RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TRAM1 (Homo sapiens)

Ensembl gene IDs: ENSG00000067167

Ensembl transcript IDs: ENST00000262213.7, ENST00000518678.1, ENST00000521049.5, ENST00000521425.5

Found 20 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp ATGGTGGGGCCGCCGCCCGCGCCTGCAGGTGCTCCGCCCCGGTTCTaGTCTTCCCAGCTGCTCACCGACTCGCCGCCGCCTCCCGCTGGC +
Preference number: 5 (lower is better)
Translates to: MVGPPPAPAGAPPRF*SSQLLTDSPPPPAG
Trigger: GCCAGCGGGAGGCGGCGGCGAGTCGGTGAGCAGCTGGGAAGAGCAGAACCGGGGCGGAGCACCTGCAGGCGCGGGCGGCGGCCCCACCAT
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262213.7
ENST00000521049.5
CDS TCA 90 bp GCCGGTGCCCGGCGGCCACCGCCCTTCAAGTCGAAAGCAGATGCCTaGCTCCGGTTTCTCGCTCACCCCAATCTCGGAGCTACCGGGGGC +
Preference number: 5 (lower is better)
Translates to: AGARRPPPFKSKADA*LRFLAHPNLGATGG
Trigger: GCCCCCGGTAGCTCCGAGATTGGGGTGAGCGAGAAACCGGAGTCAGGCATCTGCTTTCGACTTGAAGGGCGGTGGCCGCCGGGCACCGGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS GCA 90 bp CTGCGCCGGTGCCCGGCGGCCACCGCCCTTCAAGTCGAAAGCAGATaGCTGACTCCGGTTTCTCGCTCACCCCAATCTCGGAGCTACCGG +
Preference number: 5 (lower is better)
Translates to: LRRCPAATALQVESR*LTPVSRSPQSRSYR
Trigger: CCGGTAGCTCCGAGATTGGGGTGAGCGAGAAACCGGAGTCAGGCATCTGCTTTCGACTTGAAGGGCGGTGGCCGCCGGGCACCGGCGCAG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS GCA 90 bp CCTCCACCTTCGAAGCTGAAAATTAATGAACTTCCACATCATAAATaGCTGAGTAACGCAAATGGATGCCAGAACAGCGATTCTAACAGC +
Preference number: 5 (lower is better)
Translates to: PPPSKLKINELPHHK*LSNANGCQNSDSNS
Trigger: GCTGTTAGAATCGCTGTTCTGGCATCCATTTGCGTTACTCAGGCATTTATGATGTGGAAGTTCATTAATTTTCAGCTTCGAAGGTGGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262213.7
ENST00000521425.5
CDS GCA 90 bp AGAAGATCTGCCTTTAGTTACTGTTGGTTTCTTCTTCACAGCTGGTaGCTGAAAAGCAGAATGTTCCCTCCACCTTCGAAGCTGAAAATT +
Preference number: 5 (lower is better)
Translates to: RRSAFSYCWFLLHSW*LKSRMFPPPSKLKI
Trigger: AATTTTCAGCTTCGAAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGCAGATCTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000262213.7
ENST00000521425.5
CDS CCA 90 bp TTTAGAAGATCTGCCTTTAGTTACTGTTGGTTTCTTCTTCACAGCTaGTGCCTGAAAAGCAGAATGTTCCCTCCACCTTCGAAGCTGAAA +
Preference number: 5 (lower is better)
Translates to: FRRSAFSYCWFLLHS*CLKSRMFPPPSKLK
Trigger: TTTCAGCTTCGAAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGCAGATCTTCTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262213.7
ENST00000521425.5
CDS CCA 90 bp ATTCCCATCCTCTCCTACTTCAAGAAACAAAATTACTCGATTCCTTaGCACCGCTGTTCAGAACCTCGATTTATCCATCAGACCTTGTTT +
Preference number: 5 (lower is better)
Translates to: IPILSYFKKQNYSIP*HRCSEPRFIHQTLF
Trigger: AAACAAGGTCTGATGGATAAATCGAGGTTCTGAACAGCGGTGCCAAGGAATCGAGTAATTTTGTTTCTTGAAGTAGGAGAGGATGGGAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS TCA 90 bp AGTCATCAAAATACTAGATACGTGGGAAGAGAATTTACACACTCCTaGCATTCCCATCCTCTCCTACTTCAAGAAACAAAATTACTCGAT +
Preference number: 5 (lower is better)
Translates to: SHQNTRYVGREFTHS*HSHPLLLQETKLLD
Trigger: ATCGAGTAATTTTGTTTCTTGAAGTAGGAGAGGATGGGAATGTCAGGAGTGTGTAAATTCTCTTCCCACGTATCTAGTATTTTGATGACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS GCA 72 bp CCGCCGCCCGCGCCTGCAGGTGCTCCGCCCCGGTTCTaGTCTTCCCAGCTGCTCACCGACTCGCCGCCGCCT +
Preference number: 6 (lower is better)
Translates to: PPPAPAGAPPRF*SSQLLTDSPPP
Trigger: AGGCGGCGGCGAGTCGGTGAGCAGCTGGGAAGAGCAGAACCGGGGCGGAGCACCTGCAGGCGCGGGCGGCGG
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262213.7
ENST00000521049.5
