Pregenerated sensors for TRAV19 (Homo sapiens)

Ensembl gene IDs: ENSG00000211799

Ensembl transcript IDs: ENST00000390447.3

Found 3 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS GCA 90 bp	TACCTTCTGAGCCATGCTGGATACAACACAGATGGAGGCTATGACTaGCCTCAACAGGCTGGCAGTCAGCATGTTCATAGCTCTTCCCCT	+
Preference number: 5 (lower is better) Translates to: YLLSHAGYNTDGGYD*PQQAGSQHVHSSSP Trigger: AGGGGAAGAGCTATGAACATGCTGACTGCCAGCCTGTTGAGGGCAGTCATAGCCTCCATCTGTGTTGTATCCAGCATGGCTCAGAAGGTA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000390447.3
CDS GCA 72 bp	AGCCATGCTGGATACAACACAGATGGAGGCTATGACTaGCCTCAACAGGCTGGCAGTCAGCATGTTCATAGC	+
Preference number: 6 (lower is better) Translates to: SHAGYNTDGGYD*PQQAGSQHVHS Trigger: GCTATGAACATGCTGACTGCCAGCCTGTTGAGGGCAGTCATAGCCTCCATCTGTGTTGTATCCAGCATGGCT 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000390447.3
CDS CAA 90 bp	GGTGGATTTCTGGAAGTTCCAAGAATACCGACCACTTATTTCATTTaGCTCATCAAAAGAGTTCCGACGAATAAGGAAAACCAATTCTCC	+
Preference number: 6 (lower is better) Translates to: GGFLEVPRIPTTYFI*LIKRVPTNKENQFS Trigger: GGAGAATTGGTTTTCCTTATTCGTCGGAACTCTTTTGATGAGCAAAATGAAATAAGTGGTCGGTATTCTTGGAACTTCCAGAAATCCACC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000390447.3

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu