Pregenerated sensors for TRAPPC2 (Homo sapiens)
Ensembl gene IDs: ENSG00000196459Ensembl transcript IDs: ENST00000380578.1, ENST00000380579.6, ENST00000518847.2, ENST00000519382.1, ENST00000683569.1, ENST00000683983.1
Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | ACCTCACAGCACACAATGGTTGGTACTCTAAAACGTTTAGCTCTGTaGATCTCAACCCGGAGCGATCTTGCTTCCAAGAGGACATCTGGC | + |
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Preference number: 5 (lower is better) Translates to: TSQHTMVGTLKRLAL*ISTRSDLASKRTSG Trigger: GCCAGATGTCCTCTTGGAAGCAAGATCGCTCCGGGTTGAGATCCACAGAGCTAAACGTTTTAGAGTACCAACCATTGTGTGCTGTGAGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000380579.6 ENST00000683569.1 |
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| CDS CCA 90 bp | TCCTCACAGCACACAATGGTTGGTACTCTAAAACGTTTAGCTCTGTaGATCTCAACCCGGAGCGATCTTGCTTCCAAGAGGACATCTGGC | + |
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Preference number: 5 (lower is better) Translates to: SSQHTMVGTLKRLAL*ISTRSDLASKRTSG Trigger: GCCAGATGTCCTCTTGGAAGCAAGATCGCTCCGGGTTGAGATCCACAGAGCTAAACGTTTTAGAGTACCAACCATTGTGTGCTGTGAGGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000519382.1 ENST00000683983.1 |
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| CDS CCA 90 bp | ACTCTACCTCATGTCACTTACCTTTACCTCACAGCACACAATGGTTaGTACTCTAAAACGTTTAGCTCTGTGGATCTCAACCCGGAGCGA | + |
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Preference number: 5 (lower is better) Translates to: TLPHVTYLYLTAHNG*YSKTFSSVDLNPER Trigger: TCGCTCCGGGTTGAGATCCACAGAGCTAAACGTTTTAGAGTACCAACCATTGTGTGCTGTGAGGTAAAGGTAAGTGACATGAGGTAGAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000683569.1 |
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| CDS CCA 90 bp | ATGGTCTTCAATATATGGCTCCTTTACCTCACAGCACACAATGGTTaGTACTCTAAAACGTTTAGCTCTGTGGATCTCAACCCGGAGCGA | + |
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Preference number: 5 (lower is better) Translates to: MVFNIWLLYLTAHNG*YSKTFSSVDLNPER Trigger: TCGCTCCGGGTTGAGATCCACAGAGCTAAACGTTTTAGAGTACCAACCATTGTGTGCTGTGAGGTAAAGGAGCCATATATTGAAGACCAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380579.6 |
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| CDS CAA 72 bp | GGGTGGGGGACTATAGACTGCAGGCCAAATCTAGCCTaGCCCATCATTTTGCGACCATCTAAGGCTGCTCTC | + |
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Preference number: 6 (lower is better) Translates to: GWGTIDCRPNLA*PIILRPSKAAL Trigger: GAGAGCAGCCTTAGATGGTCGCAAAATGATGGGCAAGGCTAGATTTGGCCTGCAGTCTATAGTCCCCCACCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000380578.1 |
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| CDS CAA 72 bp | TCTGGCAATATCTGGAGACATCTTTGGTTGTCACACTaGGGGGAGAAGGTGATACTGCAGTGGGAGGCCGAC | + |
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Preference number: 6 (lower is better) Translates to: SGNIWRHLWLSH*GEKVILQWEAD Trigger: GTCGGCCTCCCACTGCAGTATCACCTTCTCCCCCAAGTGTGACAACCAAAGATGTCTCCAGATATTGCCAGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000380579.6 ENST00000519382.1 ENST00000683569.1 ENST00000683983.1 |
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| CDS CAA 90 bp | CGATCTTGCTTCCAAGAGGACATCTGGCAATATCTGGAGACATCTTaGGTTGTCACACTTGGGGGAGAAGGTGATACTGCAGTGGGAGGC | + |
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Preference number: 6 (lower is better) Translates to: RSCFQEDIWQYLETS*VVTLGGEGDTAVGG Trigger: GCCTCCCACTGCAGTATCACCTTCTCCCCCAAGTGTGACAACCAAAGATGTCTCCAGATATTGCCAGATGTCCTCTTGGAAGCAAGATCG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 4 transcripts: ENST00000380579.6 ENST00000519382.1 ENST00000683569.1 ENST00000683983.1 |
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| CDS GCA 72 bp | ACGTTTAGCTCTGTGGATCTCAACCCGGAGCGATCTTaGTTCCAAGAGGACATCTGGCAATATCTGGAGACA | + |
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Preference number: 6 (lower is better) Translates to: TFSSVDLNPERS*FQEDIWQYLET Trigger: TGTCTCCAGATATTGCCAGATGTCCTCTTGGAAGCAAGATCGCTCCGGGTTGAGATCCACAGAGCTAAACGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000380579.6 ENST00000519382.1 ENST00000683569.1 ENST00000683983.1 |
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| CDS CCA 72 bp | TTCAATATATGGCTCCCCTATATGGAAAGCCACGAATaGGCAAGCAGCATGGCGCTAAGTCAGCAGGAAGAC | + |
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Preference number: 6 (lower is better) Translates to: FNIWLPYMESHE*ASSMALSQQED Trigger: GTCTTCCTGCTGACTTAGCGCCATGCTGCTTGCCCATTCGTGGCTTTCCATATAGGGGAGCCATATATTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000518847.2 |
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| CDS CAA 72 bp | ATAGACTGCAGGCCAAATCTAGCCTTGCCCATCATTTaGCGACCATCTAAGGCTGCTCTCACGCTTCAATGG | + |
