Pregenerated sensors for TRAV7 (Homo sapiens)

Ensembl gene IDs: ENSG00000211781

Ensembl transcript IDs: ENST00000390429.3

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	GATAATAGGTGTTTGGGACCCATCCCTGTATTTTGCCTGTACCACTaGAAATTGTTAAAACGACTGACAGAGTACGTGCAGCTCATGGAG	+
Preference number: 5 (lower is better) Translates to: DNRCLGPIPVFCLYH*KLLKRLTEYVQLME Trigger: CTCCATGAGCTGCACGTACTCTGTCAGTCGTTTTAACAATTTGCAGTGGTACAGGCAAAATACAGGGATGGGTCCCAAACACCTATTATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000390429.3
CDS GCA 90 bp	GCTGAATACATGGATAATAGGTGTTTGGGACCCATCCCTGTATTTTaGCTGTACCACTGCAAATTGTTAAAACGACTGACAGAGTACGTG	+
Preference number: 5 (lower is better) Translates to: AEYMDNRCLGPIPVF*LYHCKLLKRLTEYV Trigger: CACGTACTCTGTCAGTCGTTTTAACAATTTGCAGTGGTACAGGCAAAATACAGGGATGGGTCCCAAACACCTATTATCCATGTATTCAGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000390429.3
CDS CAA 90 bp	AGGTGTTTGGGACCCATCCCTGTATTTTGCCTGTACCACTGCAAATaGTTAAAACGACTGACAGAGTACGTGCAGCTCATGGAGGCAACG	+
Preference number: 6 (lower is better) Translates to: RCLGPIPVFCLYHCK*LKRLTEYVQLMEAT Trigger: CGTTGCCTCCATGAGCTGCACGTACTCTGTCAGTCGTTTTAACAATTTGCAGTGGTACAGGCAAAATACAGGGATGGGTCCCAAACACCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000390429.3
CDS CAA 72 bp	GGACCCATCCCTGTATTTTGCCTGTACCACTGCAAATaGTTAAAACGACTGACAGAGTACGTGCAGCTCATG	+
Preference number: 6 (lower is better) Translates to: GPIPVFCLYHCK*LKRLTEYVQLM Trigger: CATGAGCTGCACGTACTCTGTCAGTCGTTTTAACAATTTGCAGTGGTACAGGCAAAATACAGGGATGGGTCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000390429.3
CDS GCA 72 bp	TGTTTGGGACCCATCCCTGTATTTTGCCTGTACCACTaGAAATTGTTAAAACGACTGACAGAGTACGTGCAG	+
Preference number: 6 (lower is better) Translates to: CLGPIPVFCLYH*KLLKRLTEYVQ Trigger: CTGCACGTACTCTGTCAGTCGTTTTAACAATTTGCAGTGGTACAGGCAAAATACAGGGATGGGTCCCAAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000390429.3
CDS GCA 72 bp	ATGGATAATAGGTGTTTGGGACCCATCCCTGTATTTTaGCTGTACCACTGCAAATTGTTAAAACGACTGACA	+
Preference number: 6 (lower is better) Translates to: MDNRCLGPIPVF*LYHCKLLKRLT Trigger: TGTCAGTCGTTTTAACAATTTGCAGTGGTACAGGCAAAATACAGGGATGGGTCCCAAACACCTATTATCCAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000390429.3
CDS CCA 72 bp	GTCTTCCTTTCTGCTTCTCATATCCAGCTGAATACATaGATAATAGGTGTTTGGGACCCATCCCTGTATTTT	+
Preference number: 6 (lower is better) Translates to: VFLSASHIQLNT*IIGVWDPSLYF Trigger: AAAATACAGGGATGGGTCCCAAACACCTATTATCCATGTATTCAGCTGGATATGAGAAGCAGAAAGGAAGAC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000390429.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu