Pregenerated sensors for TNP1 (Homo sapiens)
Ensembl gene IDs: ENSG00000118245Ensembl transcript IDs: ENST00000236979.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | AACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTaGTTGGTGCTGTGTGAAGCGCACCAGGGCAGAGCCCGCTGGGGG | + |
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Preference number: 1 (lower is better) Translates to: NIRSPWQFPFCCSCC*LVLCEAHQGRARWG Trigger: CCCCCAGCGGGCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGGAGACCTGATGTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR GCA 90 bp | TCTAACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTaGTGCTTGGTGCTGTGTGAAGCGCACCAGGGCAGAGCCCGCTGG | + |
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Preference number: 1 (lower is better) Translates to: SNIRSPWQFPFCCSC*CLVLCEAHQGRARW Trigger: CCAGCGGGCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGGAGACCTGATGTTAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR TCA 90 bp | AAAACAGCCAACATATACATTCCTCATTTCGTCACAACTGGCATTTaGTCCACATTCCATAGGCTCCTCTCTGGCTTTGATCTAACATCA | + |
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Preference number: 1 (lower is better) Translates to: KTANIYIPHFVTTGI*STFHRLLSGFDLTS Trigger: TGATGTTAGATCAAAGCCAGAGAGGAGCCTATGGAATGTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTTGGCTGTTTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR-3UTR TCA 90 bp | AAAAACAGCCAACATATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACCTGCTTGGTGCTGTGTaGAGCGCACCAGGGCAGAGC | + |
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Preference number: 2 (lower is better) Translates to: KNSQHIHSSFRHNWHLIHLLGAV*SAPGQS Trigger: GCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAG...GTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTTGGCTGTTTTT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR-3UTR GCA 90 bp | TATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACATTCCATAGGCTCCCTTGTTGCTGCTTGGTaGTGTGTGAAGCGCACCAGG | + |
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Preference number: 2 (lower is better) Translates to: YTFLISSQLAFDPHSIGSLVAAW*CVKRTR Trigger: CCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAG...GGAGCCTATGGAATGTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR-3UTR CCA 90 bp | CAGCCAACATATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACATTCCGTTCTTGTTGCTGCTTaGTGCTGTGTGAAGCGCACC | + |
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Preference number: 2 (lower is better) Translates to: QPTYTFLISSQLAFDPHSVLVAA*CCVKRT Trigger: GGTGCGCTTCACACAGCACCAAGCAGCAACAAGAAC...GGAATGTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTTGGCTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCCAACATATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACATTCCTGCTGTTCTTGTTGCTaGTTGGTGCTGTGTGAAGCG | + |
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Preference number: 2 (lower is better) Translates to: QPTYTFLISSQLAFDPHSCCSCC*LVLCEA Trigger: CGCTTCACACAGCACCAAGCAGCAACAAGAACAGCA...GGAATGTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTTGGCTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR-3UTR GCA 90 bp | CAGCCAACATATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACATTCCTTCTGCTGTTCTTGTTaGTGCTTGGTGCTGTGTGAA | + |
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Preference number: 2 (lower is better) Translates to: QPTYTFLISSQLAFDPHSFCCSC*CLVLCE Trigger: TTCACACAGCACCAAGCAGCAACAAGAACAGCAGAA...GGAATGTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTTGGCTG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR CCA 72 bp | CTTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTGCTTaGTGCTGTGTGAAGCGCACCAGGGCAGAGCCCGCT | + |
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Preference number: 3 (lower is better) Translates to: LGSSPSAVLVAA*CCVKRTRAEPA Trigger: AGCGGGCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR GCA 72 bp | TCTCCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTaGTTGGTGCTGTGTGAAGCGCACCAGGGCAGAGCC | + |
