Pregenerated sensors for TNFSF18 (Homo sapiens)
Ensembl gene IDs: ENSG00000120337Ensembl transcript IDs: ENST00000404377.4, ENST00000404377.5
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTCTTTGGCTCTTCCCCTGAGTCTCTTTCAGATAGGCATGATAGATaGAAATTCACGTGCAGAGGAGTTCTGTTTGTGTTGATTTTTGTA | + |
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Preference number: 1 (lower is better) Translates to: VFGSSPESLSDRHDR*KFTCRGVLFVLIFV Trigger: TACAAAAATCAACACAAACAGAACTCCTCTGCACGTGAATTTTCATCTATCATGCCTATCTGAAAGAGACTCAGGGGAAGAGCCAAAGAC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR CAA 90 bp | GAGACAGTGCAATGCAGGGGACTACCCATTGCCTCTTGTAGTCACTaGTCCTATGAGTTGAGGAAAGTTGGCTATGCTATGCTATCACAT | + |
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Preference number: 2 (lower is better) Translates to: ETVQCRGLPIASCSH*SYELRKVGYAMLSH Trigger: ATGTGATAGCATAGCATAGCCAACTTTCCTCAACTCATAGGACAAGTGACTACAAGAGGCAATGGGTAGTCCCCTGCATTGCACTGTCTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR-3UTR TCA 90 bp | TTACAGCAGCCCAAGAATATGAGAACAAAGCCAGGCTACTGCCCCAGATCCTTTGATAGGCATGATAGATaGAAATTCACGTGCAGAGGA | + |
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Preference number: 2 (lower is better) Translates to: LQQPKNMRTKPGYCPRSFDRHDR*KFTCRG Trigger: TCCTCTGCACGTGAATTTTCATCTATCATGCCTATC...AAAGGATCTGGGGCAGTAGCCTGGCTTTGTTCTCATATTCTTGGGCTGCTGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR-3UTR GCA 90 bp | CACTTGTCCTATGAGTTGAGGAAAGTTGGCTATGCTATGCTATCACATTCTCATACAAAGCCAGGCTACTaGCCCAGATCCTTTTTGCAT | + |
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Preference number: 2 (lower is better) Translates to: HLSYELRKVGYAMLSHSHTKPGY*PRSFLH Trigger: ATGCAAAAAGGATCTGGGGCAGTAGCCTGGCTTTGT...ATGAGAATGTGATAGCATAGCATAGCCAACTTTCCTCAACTCATAGGACAAGTG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR-3UTR GCA 90 bp | CCATTTTATGCCACTTGTACCTCTATTCCAATAGTTCTCAGATTGTTCTTTATCGCCCCAGATCCTTTTTaGATACCAGGTAAATCTTCC | + |
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Preference number: 2 (lower is better) Translates to: PFYATCTSIPIVLRLFFIAPDPF*IPGKSS Trigger: GGAAGATTTACCTGGTATGCAAAAAGGATCTGGGGC...GATAAAGAACAATCTGAGAACTATTGGAATAGAGGTACAAGTGGCATAAAATGG 39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR-3UTR GCA 90 bp | CCCCCAAATGCCTGCCCAATTAACTTCATAGAATTGCTAACTGTTTTACGAAAGTTAATGAAGTATCTCTaGAGATCCAACCAAAAGTCT | + |
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Preference number: 2 (lower is better) Translates to: PPNACPINFIELLTVLRKLMKYL*RSNQKS Trigger: AGACTTTTGGTTGGATCTGCAGAGATACTTCATTAA...CTTTCGTAAAACAGTTAGCAATTCTATGAAGTTAATTGGGCAGGCATTTGGGGG 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR-3UTR CAA 90 bp | CCCCCAAATGCCTGCCCAATTAACTTCATAGAATTGCTAACTGTTTTACGAAAGTCCAACCAAAAGTCTTaGGCTCTTCCCCTGAGTCTC | + |
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Preference number: 3 (lower is better) Translates to: PPNACPINFIELLTVLRKSNQKS*ALPLSL Trigger: GAGACTCAGGGGAAGAGCCAAAGACTTTTGGTTGGA...CTTTCGTAAAACAGTTAGCAATTCTATGAAGTTAATTGGGCAGGCATTTGGGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR-3UTR CAA 90 bp | AATAACAATTCTAAAGCTGAGACAGTGCAATGCAGGGGACTACCCATTGCCTCTCACTTGTCCTATGAGTaGAGGAAAGTTGGCTATGCT | + |
