RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMPPE (Homo sapiens)

Ensembl gene IDs: ENSG00000188167

Ensembl transcript IDs: ENST00000342462.5, ENST00000416695.6

Found 349 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGGACTaGCTGCTCCATGAATCCTCTGGGCACCTGTGCCCAACAGAGTTC +
Preference number: 1 (lower is better)
Translates to: APAAGSSLPTHIPQD*LLHESSGHLCPTEF
Trigger: GAACTCTGTTGGGCACAGGTGCCCAGAGGATTCATGGAGCAGCCAGTCCTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR GCA 90 bp CAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGGACTGGCTaGTCCATGAATCCTCTGGGCACCTGTGCCCAACAGAGTTCCTTA +
Preference number: 1 (lower is better)
Translates to: QQQAARYPLTFPRTG*SMNPLGTCAQQSSL
Trigger: TAAGGAACTCTGTTGGGCACAGGTGCCCAGAGGATTCATGGAGCAGCCAGTCCTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CCA 90 bp CCTACATATCTTGTCATACTGCCTGTGCCCTATCTCTCTTTGCCTTaGTTTCCTTATCTCCAAATAGGGAAAAGCAGCCTGTCCCCAGTG +
Preference number: 1 (lower is better)
Translates to: PTYLVILPVPYLSLP*FPYLQIGKSSLSPV
Trigger: CACTGGGGACAGGCTGCTTTTCCCTATTTGGAGATAAGGAAACCAAGGCAAAGAGAGATAGGGCACAGGCAGTATGACAAGATATGTAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR GCA 90 bp AGACAGTTAAATAGCATCCCTCAAGGCCTGGAACAGGAGGAGCTTTaGATTCCAGTAGATTTTGCTGATGCCCTCAATAGAGGTGATCCT +
Preference number: 1 (lower is better)
Translates to: RQLNSIPQGLEQEEL*IPVDFADALNRGDP
Trigger: AGGATCACCTCTATTGAGGGCATCAGCAAAATCTACTGGAATGCAAAGCTCCTCCTGTTCCAGGCCTTGAGGGATGCTATTTAACTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR GCA 90 bp AATAAGGAAACCACCAAAATTTCAACTCAAAGATACATTTTAAACTaGATGGTATGGCCCACTGTCAATACCGTGGCTGCCTGGGAACAA +
Preference number: 1 (lower is better)
Translates to: NKETTKISTQRYILN*MVWPTVNTVAAWEQ
Trigger: TTGTTCCCAGGCAGCCACGGTATTGACAGTGGGCCATACCATGCAGTTTAAAATGTATCTTTGAGTTGAAATTTTGGTGGTTTCCTTATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CCA 90 bp ACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATACATAGGATaGACCTGTTTTCTTTCTGCTAATAGAAAGCAATCAGTCAAGCAA +
Preference number: 1 (lower is better)
Translates to: TTYERVLMLFLRYIG*TCFLSANRKQSVKQ
Trigger: TTGCTTGACTGATTGCTTTCTATTAGCAGAAAGAAAACAGGTCCATCCTATGTATCTGAGAAACAACATCAACACCCTCTCGTATGTGGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGACCGTTCTTCTCCCCTaGCCTTGCCCCCAAAGGCCC +
Preference number: 2 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQTVLLP*PCPQRP
Trigger: GGGCCTTTGGGGGCAAGGTCAGGGGAGAAGAACGGT...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCCCCAACGCTGCCCTATaGGTGAGCAGCAGGGTTAGC +
Preference number: 2 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTPNAAL*VSSRVS
Trigger: GCTAACCCTGCTGCTCACTCATAGGGCAGCGTTGGG...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGTTTGAGTCAGGCTTGTaGCCAAGGGTGTGTAGGCAA +
Preference number: 2 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQFESGL*PRVCRQ
Trigger: TTGCCTACACACCCTTGGTCACAAGCCTGACTCAAA...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGACCGTTCTTCTCCCCTaGCCTTGCCCCCAAAGGCCC +
Preference number: 2 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVTVLLP*PCPQRP
Trigger: GGGCCTTTGGGGGCAAGGTCAGGGGAGAAGAACGGT...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCACGCTGCCCTATGAGTaGGCAGCAGGGTTAGCCTCT +
Preference number: 2 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPTLPYE*AAGLAS
Trigger: AGAGGCTAACCCTGCTGCTCACTCATAGGGCAGCGT...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCCATCCCTGGGAGCTCTaGAGGAGAAGGTCCCCATTC +