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Preference number: 6 (lower is better) Translates to: IDCRPNLALPII*RPSKAALTLQW Trigger: CCATTGAAGCGTGAGAGCAGCCTTAGATGGTCGCAAAATGATGGGCAAGGCTAGATTTGGCCTGCAGTCTAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380578.1 |
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| CDS CCA 72 bp | CTCAACCCGGAGCGATCTTGCTTCCAAGAGGACATCTaGCAATATCTGGAGACATCTTTGGTTGTCACACTT | + |
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Preference number: 6 (lower is better) Translates to: LNPERSCFQEDI*QYLETSLVVTL Trigger: AAGTGTGACAACCAAAGATGTCTCCAGATATTGCCAGATGTCCTCTTGGAAGCAAGATCGCTCCGGGTTGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENST00000380579.6 ENST00000519382.1 ENST00000683569.1 ENST00000683983.1 |
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| CDS CCA 72 bp | CACACAATGGTTGGTACTCTAAAACGTTTAGCTCTGTaGATCTCAACCCGGAGCGATCTTGCTTCCAAGAGG | + |
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Preference number: 6 (lower is better) Translates to: HTMVGTLKRLAL*ISTRSDLASKR Trigger: CCTCTTGGAAGCAAGATCGCTCCGGGTTGAGATCCACAGAGCTAAACGTTTTAGAGTACCAACCATTGTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENST00000380579.6 ENST00000519382.1 ENST00000683569.1 ENST00000683983.1 |
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| CDS TCA 72 bp | ACAGCTGGCACTTTTAACTCTAGAATTGGAAGGCCATaGCTATGGAAGAAAAGGCAGATCAGAACTCCTGGC | + |
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Preference number: 6 (lower is better) Translates to: TAGTFNSRIGRP*LWKKRQIRTPG Trigger: GCCAGGAGTTCTGATCTGCCTTTTCTTCCATAGTCATGGCCTTCCAATTCTAGAGTTAAAAGTGCCAGCTGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380578.1 |
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| CDS CCA 72 bp | GTCTTCAATATATGGCTCCTCACAGCACACAATGGTTaGTACTCTAAAACGTTTAGCTCTGTGGATCTCAAC | + |
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Preference number: 6 (lower is better) Translates to: VFNIWLLTAHNG*YSKTFSSVDLN Trigger: GTTGAGATCCACAGAGCTAAACGTTTTAGAGTACCAACCATTGTGTGCTGTGAGGAGCCATATATTGAAGAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000519382.1 ENST00000683983.1 |
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| CDS CAA 72 bp | ATGAATTCTTGCTGGACTAGATTTCAGAGCTGGAGTTaGCCAAGGGAAGGGCTTCTTACTTTCTTCAGTACA | + |
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Preference number: 6 (lower is better) Translates to: MNSCWTRFQSWS*PREGLLTFFST Trigger: TGTACTGAAGAAAGTAAGAAGCCCTTCCCTTGGCAAACTCCAGCTCTGAAATCTAGTCCAGCAAGAATTCAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380578.1 |
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| CDS CCA 72 bp | AATATATGGCTCCTTTACCTCACAGCACACAATGGTTaGTACTCTAAAACGTTTAGCTCTGTGGATCTCAAC | + |
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Preference number: 6 (lower is better) Translates to: NIWLLYLTAHNG*YSKTFSSVDLN Trigger: GTTGAGATCCACAGAGCTAAACGTTTTAGAGTACCAACCATTGTGTGCTGTGAGGTAAAGGAGCCATATATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000380579.6 |
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| CDS CCA 72 bp | GCCATGACTATGGAAGAAAAGGCAGATCAGAACTCCTaGCATGATGACGTAAGATTTAAAATGCTATTTGGG | + |
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Preference number: 6 (lower is better) Translates to: AMTMEEKADQNS*HDDVRFKMLFG Trigger: CCCAAATAGCATTTTAAATCTTACGTCATCATGCCAGGAGTTCTGATCTGCCTTTTCTTCCATAGTCATGGC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000380578.1 |
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| CDS CAA 90 bp | AGGACAGACACTGTATCACTGATTCGCAGACTGCGTGTGCTGTATTaGTCTTCTTTCTACTTGAAGTATGTGTGCTATAAATGTAAGTCT | + |
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Preference number: 6 (lower is better) Translates to: RTDTVSLIRRLRVLY*SSFYLKYVCYKCKS Trigger: AGACTTACATTTATAGCACACATACTTCAAGTAGAAAGAAGACAAATACAGCACACGCAGTCTGCGAATCAGTGATACAGTGTCTGTCCT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380578.1 |
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| CDS CAA 72 bp | ACTGTATCACTGATTCGCAGACTGCGTGTGCTGTATTaGTCTTCTTTCTACTTGAAGTATGTGTGCTATAAA | + |
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Preference number: 6 (lower is better) Translates to: TVSLIRRLRVLY*SSFYLKYVCYK Trigger: TTTATAGCACACATACTTCAAGTAGAAAGAAGACAAATACAGCACACGCAGTCTGCGAATCAGTGATACAGT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380578.1 |
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| CDS TCA 72 bp | GCAGACTGCGTGTGCTGTATTTGTCTTCTTTCTACTTaGAGTATGTGTGCTATAAATGTAAGTCTTTGCAAA | + |
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Preference number: 6 (lower is better) Translates to: ADCVCCICLLST*SMCAINVSLCK Trigger: TTTGCAAAGACTTACATTTATAGCACACATACTTCAAGTAGAAAGAAGACAAATACAGCACACGCAGTCTGC 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000380578.1 |
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