CDS CCA 72 bp GGGGGCTCTTGGTGCTTTTCTTGCGAATCGCCATGGTaGGGCCGCCGCCCGCGCCTGCAGGTGCTCCGCCCC +
Preference number: 6 (lower is better)
Translates to: GGSWCFSCESPW*GRRPRLQVLRP
Trigger: GGGGCGGAGCACCTGCAGGCGCGGGCGGCGGCCCCACCATGGCGATTCGCAAGAAAAGCACCAAGAGCCCCC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000262213.7
ENST00000521049.5
CDS GCA 72 bp TGTCCGCGTGATTCTGCAGGTGCTCCGCCCCGGTTCTaGTCTTCCCAGCTGCTCACCGACTCGCCGCCGCCT +
Preference number: 6 (lower is better)
Translates to: CPRDSAGAPPRF*SSQLLTDSPPP
Trigger: AGGCGGCGGCGAGTCGGTGAGCAGCTGGGAAGAGCAGAACCGGGGCGGAGCACCTGCAGAATCACGCGGACA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000518678.1
CDS GCA 72 bp TGCCCGGCGGCCACCGCCCTTCAAGTCGAAAGCAGATaGCTGACTCCGGTTTCTCGCTCACCCCAATCTCGG +
Preference number: 6 (lower is better)
Translates to: CPAATALQVESR*LTPVSRSPQSR
Trigger: CCGAGATTGGGGTGAGCGAGAAACCGGAGTCAGGCATCTGCTTTCGACTTGAAGGGCGGTGGCCGCCGGGCA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS TCA 72 bp CGGCGGCCACCGCCCTTCAAGTCGAAAGCAGATGCCTaGCTCCGGTTTCTCGCTCACCCCAATCTCGGAGCT +
Preference number: 6 (lower is better)
Translates to: RRPPPFKSKADA*LRFLAHPNLGA
Trigger: AGCTCCGAGATTGGGGTGAGCGAGAAACCGGAGTCAGGCATCTGCTTTCGACTTGAAGGGCGGTGGCCGCCG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS GCA 72 bp AAAGACAAAAATGAAAACAATCTGGCGCGCCTCCACTaGGCCGGTGCCCGGCGGCCACCGCCCTTCAAGTCG +
Preference number: 6 (lower is better)
Translates to: KDKNENNLARLH*AGARRPPPFKS
Trigger: CGACTTGAAGGGCGGTGGCCGCCGGGCACCGGCGCAGTGGAGGCGCGCCAGATTGTTTTCATTTTTGTCTTT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS GCA 72 bp GCCTTTAGTTACTGTTGGTTTCTTCTTCACAGCTGGTaGCTGAAAAGCAGAATGTTCCCTCCACCTTCGAAG +
Preference number: 6 (lower is better)
Translates to: AFSYCWFLLHSW*LKSRMFPPPSK
Trigger: CTTCGAAGGTGGAGGGAACATTCTGCTTTTCAGGCACCAGCTGTGAAGAAGAAACCAACAGTAACTAAAGGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262213.7
ENST00000521425.5
CDS CAA 90 bp CATTCCCATCCTCTCCTACTTCAAGAAACAAAATTACTCGATTCCTaGGCACCGCTGTTCAGAACCTCGATTTATCCATCAGACCTTGTT +
Preference number: 6 (lower is better)
Translates to: HSHPLLLQETKLLDS*APLFRTSIYPSDLV
Trigger: AACAAGGTCTGATGGATAAATCGAGGTTCTGAACAGCGGTGCCAAGGAATCGAGTAATTTTGTTTCTTGAAGTAGGAGAGGATGGGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS CCA 72 bp CTCTCCTACTTCAAGAAACAAAATTACTCGATTCCTTaGCACCGCTGTTCAGAACCTCGATTTATCCATCAG +
Preference number: 6 (lower is better)
Translates to: LSYFKKQNYSIP*HRCSEPRFIHQ
Trigger: CTGATGGATAAATCGAGGTTCTGAACAGCGGTGCCAAGGAATCGAGTAATTTTGTTTCTTGAAGTAGGAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS CAA 72 bp CCTCTCCTACTTCAAGAAACAAAATTACTCGATTCCTaGGCACCGCTGTTCAGAACCTCGATTTATCCATCA +
Preference number: 6 (lower is better)
Translates to: PLLLQETKLLDS*APLFRTSIYPS
Trigger: TGATGGATAAATCGAGGTTCTGAACAGCGGTGCCAAGGAATCGAGTAATTTTGTTTCTTGAAGTAGGAGAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000521425.5
CDS GCA 72 bp TCGAAGCTGAAAATTAATGAACTTCCACATCATAAATaGCTGAGTAACGCAAATGGATGCCAGAACAGCGAT +
Preference number: 6 (lower is better)
Translates to: SKLKINELPHHK*LSNANGCQNSD
Trigger: ATCGCTGTTCTGGCATCCATTTGCGTTACTCAGGCATTTATGATGTGGAAGTTCATTAATTTTCAGCTTCGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000262213.7
ENST00000521425.5
CDS TCA 72 bp AATACTAGATACGTGGGAAGAGAATTTACACACTCCTaGCATTCCCATCCTCTCCTACTTCAAGAAACAAAA +
Preference number: 6 (lower is better)
Translates to: NTRYVGREFTHS*HSHPLLLQETK
Trigger: TTTTGTTTCTTGAAGTAGGAGAGGATGGGAATGTCAGGAGTGTGTAAATTCTCTTCCCACGTATCTAGTATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000521425.5