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Preference number: 3 (lower is better) Translates to: SPWQFPFCCSCC*LVLCEAHQGRA Trigger: GGCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR GCA 72 bp | AGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTaGTGCTTGGTGCTGTGTGAAGCGCACCAGGGCAGA | + |
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Preference number: 3 (lower is better) Translates to: RSPWQFPFCCSC*CLVLCEAHQGR Trigger: TCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGGAGACCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR-3UTR CAA 90 bp | ACATATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACATTCCATAGGCTGTTCTTGTTGCTGCTaGGTGCTGTGTGAAGCGCAC | + |
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Preference number: 3 (lower is better) Translates to: TYTFLISSQLAFDPHSIGCSCCC*VLCEAH Trigger: GTGCGCTTCACACAGCACCAAGCAGCAACAAGAACA...GCCTATGGAATGTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR TCA 72 bp | AACATATACATTCCTCATTTCGTCACAACTGGCATTTaGTCCACATTCCATAGGCTCCTCTCTGGCTTTGAT | + |
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Preference number: 3 (lower is better) Translates to: NIYIPHFVTTGI*STFHRLLSGFD Trigger: ATCAAAGCCAGAGAGGAGCCTATGGAATGTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| 3UTR CAA 72 bp | CCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTGCTaGGTGCTGTGTGAAGCGCACCAGGGCAGAGCCCGC | + |
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Preference number: 4 (lower is better) Translates to: PWQFPFCCSCCC*VLCEAHQGRAR Trigger: GCGGGCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR TCA 90 bp | AACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTGCTTGGTGCTGCTTGGTGCTGTGTaGAGCGCACCAGGGCAGAGC | + |
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Preference number: 4 (lower is better) Translates to: NIRSPWQFPFCCSCCCLVLLGAV*SAPGQS Trigger: GCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAG...CACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGGAGACCTGATGTT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR GCA 90 bp | CTAACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTGCTTGGAGTGGGAGCGGTAATTaGGATTGGCGTCATCGCCCC | + |
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Preference number: 4 (lower is better) Translates to: LTSGLLGSSPSAVLVAAWSGSGN*DWRHRP Trigger: GGGGCGATGACGCCAATCGCAATTACCGCTCCCACT...CCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGGAGACCTGATGTTAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR CCA 90 bp | CAGCCAACATATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACATTCCCAGGGCAGAGCCCGCTaGGGGCTCACAAGTGGGAGC | + |
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Preference number: 4 (lower is better) Translates to: QPTYTFLISSQLAFDPHSQGRAR*GLTSGS Trigger: GCTCCCACTTGTGAGCCCCCAGCGGGCTCTGCCCTG...GGAATGTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTTGGCTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR TCA 90 bp | CTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTTGCTGCCACCTCTCTTaGCTCCCTTGTGAGGAGATC | + |
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Preference number: 4 (lower is better) Translates to: LSGFDLTSGLLGSSPSAVCCHLS*LPCEEI Trigger: GATCTCCTCACAAGGGAGTCAAGAGAGGTGGCAGCA...AACAGCAGAAGGGGAACTGCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR GCA 90 bp | TCCACATTCCATAGGCTCCTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCCTTGTTGCTGCTTGGTaGTGTGTGAAGCGCACCAGG | + |
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Preference number: 4 (lower is better) Translates to: STFHRLLSGFDLTSGLLGLVAAW*CVKRTR Trigger: CCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAG...GCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAGGAGCCTATGGAATGTGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR TCA 90 bp | CTCCTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTCACAACTGGCATTTaGTCCACATTCCATAGGCTC | + |
