Pregenerated sensors for TNNC1 (Homo sapiens)
Ensembl gene IDs: ENSG00000114854Ensembl transcript IDs: ENST00000232975.8, ENST00000461086.1, ENST00000496590.1
Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGGGACTCAGCTGGAGTTaGAGGCTGGGCATAGGCAGC | + |
|
Preference number: 2 (lower is better) Translates to: LGEQALFASPRTDLGRESGLSWS*RLGIGS Trigger: GCTGCCTATGCCCAGCCTCCAACTCCAGCTGAGTCC...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| 3UTR-3UTR CCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGTTGGGGTTGAGGACATaGCCAGGCTCAGGTCCTGGG | + |
|
Preference number: 2 (lower is better) Translates to: LGEQALFASPRTDLGRESLGLRT*PGSGPG Trigger: CCCAGGACCTGAGCCTGGCCATGTCCTCAACCCCAA...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| 3UTR-3UTR CCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGACCCCAGGACTCAGCTaGAGTTGGAGGCTGGGCATA | + |
|
Preference number: 2 (lower is better) Translates to: LGEQALFASPRTDLGRESTPGLS*SWRLGI Trigger: TATGCCCAGCCTCCAACTCCAGCTGAGTCCTGGGGT...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR GCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGCATCAAAGTCCACCGTaGCGCTGCCGTCCTCGTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESHQSPP*RCRPRP Trigger: TGGACGAGGACGGCAGCGGCACGGTGGACTTTGATG...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR GCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGTCATCGATCATCTCCTaGAGCTCCTCAGGGGTGGGG | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESSSIIS*SSSGVG Trigger: CCCCACCCCTGAGGAGCTGCAGGAGATGATCGATGA...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR TCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGTGTCTCCGTCCTTCATaGGCTCCTCGATGTCGTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESCLRPS*APRCRP Trigger: AGGACGACATCGAGGAGCTCATGAAGGACGGAGACA...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR TCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGATAGGCAGCTCTGGGTaGAGGTCAGCATCTACTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESIGSSG*RSASTP Trigger: TGGAGTAGATGCTGACCTTCACCCAGAGCTGCCTAT...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR GCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGTGTAGATGTCATCCATaGTGGCGGCTCACAGGACAG | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESCRCHP*WRLTGQ Trigger: CTGTCCTGTGAGCCGCCAGCATGGATGACATCTACA...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR CCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGAGATGTCATCCATGCTaGCGGCTCACAGGACAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESRCHPC*RLTGQL Trigger: AAGCTGTCCTGTGAGCCGCCAGCATGGATGACATCT...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR GCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGCCTCAGATTTCCCTTTaGTGTCGTCCTTCATGCACC | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESPQISL*CRPSCT Trigger: GGTGCATGAAGGACGACAGCAAAGGGAAATCTGAGG...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR GCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGGTCTCGCCTGTAGCCTaGAGCATTATCTTCAGCTCA | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESVSPVA*SIIFSS Trigger: TGAGCTGAAGATAATGCTGCAGGCTACAGGCGAGAC...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR TCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGTGCACCGAACCATCATaGCCAGGAACTCATCAAAGT | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESCTEPS*PGTHQS Trigger: ACTTTGATGAGTTCCTGGTCATGATGGTTCGGTGCA...