Preference number: 2 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTHPWEL*RRRSPF
Trigger: GAATGGGGACCTTCTCCTGCAGAGCTCCCAGGGATG...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCAGCCTGTCCCCAGTaGGCTCCCCGAAGGGTTGTA +
Preference number: 2 (lower is better)
Translates to: SAAKMSAASGNTNHIREGAACPQ*APRRVV
Trigger: TACAACCCTTCGGGGAGCTCACTGGGGACAGGCTGC...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCGATGGAAACCAAGGCTaGGTGAGGGAAAGTCACCCA +
Preference number: 2 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPDGNQG*VRESHP
Trigger: TGGGTGACTTTCCCTCACTCAGCCTTGGTTTCCATC...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCGATGGAAACCAAGGCTaGGTGAGGGAAAGTCACCCA +
Preference number: 2 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTDGNQG*VRESHP
Trigger: TGGGTGACTTTCCCTCACTCAGCCTTGGTTTCCATC...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTCCCCAGGACTGGCTaGTCCATGAATCCTCTGGGC +
Preference number: 2 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVFPRTG*SMNPLG
Trigger: GCCCAGAGGATTCATGGAGCAGCCAGTCCTGGGGAA...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCGAAACCCCCTTTGCCTaGCAGAATGCACATGAGGGA +
Preference number: 2 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTETPFA*QNAHEG
Trigger: TCCCTCATGTGCATTCTGGCAGGCAAAGGGGGTTTC...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGGCAGGCAAACCACTCTaGAGCAGGATGGAGGGTCGA +
Preference number: 2 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRAGKPL*SRMEGR
Trigger: TCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGC...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCCCAACGCTGCCCTATaGGTGAGCAGCAGGGTTAGC +
Preference number: 2 (lower is better)
Translates to: SAASGNTNHIREGVDVVSPNAAL*VSSRVS
Trigger: GCTAACCCTGCTGCTCACTCATAGGGCAGCGTTGGG...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGTTGATGGATCCCTCCTaGCAAAACAATCTTGAGGTA +
Preference number: 2 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQLMDPS*QNNLEV
Trigger: TACCTCAAGATTGTTTTGTCAGGAGGGATCCATCAA...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTGGACTGGCTGCTCCATaGATCCTCTGGGCACCTGTG +
Preference number: 2 (lower is better)
Translates to: SAASGNTNHIREGVDVVSGLAAP*ILWAPV
Trigger: CACAGGTGCCCAGAGGATTCATGGAGCAGCCAGTCC...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTCACTCTGAAGCAGGATaGAGGGTCGAGGACAAGGGC +
Preference number: 2 (lower is better)
Translates to: SAAKMSAASGNTNHIREGHSEAG*RVEDKG
Trigger: GCCCTTGTCCTCGACCCTCCATCCTGCTTCAGAGTG...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGGGAGGTACAAGACCTaGTTTCTAGCCCCAAATCTC +
Preference number: 2 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRGRYKT*FLAPNL
Trigger: GAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCC...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCGCAGCCTGTCCCCAGTaGGCTCCCCGAAGGGTTGTA +
Preference number: 2 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSAACPQ*APRRVV
Trigger: TACAACCCTTCGGGGAGCTCACTGGGGACAGGCTGC...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGGCTCCACTGGAACGTTaGAAAATTAACATTGAGTGT +
Preference number: 2 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQAPLER*KINIEC
Trigger: ACACTCAATGTTAATTTTTCAACGTTCCAGTGGAGC...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGGCATCCCTCAAGGCCTaGAACAGGAGGAGCTTTGCA +
Preference number: 2 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRASLKA*NRRSFA
Trigger: TGCAAAGCTCCTCCTGTTCCAGGCCTTGAGGGATGC...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCATCCCTCAAGGCCTaGAACAGGAGGAGCTTTGCA +