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Preference number: 4 (lower is better) Translates to: LLSGFDLTSGLLGSSPSAVTTGI*STFHRL Trigger: GAGCCTATGGAATGTGGATCAAATGCCAGTTGTGAC...AGCAGAAGGGGAACTGCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAGGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR GCA 90 bp | CATAGGCTCCTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCAGTTCCCCTCGACATGGTAAGTTCTaGCAAAATGAGGGGCTTTGC | + |
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Preference number: 4 (lower is better) Translates to: HRLLSGFDLTSGLLGSSPRHGKF*QNEGLC Trigger: GCAAAGCCCCTCATTTTGGCAGAACTTACCATGTCG...AGGGGAACTGCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAGGAGCCTATG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR GCA 90 bp | CTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTTGCTGTTCTTGTTGCTaGTTGGTGCTGTGTGAAGCG | + |
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Preference number: 4 (lower is better) Translates to: LSGFDLTSGLLGSSPSAVCCSCC*LVLCEA Trigger: CGCTTCACACAGCACCAAGCAGCAACAAGAACAGCA...AACAGCAGAAGGGGAACTGCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR GCA 90 bp | TCGTCACAACTGGCATTTGATCCACATTCCATAGGCTCCTCTCTGGCTTTGATCTGGCAGTTCCCCTTCTaGTGTTCTTGTTGCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: SSQLAFDPHSIGSSLALIWQFPF*CSCCCL Trigger: CAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCA...GATCAAAGCCAGAGAGGAGCCTATGGAATGTGGATCAAATGCCAGTTGTGACGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR TCA 90 bp | TATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACATTCCATAGGCTCCCTCTTGACTCCCTTGTaGGGAGATCGGCTCTTGCTC | + |
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Preference number: 4 (lower is better) Translates to: YTFLISSQLAFDPHSIGSLLTPL*GDRLLL Trigger: GAGCAAGAGCCGATCTCCTCACAAGGGAGTCAAGAG...GGAGCCTATGGAATGTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR GCA 90 bp | CTAACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTGCTTGGTCTTGCTCCTCCTCATaGCATGACTCTTTAATTTGC | + |
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Preference number: 4 (lower is better) Translates to: LTSGLLGSSPSAVLVAAWSCSSS*HDSLIC Trigger: GCAAATTAAAGAGTCATGGCATGAGGAGGAGCAAGA...CCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGGAGACCTGATGTTAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR GCA 90 bp | AAAAACAGCCAACATATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACGAGGAGATCGGCTCTTaGTCCTCCTCATGCCATGAC | + |
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Preference number: 4 (lower is better) Translates to: KNSQHIHSSFRHNWHLIHEEIGS*SSSCHD Trigger: GTCATGGCATGAGGAGGAGCAAGAGCCGATCTCCTC...GTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTTGGCTGTTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR CCA 90 bp | TCCACATTCCATAGGCTCCTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCTCATTTCGTCACAACTaGCATTTGATCCACATTCCA | + |
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Preference number: 4 (lower is better) Translates to: STFHRLLSGFDLTSGLLGSFRHN*HLIHIP Trigger: TGGAATGTGGATCAAATGCCAGTTGTGACGAAATGA...GCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAGGAGCCTATGGAATGTGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR GCA 90 bp | CTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTTCCTACTTTTCAGGTTaGCCTTACGGTATTTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: LSGFDLTSGLLGSSPSAVSYFSG*PYGIFF Trigger: AAAGAAAATACCGTAAGGGCAACCTGAAAAGTAGGA...AACAGCAGAAGGGGAACTGCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR CCA 90 bp | AAAAACAGCCAACATATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACGTTCTTGTTGCTGCTTaGTGCTGTGTGAAGCGCACC | + |