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR TCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGACTCCACACCCTTCATaGACTCCAGGAACTCATCAT | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESTPHPS*TPGTHH Trigger: ATGATGAGTTCCTGGAGTTCATGAAGGGTGTGGAGT...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR GCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGAGAGCAGGCTTTATTTaGATCCCCCAGGACAGATCT | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESRAGFI*IPQDRS Trigger: AGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCT...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR TCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGTGTCGAAGGCTGCCTTaGACTCATTTTTCTGCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESCRRLP*THFSAL Trigger: AAGAGCAGAAAAATGAGTTCAAGGCAGCCTTCGACA...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR GCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGGAAGATGTCGAAGGCTaGCTTGAACTCATTTTTCTG | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESEDVEG*LELIFL Trigger: CAGAAAAATGAGTTCAAGGCAGCCTTCGACATCTTC...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR GCA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGTTGAACTCATTTTTCTaGTCTTCTGTCAGCTGCTCT | + |
|
Preference number: 4 (lower is better) Translates to: LGEQALFASPRTDLGRESLNSFF*SSVSCS Trigger: AGAGCAGCTGACAGAAGAGCAGAAAAATGAGTTCAA...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS GCA 90 bp | CCTGGGGGTGGGCAGCATGGCCGTTACAGAGGCCAGGGTAGGTACTaGAGGCAGCACCTTCGACACGAACCCCCATGTTCTCACCGCATC | + |
|
Preference number: 5 (lower is better) Translates to: PGGGQHGRYRGQGRY*RQHLRHEPPCSHRI Trigger: GATGCGGTGAGAACATGGGGGTTCGTGTCGAAGGTGCTGCCTGCAGTACCTACCCTGGCCTCTGTAACGGCCATGCTGCCCACCCCCAGG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000461086.1 |
||
| CDS TCA 90 bp | GCTCAGGGCCAGGGTGACAGGTGGGCACCCCCTTCAGGACCAAGGTaGCCCTCAGTAACAATAGTCAGTGACCACTCAATGCCCTTTCGG | + |
|
Preference number: 5 (lower is better) Translates to: AQGQGDRWAPPSGPR*PSVTIVSDHSMPFR Trigger: CCGAAAGGGCATTGAGTGGTCACTGACTATTGTTACTGAGGGTCACCTTGGTCCTGAAGGGGGTGCCCACCTGTCACCCTGGCCCTGAGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000496590.1 |
||
| CDS-3UTR CAA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGTCGGGGGATTTGGGGTaGAGGACATGGCCAGGCTCA | + |
|
Preference number: 5 (lower is better) Translates to: LGEQALFASPRTDLGRESSGDLG*RTWPGS Trigger: TGAGCCTGGCCATGTCCTCAACCCCAAATCCCCCGA...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR CAA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGAGGGAGTCGGGGGATTaGGGGTTGAGGACATGGCCA | + |
|
Preference number: 5 (lower is better) Translates to: LGEQALFASPRTDLGRESRESGD*GLRTWP Trigger: TGGCCATGTCCTCAACCCCAAATCCCCCGACTCCCT...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS CCA 90 bp | AACCCCAGGACTCAGCTGGAGTTGGAGGCTGGGCATAGGCAGCTCTaGGTGAAGGTCAGCATCTACTCCACACCCTTCATGAACTCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: NPRTQLELEAGHRQL*VKVSIYSTPFMNSR Trigger: CCTGGAGTTCATGAAGGGTGTGGAGTAGATGCTGACCTTCACCCAGAGCTGCCTATGCCCAGCCTCCAACTCCAGCTGAGTCCTGGGGTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS TCA 90 bp | GGCACCCCCTTCAGGACCAAGGTGACCCTCAGTAACAATAGTCAGTaGCCACTCAATGCCCTTTCGGCCCCTGATGAAACTCAAGCTGGG | + |