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Preference number: 3 (lower is better) Translates to: NNNSKAETVQCRGLPIASHLSYE*RKVGYA Trigger: AGCATAGCCAACTTTCCTCAACTCATAGGACAAGTG...AGAGGCAATGGGTAGTCCCCTGCATTGCACTGTCTCAGCTTTAGAATTGTTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR TCA 72 bp | ACACACACCAACAGTAAGGTCTCACAAAGCTCTACGTaGGGGTTCGGAATGACTCCTTTGATAAGGCTTTTT | + |
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Preference number: 3 (lower is better) Translates to: THTNSKVSQSST*GFGMTPLIRLF Trigger: AAAAAGCCTTATCAAAGGAGTCATTCCGAACCCTCACGTAGAGCTTTGTGAGACCTTACTGTTGGTGTGTGT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR TCA 72 bp | TCTTCCCCTGAGTCTCTTTCAGATAGGCATGATAGATaGAAATTCACGTGCAGAGGAGTTCTGTTTGTGTTG | + |
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Preference number: 3 (lower is better) Translates to: SSPESLSDRHDR*KFTCRGVLFVL Trigger: CAACACAAACAGAACTCCTCTGCACGTGAATTTTCATCTATCATGCCTATCTGAAAGAGACTCAGGGGAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR TCA 72 bp | TGTGTTGATTTTTGTAGACAGACAAACTCTAGAAATTaGATATCTTCTCCCTCCAATCCACCCACTGGCACC | + |
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Preference number: 3 (lower is better) Translates to: CVDFCRQTNSRN*ISSPSNPPTGT Trigger: GGTGCCAGTGGGTGGATTGGAGGGAGAAGATATTCAATTTCTAGAGTTTGTCTGTCTACAAAAATCAACACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| 3UTR-3UTR CAA 90 bp | CCCCCAAATGCCTGCCCAATTAACTTCATAGAATTGCTAACTGTTTTACGAAAGTCAGTCTACTTTTTATaGGGAGGGTCTCAGAAGATG | + |
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Preference number: 3 (lower is better) Translates to: PPNACPINFIELLTVLRKSVYFL*GGSQKM Trigger: CATCTTCTGAGACCCTCCCAATAAAAAGTAGACTGA...CTTTCGTAAAACAGTTAGCAATTCTATGAAGTTAATTGGGCAGGCATTTGGGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000404377.4 |
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| CDS GCA 90 bp | CAGTCAGACACCTTATTCACGCAAGGAGGTTCAGAAGATGCCATTTaGCATTTTGAGGGTAATGGTCCAAACTTAGCCATACAGGGCTCC | + |
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Preference number: 5 (lower is better) Translates to: QSDTLFTQGGSEDAI*HFEGNGPNLAIQGS Trigger: GGAGCCCTGTATGGCTAAGTTTGGACCATTACCCTCAAAATGGCAAATGGCATCTTCTGAACCTCCTTGCGTGAATAAGGTGTCTGACTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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| CDS TCA 90 bp | GGGCAGAGAGGAGTCATTAAGGAGAGTTTCACAGTGGTGTGCTGGTaGACTAGCTGTCCAAAAGGAAAATGTGTAGTGTTTGCCAATTTA | + |
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Preference number: 5 (lower is better) Translates to: GQRGVIKESFTVVCW*TSCPKGKCVVFANL Trigger: TAAATTGGCAAACACTACACATTTTCCTTTTGGACAGCTAGTTCACCAGCACACCACTGTGAAACTCTCCTTAATGACTCCTCTCTGCCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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| CDS TCA 90 bp | GGTAGTCATCCCTCTAGCTGCAGCTGTAGTAACCTCTGCTTGCCCTaGGAAATCACCAGTATGCCAAATTTTTACAATTTCATTTTCTCC | + |
