Pregenerated sensors for TRBV28 (Homo sapiens)

Ensembl gene IDs: ENSG00000211753

Ensembl transcript IDs: ENST00000390400.2, ENST00000619125.2

Found 5 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS TCA 90 bp	CCATATCCTGGACACATTCCAGAAAAACTTTCTCTCCCGTCCTTTTaGCTAGATATCTCGAGCTCTGGGTTACTTTCACATCTACGAGGC	+
Preference number: 5 (lower is better) Translates to: PYPGHIPEKLSLPSF*LDISSSGLLSHLRG Trigger: GCCTCGTAGATGTGAAAGTAACCCAGAGCTCGAGATATCTAGTCAAAAGGACGGGAGAGAAAGTTTTTCTGGAATGTGTCCAGGATATGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000390400.2 ENST00000619125.2
CDS CCA 72 bp	TTCTCTCCCGTCCTTTTGACTAGATATCTCGAGCTCTaGGTTACTTTCACATCTACGAGGCCTACAGCCAGG	+
Preference number: 6 (lower is better) Translates to: FSPVLLTRYLEL*VTFTSTRPTAR Trigger: CCTGGCTGTAGGCCTCGTAGATGTGAAAGTAACCCAGAGCTCGAGATATCTAGTCAAAAGGACGGGAGAGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000390400.2 ENST00000619125.2
CDS CAA 90 bp	TCCATATCCTGGACACATTCCAGAAAAACTTTCTCTCCCGTCCTTTaGACTAGATATCTCGAGCTCTGGGTTACTTTCACATCTACGAGG	+
Preference number: 6 (lower is better) Translates to: SISWTHSRKTFSPVL*TRYLELWVTFTSTR Trigger: CCTCGTAGATGTGAAAGTAACCCAGAGCTCGAGATATCTAGTCAAAAGGACGGGAGAGAAAGTTTTTCTGGAATGTGTCCAGGATATGGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000390400.2 ENST00000619125.2
CDS TCA 72 bp	GGACACATTCCAGAAAAACTTTCTCTCCCGTCCTTTTaGCTAGATATCTCGAGCTCTGGGTTACTTTCACAT	+
Preference number: 6 (lower is better) Translates to: GHIPEKLSLPSF*LDISSSGLLSH Trigger: ATGTGAAAGTAACCCAGAGCTCGAGATATCTAGTCAAAAGGACGGGAGAGAAAGTTTTTCTGGAATGTGTCC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000390400.2 ENST00000619125.2
CDS CAA 72 bp	TGGACACATTCCAGAAAAACTTTCTCTCCCGTCCTTTaGACTAGATATCTCGAGCTCTGGGTTACTTTCACA	+
Preference number: 6 (lower is better) Translates to: WTHSRKTFSPVL*TRYLELWVTFT Trigger: TGTGAAAGTAACCCAGAGCTCGAGATATCTAGTCAAAAGGACGGGAGAGAAAGTTTTTCTGGAATGTGTCCA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENST00000390400.2 ENST00000619125.2

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu