA 90 bp CCAAGGAGATGCATTTTTGTAAGCCTTTGGTTTCTTCAGGAGTGTAGCTTCCTCATTTTTGTAAGCCTTTaGTTTCTTCAGGAGTGTAGC +
Preference number: 4 (lower is better)
Translates to: PRRCIFVSLWFLQECSFLIFVSL*FLQECS
Trigger: GCTACACTCCTGAAGAAACCAAAGGCTTACAAAAAT...GAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR TCA 90 bp AGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTATGACAGGTCAACTTTGGGTTTGTTGTCTTTaGAGAAAAAGTGGTTTGGCT +
Preference number: 4 (lower is better)
Translates to: RKSGLASSHFNKAMTGQLWVCCL*RKSGLA
Trigger: AGCCAAACCACTTTTTCTTCAAAGACAACAAACCCA...AAGTTGACCTGTCATAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR GCA 90 bp AGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTATGACAGGTCAACTTCAGCTCTTTGAAGGTTaGTTTGTGTTTTCAGTTTCC +
Preference number: 4 (lower is better)
Translates to: RKSGLASSHFNKAMTGQLQLFEG*FVFSVS
Trigger: GGAAACTGAAAACACAAAGCAACCTTCAAAGAGCTG...AAGTTGACCTGTCATAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CCA 90 bp CCAAGGAGATGCATTTTTGTAAGCCTTTGGTTTCTTCAGGAGTGTAGCTTCCTCACTCTGTTATCTTCTTaGATGACACGAGATTTATTC +
Preference number: 4 (lower is better)
Translates to: PRRCIFVSLWFLQECSFLTLLSS*MTRDLF
Trigger: GAATAAATCTCGTGTCATCCAAGAAGATAACAGAGT...GAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR TCA 90 bp AGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTATGACAGGTCAACTTTATGACAGGTCAACTTaGATCACAAAGAAGTCAGAA +
Preference number: 4 (lower is better)
Translates to: RKSGLASSHFNKAMTGQLYDRST*ITKKSE
Trigger: TTCTGACTTCTTTGTGATTCAAGTTGACCTGTCATA...AAGTTGACCTGTCATAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR TCA 90 bp TTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTAGTTTTATTGTCGTGTTaGACTGAACATGTCACTGAA +
Preference number: 4 (lower is better)
Translates to: FVVFEEKVVWLAAILTRLVLLSC*TEHVTE
Trigger: TTCAGTGACATGTTCAGTTCAACACGACAATAAAAC...TAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CCA 90 bp TTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTAGAAGAAAAAGTGGTTTaGCTAGCAGCCATTTTAACA +
Preference number: 4 (lower is better)
Translates to: FVVFEEKVVWLAAILTRLEEKVV*LAAILT
Trigger: TGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTC...TAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CAA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCCAAGCTTGACAGCATaGTACTTCCCACTGGGAGAG +
Preference number: 5 (lower is better)
Translates to: GFVVFEEKVVWLAAILTRPSLTA*YFPLGE
Trigger: CTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGG...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS TCA 90 bp CCAGTCAGCCTTACAAGAAAAATAACTTGGCAGTCAAGAGAAAATTaGCGGCAACAGTCTTTGCAAACAGCATTCGTAGCCCAAGCACTG +
Preference number: 5 (lower is better)
Translates to: PVSLTRKITWQSREN*RQQSLQTAFVAQAL
Trigger: CAGTGCTTGGGCTACGAATGCTGTTTGCAAAGACTGTTGCCGTCAATTTTCTCTTGACTGCCAAGTTATTTTTCTTGTAAGGCTGACTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CAA 90 bp CCAAGGAGATGCATTTTTGTAAGCCTTTGGTTTCTTCAGGAGTGTAGCTTCCTCCTGGGTTTGTTGTCTTaGAAGAAAAAGTGGTTTGGC +
Preference number: 5 (lower is better)
Translates to: PRRCIFVSLWFLQECSFLLGLLS*KKKWFG
Trigger: GCCAAACCACTTTTTCTTCAAAGACAACAAACCCAG...GAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CAA 90 bp TTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTACCTTCCCCAGGACTTTaGTCTTCCCATCAAGCTGGA +
Preference number: 5 (lower is better)
Translates to: FVVFEEKVVWLAAILTRLPSPGL*SSHQAG
Trigger: TCCAGCTTGATGGGAAGACAAAAGTCCTGGGGAAGG...TAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CAA 90 bp CCAAGGAGATGCATTTTTGTAAGCCTTTGGTTTCTTCAGGAGTGTAGCTTCCTCGTTTATGGCAGCTCTTaGAAGGTTGCTTTGTGTTTT +
Preference number: 5 (lower is better)
Translates to: PRRCIFVSLWFLQECSFLVYGSS*KVALCF
Trigger: AAAACACAAAGCAACCTTCAAAGAGCTGCCATAAAC...GAGGAAGCTACACTCCTGAAGAAACCAAAGGCTTACAAAAATGCATCTCCTTGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CAA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGGCAGTCAAGAGAAAATaGACGGCAACAGTCTTTGCA +
Preference number: 5 (lower is better)
Translates to: GFVVFEEKVVWLAAILTRAVKRK*TATVFA
Trigger: TGCAAAGACTGTTGCCGTCAATTTTCTCTTGACTGC...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CAA 90 bp GGGTTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGGAGGATGAGCTGGGTTaGTTGTCTTTGAAGAAAAAG +
Preference number: 5 (lower is better)
Translates to: GFVVFEEKVVWLAAILTREDELG*LSLKKK
Trigger: CTTTTTCTTCAAAGACAACAAACCCAGCTCATCCTC...CCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAACCC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CAA 90 bp TTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTAGATGAGCTGGGTTTGTaGTCTTTGAAGAAAAAGTGG +
Preference number: 5 (lower is better)
Translates to: FVVFEEKVVWLAAILTRLDELGL*SLKKKW
Trigger: CCACTTTTTCTTCAAAGACAACAAACCCAGCTCATC...TAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS-3UTR CAA 90 bp TTTGTTGTCTTTGAAGAAAAAGTGGTTTGGCTAGCAGCCATTTTAACAAGGCTATCATATTTACCAAGCTaGACAGCATTGTACTTCCCA +
Preference number: 5 (lower is better)
Translates to: FVVFEEKVVWLAAILTRLSYLPS*TALYFP
Trigger: TGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGA...TAGCCTTGTTAAAATGGCTGCTAGCCAAACCACTTTTTCTTCAAAGACAACAAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS TCA 72 bp CAGTCTTTGCAAACAGCATTCGTAGCCCAAGCACTGTaGGGGACATCATGTTCACCTTCTCGGTATGAACTA +
Preference number: 6 (lower is better)
Translates to: QSLQTAFVAQAL*GTSCSPSRYEL
Trigger: TAGTTCATACCGAGAAGGTGAACATGATGTCCCTCACAGTGCTTGGGCTACGAATGCTGTTTGCAAAGACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS CAA 90 bp GCCAGTCAGCCTTACAAGAAAAATAACTTGGCAGTCAAGAGAAAATaGACGGCAACAGTCTTTGCAAACAGCATTCGTAGCCCAAGCACT +
Preference number: 6 (lower is better)
Translates to: ASQPYKKNNLAVKRK*TATVFANSIRSPST
Trigger: AGTGCTTGGGCTACGAATGCTGTTTGCAAAGACTGTTGCCGTCAATTTTCTCTTGACTGCCAAGTTATTTTTCTTGTAAGGCTGACTGGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS TCA 72 bp CCTTCACCAGACAAGCGACATTTGTTCCATTTTTCATaGCAAAAACGGATGGTTTGGTATGAGGCTGACTTC +
Preference number: 6 (lower is better)
Translates to: PSPDKRHLFHFS*QKRMVWYEADF
Trigger: GAAGTCAGCCTCATACCAAACCATCCGTTTTTGTCATGAAAAATGGAACAAATGTCGCTTGTCTGGTGAAGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS CAA 72 bp CTTCCTCATGCCAGTCAGCCTTACAAGAAAAATAACTaGGCAGTCAAGAGAAAATTGACGGCAACAGTCTTT +
Preference number: 6 (lower is better)
Translates to: LPHASQPYKKNN*AVKRKLTATVF
Trigger: AAAGACTGTTGCCGTCAATTTTCTCTTGACTGCCAAGTTATTTTTCTTGTAAGGCTGACTGGCATGAGGAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS CAA 72 bp CATGTCACTGAATTTGAATCTTCATATTTACCAAGCTaGACAGCATTGTACTTCCCACTGGGAGAGATGACA +
Preference number: 6 (lower is better)
Translates to: HVTEFESSYLPS*TALYFPLGEMT
Trigger: TGTCATCTCTCCCAGTGGGAAGTACAATGCTGTCAAGCTTGGTAAATATGAAGATTCAAATTCAGTGACATG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000390477.2
CDS CAA 72 bp CCTTACAAGAAAAATAACTTGGCAGTCAAGAGAAAATaGACGGCAACAGTCTTTGCAAACAGCATTCGTAGC +
Preference number: 6 (lower is better)
Translates to: PYKKNNLAVKRK*TATVFANSIRS
Trigger: GCTACGAATGCTGTTTGCAAAGACTGTTGCCGTCAATTTTCTCTTGACTGCCAAGTTATTTTTCTTGTAAGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000390477.2