Pregenerated sensors for TRAV6 (Homo sapiens)
Ensembl gene IDs: ENSG00000211780Ensembl transcript IDs: ENST00000390428.3
Found 6 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS GCA 90 bp | CTTGTCGGTACCACTGTAAGTATGCTGGAGAATAGTTTGTATAGTTaGAGGTCAGGGTGGCCGTTTTACCCTCCTGAATGTTCAGAGCCT | + |
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Preference number: 5 (lower is better) Translates to: LVGTTVSMLENSLYS*RSGWPFYPPECSEP Trigger: AGGCTCTGAACATTCAGGAGGGTAAAACGGCCACCCTGACCTGCAACTATACAAACTATTCTCCAGCATACTTACAGTGGTACCGACAAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390428.3 |
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| CDS CCA 90 bp | ACTGTAAGTATGCTGGAGAATAGTTTGTATAGTTGCAGGTCAGGGTaGCCGTTTTACCCTCCTGAATGTTCAGAGCCTCGGAATTCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: TVSMLENSLYSCRSG*PFYPPECSEPRNSV Trigger: AACAGAATTCCGAGGCTCTGAACATTCAGGAGGGTAAAACGGCCACCCTGACCTGCAACTATACAAACTATTCTCCAGCATACTTACAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390428.3 |
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| CDS TCA 72 bp | CCAGGAATGACTCCATTCGTCTCCCCAAATGTGGCCTaGAATGTAGACCCAGGCTTCTCAGCCAAAAAGCCA | + |
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Preference number: 6 (lower is better) Translates to: PGMTPFVSPNVA*NVDPGFSAKKP Trigger: TGGCTTTTTGGCTGAGAAGCCTGGGTCTACATTTCAGGCCACATTTGGGGAGACGAATGGAGTCATTCCTGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000390428.3 |
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| CDS CCA 72 bp | ATGCTGGAGAATAGTTTGTATAGTTGCAGGTCAGGGTaGCCGTTTTACCCTCCTGAATGTTCAGAGCCTCGG | + |
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Preference number: 6 (lower is better) Translates to: MLENSLYSCRSG*PFYPPECSEPR Trigger: CCGAGGCTCTGAACATTCAGGAGGGTAAAACGGCCACCCTGACCTGCAACTATACAAACTATTCTCCAGCAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390428.3 |
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| CDS CAA 72 bp | CTTGTCGGTACCACTGTAAGTATGCTGGAGAATAGTTaGTATAGTTGCAGGTCAGGGTGGCCGTTTTACCCT | + |
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Preference number: 6 (lower is better) Translates to: LVGTTVSMLENS*YSCRSGWPFYP Trigger: AGGGTAAAACGGCCACCCTGACCTGCAACTATACAAACTATTCTCCAGCATACTTACAGTGGTACCGACAAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390428.3 |
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| CDS GCA 72 bp | ACCACTGTAAGTATGCTGGAGAATAGTTTGTATAGTTaGAGGTCAGGGTGGCCGTTTTACCCTCCTGAATGT | + |
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Preference number: 6 (lower is better) Translates to: TTVSMLENSLYS*RSGWPFYPPEC Trigger: ACATTCAGGAGGGTAAAACGGCCACCCTGACCTGCAACTATACAAACTATTCTCCAGCATACTTACAGTGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390428.3 |
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