|
Preference number: 5 (lower is better) Translates to: GTPFRTKVTLSNNSQ*PLNALSAPDETQAG Trigger: CCCAGCTTGAGTTTCATCAGGGGCCGAAAGGGCATTGAGTGGTCACTGACTATTGTTACTGAGGGTCACCTTGGTCCTGAAGGGGGTGCC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000496590.1 |
||
| CDS-3UTR CAA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGGAGAGCAGGCTTTATTaGCATCCCCCAGGACAGATC | + |
|
Preference number: 5 (lower is better) Translates to: LGEQALFASPRTDLGRESESRLY*HPPGQI Trigger: GATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTC...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS-3UTR CAA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGTCCTCAGATTTCCCTTaGCTGTCGTCCTTCATGCAC | + |
|
Preference number: 5 (lower is better) Translates to: LGEQALFASPRTDLGRESSSDFP*LSSFMH Trigger: GTGCATGAAGGACGACAGCAAAGGGAAATCTGAGGA...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS TCA 90 bp | AAAGGAAAGGGAATCTCAAGGCTCAGACTCAGGTATAGCTGCTGCTaGGGAAACCAACCCATTCCACAGGTGAGAAGGCTGGAGCTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: KGKGISRLRLRYSCC*GNQPIPQVRRLELE Trigger: CTCCAGCTCCAGCCTTCTCACCTGTGGAATGGGTTGGTTTCCTCAGCAGCAGCTATACCTGAGTCTGAGCCTTGAGATTCCCTTTCCTTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496590.1 |
||
| CDS-3UTR CAA 90 bp | TTGGGAGAGCAGGCTTTATTTGCATCCCCCAGGACAGATCTGGGGAGGGAGTCGATGTCGAAGGCTGCCTaGAACTCATTTTTCTGCTCT | + |
|
Preference number: 5 (lower is better) Translates to: LGEQALFASPRTDLGRESMSKAA*NSFFCS Trigger: AGAGCAGAAAAATGAGTTCAAGGCAGCCTTCGACAT...CGACTCCCTCCCCAGATCTGTCCTGGGGGATGCAAATAAAGCCTGCTCTCCCAA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS GCA 72 bp | GGGCAGCATGGCCGTTACAGAGGCCAGGGTAGGTACTaGAGGCAGCACCTTCGACACGAACCCCCATGTTCT | + |
|
Preference number: 6 (lower is better) Translates to: GQHGRYRGQGRY*RQHLRHEPPCS Trigger: AGAACATGGGGGTTCGTGTCGAAGGTGCTGCCTGCAGTACCTACCCTGGCCTCTGTAACGGCCATGCTGCCC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000461086.1 |
||
| CDS CCA 72 bp | ACTCAGCTGGAGTTGGAGGCTGGGCATAGGCAGCTCTaGGTGAAGGTCAGCATCTACTCCACACCCTTCATG | + |
|
Preference number: 6 (lower is better) Translates to: TQLELEAGHRQL*VKVSIYSTPFM Trigger: CATGAAGGGTGTGGAGTAGATGCTGACCTTCACCCAGAGCTGCCTATGCCCAGCCTCCAACTCCAGCTGAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000232975.8 |
||
| CDS TCA 72 bp | TCCCTTTGCTGTCGTCCTTCATGCACCGAACCATCATaGCCAGGAACTCATCAAAGTCCACCGTGCCGCTGC | + |
|
Preference number: 6 (lower is better) Translates to: SLCCRPSCTEPS*PGTHQSPPCRC Trigger: GCAGCGGCACGGTGGACTTTGATGAGTTCCTGGTCATGATGGTTCGGTGCATGAAGGACGACAGCAAAGGGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENST00000232975.8 ENST00000461086.1 ENST00000496590.1 |
||
| CDS TCA 72 bp | GGAATCTCAAGGCTCAGACTCAGGTATAGCTGCTGCTaGGGAAACCAACCCATTCCACAGGTGAGAAGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: GISRLRLRYSCC*GNQPIPQVRRL Trigger: CAGCCTTCTCACCTGTGGAATGGGTTGGTTTCCTCAGCAGCAGCTATACCTGAGTCTGAGCCTTGAGATTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000496590.1 |
||
| CDS TCA 72 bp | TTCAGGACCAAGGTGACCCTCAGTAACAATAGTCAGTaGCCACTCAATGCCCTTTCGGCCCCTGATGAAACT | + |
|
Preference number: 6 (lower is better) Translates to: FRTKVTLSNNSQ*PLNALSAPDET Trigger: AGTTTCATCAGGGGCCGAAAGGGCATTGAGTGGTCACTGACTATTGTTACTGAGGGTCACCTTGGTCCTGAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000496590.1 |
||