Pregenerated sensors for TOMM20 (Homo sapiens)
Ensembl gene IDs: ENSG00000173726Ensembl transcript IDs: ENST00000366607.5
Found 11 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTCTCACCTGCTGAGCACCATTTGGCCAGCATCACTACAACAAGCTaGTTACATCACCTTGTAAAACTTAAGATGGGGATGAATAGTGTT | + |
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Preference number: 1 (lower is better) Translates to: FSPAEHHLASITTTS*LHHLVKLKMGMNSV Trigger: AACACTATTCATCCCCATCTTAAGTTTTACAAGGTGATGTAATCAGCTTGTTGTAGTGATGCTGGCCAAATGGTGCTCAGCAGGTGAGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| 3UTR-3UTR TCA 90 bp | ATCACAAACCCTCAAGATACCCGAGAAAAGTCCTCAAATGTGAGTCGCCTAGTCTTCAAAGATGAAATGTaGTTTGTTCAAGGCTGTGCG | + |
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Preference number: 2 (lower is better) Translates to: ITNPQDTREKSSNVSRLVFKDEM*FVQGCA Trigger: CGCACAGCCTTGAACAAATCACATTTCATCTTTGAA...GACTAGGCGACTCACATTTGAGGACTTTTCTCGGGTATCTTGAGGGTTTGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| 3UTR TCA 72 bp | GCTGAGCACCATTTGGCCAGCATCACTACAACAAGCTaGTTACATCACCTTGTAAAACTTAAGATGGGGATG | + |
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Preference number: 3 (lower is better) Translates to: AEHHLASITTTS*LHHLVKLKMGM Trigger: CATCCCCATCTTAAGTTTTACAAGGTGATGTAATCAGCTTGTTGTAGTGATGCTGGCCAAATGGTGCTCAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| 3UTR TCA 72 bp | TGCAATAACATCTCATTAACACTCTGGTCCACATGTTaGTTTAATAAAGTCAGAATGGCAGGTGGGAGGATG | + |
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Preference number: 3 (lower is better) Translates to: CNNISLTLWSTC*FNKVRMAGGRM Trigger: CATCCTCCCACCTGCCATTCTGACTTTATTAAATCAACATGTGGACCAGAGTGTTAATGAGATGTTATTGCA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| CDS-3UTR TCA 90 bp | ATCACAAACCCTCAAGATACCCGAGAAAAGTCCTCAAATGTGAGTCGCCTAGTCTTTGTTCTCACCTGCTaGGCACCATTTGGCCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: ITNPQDTREKSSNVSRLVFVLTC*APFGQH Trigger: ATGCTGGCCAAATGGTGCTCAGCAGGTGAGAACAAA...GACTAGGCGACTCACATTTGAGGACTTTTCTCGGGTATCTTGAGGGTTTGTGAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| CDS-3UTR CCA 90 bp | ATCACAAACCCTCAAGATACCCGAGAAAAGTCCTCAAATGTGAGTCGCCTAGTCCTGCTGAGCACCATTTaGCCAGCATCACTACAACAA | + |
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Preference number: 4 (lower is better) Translates to: ITNPQDTREKSSNVSRLVLLSTI*PASLQQ Trigger: TTGTTGTAGTGATGCTGGCCAAATGGTGCTCAGCAG...GACTAGGCGACTCACATTTGAGGACTTTTCTCGGGTATCTTGAGGGTTTGTGAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| CDS-3UTR TCA 90 bp | ATCACAAACCCTCAAGATACCCGAGAAAAGTCCTCAAATGTGAGTCGCCTAGTCGAACCAAACATTTACTaGGTGCCGACTATGCAAGCT | + |
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Preference number: 4 (lower is better) Translates to: ITNPQDTREKSSNVSRLVEPNIY*VPTMQA Trigger: AGCTTGCATAGTCGGCACTCAGTAAATGTTTGGTTC...GACTAGGCGACTCACATTTGAGGACTTTTCTCGGGTATCTTGAGGGTTTGTGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| CDS-3UTR CCA 90 bp | ATCACAAACCCTCAAGATACCCGAGAAAAGTCCTCAAATGTGAGTCGCCTAGTCAGTCAGAATGGCAGGTaGGAGGATGGTAAAATAAAC | + |
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Preference number: 4 (lower is better) Translates to: ITNPQDTREKSSNVSRLVSQNGR*EDGKIN Trigger: GTTTATTTTACCATCCTCCCACCTGCCATTCTGACT...GACTAGGCGACTCACATTTGAGGACTTTTCTCGGGTATCTTGAGGGTTTGTGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| CDS-3UTR CCA 90 bp | ATCACAAACCCTCAAGATACCCGAGAAAAGTCCTCAAATGTGAGTCGCCTAGTCGGGATGAATAGTGTTTaGCAATTACATTTCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: ITNPQDTREKSSNVSRLVGMNSV*QLHFWE Trigger: CTCCCAGAAATGTAATTGCCAAACACTATTCATCCC...GACTAGGCGACTCACATTTGAGGACTTTTCTCGGGTATCTTGAGGGTTTGTGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| 3UTR CAA 72 bp | CTAACAGTAGAGGTAAGTTCAAAGATGAAATGTGATTaGTTCAAGGCTGTGCGGCTAATCAGAGGCAGAAAC | + |
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Preference number: 4 (lower is better) Translates to: LTVEVSSKMKCD*FKAVRLIRGRN Trigger: GTTTCTGCCTCTGATTAGCCGCACAGCCTTGAACAAATCACATTTCATCTTTGAACTTACCTCTACTGTTAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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| CDS-3UTR CAA 90 bp | ATCACAAACCCTCAAGATACCCGAGAAAAGTCCTCAAATGTGAGTCGCCTAGTCCCTGCTGAGCACCATTaGGCCAGCATCACTACAACA | + |
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Preference number: 5 (lower is better) Translates to: ITNPQDTREKSSNVSRLVPAEHH*ASITTT Trigger: TGTTGTAGTGATGCTGGCCAAATGGTGCTCAGCAGG...GACTAGGCGACTCACATTTGAGGACTTTTCTCGGGTATCTTGAGGGTTTGTGAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000366607.5 |
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