Preference number: 2 (lower is better)
Translates to: SAAKMSAASGNTNHIREGASLKA*NRRSFA
Trigger: TGCAAAGCTCCTCCTGTTCCAGGCCTTGAGGGATGC...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCGGACTGGCTGCTCCATaGATCCTCTGGGCACCTGTG +
Preference number: 2 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSGLAAP*ILWAPV
Trigger: CACAGGTGCCCAGAGGATTCATGGAGCAGCCAGTCC...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCTGCCAGAATGCACATaGGGGAAGGAAGGCAAACCC +
Preference number: 2 (lower is better)
Translates to: SAASGNTNHIREGVDVVSLPECT*GKEGKP
Trigger: GGGTTTGCCTTCCTTCCCTCATGTGCATTCTGGCAG...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGAGGGCCCTTCCATCTTaGCTGTTCTCCCAAATTACC +
Preference number: 2 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVRALPS*LFSQIT
Trigger: GGTAATTTGGGAGAACAGGCAAGATGGAAGGGCCCT...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCCCATTCCACATCATCTaGAAAATAGAGGGGAGTGCT +
Preference number: 2 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPPFHII*KIEGSA
Trigger: AGCACTCCCCTCTATTTTCCAGATGATGTGGAATGG...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
52% GC, longest homopolymer 7 nt, total homopolymer stretches 20 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGGGGAGGTTCATCCCTaGGAGCTCTGCAGGAGAAGG +
Preference number: 2 (lower is better)
Translates to: EISAAKMSAASGNTNHIRGEVHP*ELCRRR
Trigger: CCTTCTCCTGCAGAGCTCCCAGGGATGAACCTCCCC...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCGGGGAGGTTCATCCCTaGGAGCTCTGCAGGAGAAGG +
Preference number: 2 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIGEVHP*ELCRRR
Trigger: CCTTCTCCTGCAGAGCTCCCAGGGATGAACCTCCCC...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCCACCATCACCGACCATaGCGCCCACCGTTCTTCTCC +
Preference number: 2 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIHHHRP*RPPFFS
Trigger: GGAGAAGAACGGTGGGCGCCATGGTCGGTGATGGTG...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCAGGATCTATTGCTTCTaGCAAAAGGGCAAAAGCACC +
Preference number: 2 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTRIYCF*QKGKST
Trigger: GGTGCTTTTGCCCTTTTGCCAGAAGCAATAGATCCT...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGGATCTATTGCTTCTaGCAAAAGGGCAAAAGCACC +
Preference number: 2 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPRIYCF*QKGKST
Trigger: GGTGCTTTTGCCCTTTTGCCAGAAGCAATAGATCCT...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCACGCTGTGCCATGTaGAACTCATGCACAAGGCTT +
Preference number: 2 (lower is better)
Translates to: SAAKMSAASGNTNHIREGARCAM*NSCTRL
Trigger: AAGCCTTGTGCATGAGTTCCACATGGCACAGCGTGC...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTCACATTCCCCAGGACTaGCTGCTCCATGAATCCTCT +
Preference number: 2 (lower is better)
Translates to: SAAKMSAASGNTNHIREGHIPQD*LLHESS
Trigger: AGAGGATTCATGGAGCAGCCAGTCCTGGGGAATGTG...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCTTCCCCAGGACTGGCTaGTCCATGAATCCTCTGGGC +
Preference number: 2 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSFPRTG*SMNPLG
Trigger: GCCCAGAGGATTCATGGAGCAGCCAGTCCTGGGGAA...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGACACCATCACCGACCATaGCGCCCACCGTTCTTCTCC +
Preference number: 2 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGHHHRP*RPPFFS
Trigger: GGAGAAGAACGGTGGGCGCCATGGTCGGTGATGGTG...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTTGGGAACAAAAAGGGTaGTCTCCAGATCCCCCAGAA +
Preference number: 2 (lower is better)
Translates to: SAAKMSAASGNTNHIREGWEQKG*SPDPPE