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Preference number: 4 (lower is better) Translates to: KNSQHIHSSFRHNWHLIHVLVAA*CCVKRT Trigger: GGTGCGCTTCACACAGCACCAAGCAGCAACAAGAAC...GTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTTGGCTGTTTTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR CCA 90 bp | CTCCTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTTTATTGAGATGTTaGGGAAAAACAGCCAACATA | + |
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Preference number: 4 (lower is better) Translates to: LLSGFDLTSGLLGSSPSAVLLRC*GKTANI Trigger: TATGTTGGCTGTTTTTCCCCAACATCTCAATAAAAC...AGCAGAAGGGGAACTGCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAGGAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR GCA 90 bp | AAAAACAGCCAACATATACATTCCTCATTTCGTCACAACTGGCATTTGATCCACTTCTGCTGTTCTTGTTaGTGCTTGGTGCTGTGTGAA | + |
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Preference number: 4 (lower is better) Translates to: KNSQHIHSSFRHNWHLIHFCCSC*CLVLCE Trigger: TTCACACAGCACCAAGCAGCAACAAGAACAGCAGAA...GTGGATCAAATGCCAGTTGTGACGAAATGAGGAATGTATATGTTGGCTGTTTTT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS CCA 90 bp | TGTTGCTGCTTGGTGCTGTGTGAAGCGCACCAGGGCAGAGCCCGCTaGGGGCTCACAAGTGGGAGCGGTAATTGCGATTGGCGTCATCGC | + |
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Preference number: 5 (lower is better) Translates to: CCCLVLCEAHQGRAR*GLTSGSGNCDWRHR Trigger: GCGATGACGCCAATCGCAATTACCGCTCCCACTTGTGAGCCCCCAGCGGGCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS TCA 90 bp | TTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTGCTTGGTGCTGTGTaGAGCGCACCAGGGCAGAGCCCGCTGGGGGCTCACAAGTGGGAG | + |
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Preference number: 5 (lower is better) Translates to: LAVPLLLFLLLLGAV*SAPGQSPLGAHKWE Trigger: CTCCCACTTGTGAGCCCCCAGCGGGCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS CCA 90 bp | TCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTGCTTaGTGCTGTGTGAAGCGCACCAGGGCAGAGCCCGCTGGGGGCTCA | + |
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Preference number: 5 (lower is better) Translates to: SGLLGSSPSAVLVAA*CCVKRTRAEPAGGS Trigger: TGAGCCCCCAGCGGGCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGGAGACCTGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR CAA 90 bp | CTCCTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTCCCCTTCTGCTGTTCTaGTTGCTGCTTGGTGCTGTG | + |
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Preference number: 5 (lower is better) Translates to: LLSGFDLTSGLLGSSPSAPLLLF*LLLGAV Trigger: CACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGG...AGCAGAAGGGGAACTGCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS-3UTR CAA 90 bp | CATAGGCTCCTCTCTGGCTTTGATCTAACATCAGGTCTCCTTGGCAGTTCCCCTTTCCTACTTTTCAGGTaGCCCTTACGGTATTTTCTT | + |
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Preference number: 5 (lower is better) Translates to: HRLLSGFDLTSGLLGSSPFLLFR*PLRYFL Trigger: AAGAAAATACCGTAAGGGCAACCTGAAAAGTAGGAA...AGGGGAACTGCCAAGGAGACCTGATGTTAGATCAAAGCCAGAGAGGAGCCTATG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS CAA 90 bp | ATCAGGTCTCCTTGGCAGTTCCCCTTCTGCTGTTCTTGTTGCTGCTaGGTGCTGTGTGAAGCGCACCAGGGCAGAGCCCGCTGGGGGCTC | + |
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Preference number: 6 (lower is better) Translates to: IRSPWQFPFCCSCCC*VLCEAHQGRARWGL Trigger: GAGCCCCCAGCGGGCTCTGCCCTGGTGCGCTTCACACAGCACCAAGCAGCAACAAGAACAGCAGAAGGGGAACTGCCAAGGAGACCTGAT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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| CDS GCA 72 bp | CTCCCTTGTGAGGAGATCGGCTCTTGCTCCTCCTCATaGCATGACTCTTTAATTTGCGGCTGGTCGACATGG | + |
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Preference number: 6 (lower is better) Translates to: LPCEEIGSCSSS*HDSLICGWSTW Trigger: CCATGTCGACCAGCCGCAAATTAAAGAGTCATGGCATGAGGAGGAGCAAGAGCCGATCTCCTCACAAGGGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000236979.2 |
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