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Preference number: 5 (lower is better) Translates to: GSHPSSCSCSNLCLP*EITSMPNFYNFIFS Trigger: GGAGAAAATGAAATTGTAAAAATTTGGCATACTGGTGATTTCTCAGGGCAAGCAGAGGTTACTACAGCTGCAGCTAGAGGGATGACTACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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| CDS GCA 90 bp | CTGTTGGTAGTCATCCCTCTAGCTGCAGCTGTAGTAACCTCTGCTTaGCCTGAGAAATCACCAGTATGCCAAATTTTTACAATTTCATTT | + |
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Preference number: 5 (lower is better) Translates to: LLVVIPLAAAVVTSA*PEKSPVCQIFTISF Trigger: AAATGAAATTGTAAAAATTTGGCATACTGGTGATTTCTCAGGGCAAGCAGAGGTTACTACAGCTGCAGCTAGAGGGATGACTACCAACAG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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| CDS TCA 72 bp | CCCTCTAGCTGCAGCTGTAGTAACCTCTGCTTGCCCTaGGAAATCACCAGTATGCCAAATTTTTACAATTTC | + |
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Preference number: 6 (lower is better) Translates to: PSSCSCSNLCLP*EITSMPNFYNF Trigger: GAAATTGTAAAAATTTGGCATACTGGTGATTTCTCAGGGCAAGCAGAGGTTACTACAGCTGCAGCTAGAGGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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| CDS TCA 72 bp | GGAGTCATTAAGGAGAGTTTCACAGTGGTGTGCTGGTaGACTAGCTGTCCAAAAGGAAAATGTGTAGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: GVIKESFTVVCW*TSCPKGKCVVF Trigger: AAACACTACACATTTTCCTTTTGGACAGCTAGTTCACCAGCACACCACTGTGAAACTCTCCTTAATGACTCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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| CDS GCA 72 bp | ACCTTATTCACGCAAGGAGGTTCAGAAGATGCCATTTaGCATTTTGAGGGTAATGGTCCAAACTTAGCCATA | + |
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Preference number: 6 (lower is better) Translates to: TLFTQGGSEDAI*HFEGNGPNLAI Trigger: TATGGCTAAGTTTGGACCATTACCCTCAAAATGGCAAATGGCATCTTCTGAACCTCCTTGCGTGAATAAGGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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| CDS CAA 72 bp | ACAGCCGCACCTCAAAAGGAGCTACATCATTGTAGTTaGCATTGGGAGCCACTTGGCCATAAATTAAATATA | + |
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Preference number: 6 (lower is better) Translates to: TAAPQKELHHCS*HWEPLGHKLNI Trigger: TATATTTAATTTATGGCCAAGTGGCTCCCAATGCAAACTACAATGATGTAGCTCCTTTTGAGGTGCGGCTGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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| CDS CAA 72 bp | AAAATTATAACATCAGGAAAATGTAAAGGTCACCTGTaGGTAGTCATCCCTCTAGCTGCAGCTGTAGTAACC | + |
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Preference number: 6 (lower is better) Translates to: KIITSGKCKGHL*VVIPLAAAVVT Trigger: GGTTACTACAGCTGCAGCTAGAGGGATGACTACCAACAGGTGACCTTTACATTTTCCTGATGTTATAATTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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| CDS CAA 90 bp | TGTTTTTATACAGCCGCACCTCAAAAGGAGCTACATCATTGTAGTTaGCATTGGGAGCCACTTGGCCATAAATTAAATATAAGCCATTCT | + |
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Preference number: 6 (lower is better) Translates to: CFYTAAPQKELHHCS*HWEPLGHKLNISHS Trigger: AGAATGGCTTATATTTAATTTATGGCCAAGTGGCTCCCAATGCAAACTACAATGATGTAGCTCCTTTTGAGGTGCGGCTGTATAAAAACA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000404377.5 |
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