Trigger: TTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCA...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAGCAGGCAAACCACTCTaGAGCAGGATGGAGGGTCGA +
Preference number: 2 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIAGKPL*SRMEGR
Trigger: TCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGC...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTTTTGAGTCAGGCTTGTaGCCAAGGGTGTGTAGGCAA +
Preference number: 2 (lower is better)
Translates to: SAASGNTNHIREGVDVVSFESGL*PRVCRQ
Trigger: TTGCCTACACACCCTTGGTCACAAGCCTGACTCAAA...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGATAGTTAAACCAGCCTaGACATGCCAGGCAGGCCCA +
Preference number: 2 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQIVKPA*TCQAGP
Trigger: TGGGCCTGCCTGGCATGTTCAGGCTGGTTTAACTAT...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGACTGCCAGAATGCACATaGGGGAAGGAAGGCAAACCC +
Preference number: 2 (lower is better)
Translates to: EISAAKMSAASGNTNHIRLPECT*GKEGKP
Trigger: GGGTTTGCCTTCCTTCCCTCATGTGCATTCTGGCAG...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGACATCCCTGGGAGCTCTaGAGGAGAAGGTCCCCATTC +
Preference number: 2 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGHPWEL*RRRSPF
Trigger: GAATGGGGACCTTCTCCTGCAGAGCTCCCAGGGATG...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCACCTTCTAGAGGTATaGCTTTCTAGCAACCCCGAG +
Preference number: 2 (lower is better)
Translates to: SAASGNTNHIREGVDVVSHLLEV*LSSNPE
Trigger: CTCGGGGTTGCTAGAAAGGCATACCTCTAGAAGGTG...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCGATCAAAGGATCTATTaGTTCTGGCAAAAGGGCAAA +
Preference number: 2 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPDQRIY*FWQKGK
Trigger: TTTGCCCTTTTGCCAGAAGCAATAGATCCTTTGATC...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGACCCCTAGCAGTTGCTaGTTTGACACATCACCTGCC +
Preference number: 2 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQTPSSC*FDTSPA
Trigger: GGCAGGTGATGTGTCAAAGCAGCAACTGCTAGGGGT...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGACACTCTGAAGCAGGATaGAGGGTCGAGGACAAGGGC +
Preference number: 2 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGHSEAG*RVEDKG
Trigger: GCCCTTGTCCTCGACCCTCCATCCTGCTTCAGAGTG...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCGTAGGCAAGGATGAGTaGGCAAGGCTGGAGGGGAAA +
Preference number: 2 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIVGKDE*ARLEGK
Trigger: TTTCCCCTCCAGCCTTGCCCACTCATCCTTGCCTAC...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGTAGGCAAGGATGAGTaGGCAAGGCTGGAGGGGAAA +
Preference number: 2 (lower is better)
Translates to: EISAAKMSAASGNTNHIRVGKDE*ARLEGK
Trigger: TTTCCCCTCCAGCCTTGCCCACTCATCCTTGCCTAC...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTAAGGGTTGTATAAAATaGGACAAGGGAGGCAAAGCC +
Preference number: 2 (lower is better)
Translates to: SAAKMSAASGNTNHIREGKGCIK*DKGGKA
Trigger: GGCTTTGCCTCCCTTGTCTCATTTTATACAACCCTT...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCGAAACCCCCTTTGCCTaGCAGAATGCACATGAGGGA +
Preference number: 2 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSETPFA*QNAHEG
Trigger: TCCCTCATGTGCATTCTGGCAGGCAAAGGGGGTTTC...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGTTCTCCCAAATTACCTaGCAACACTACCCCTTCCCC +
Preference number: 2 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQFSQIT*QHYPFP
Trigger: GGGGAAGGGGTAGTGTTGCCAGGTAATTTGGGAGAA...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CAA 90 bp GGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCTaGTCATACTGCCTGTGCCCTATCTCTCTTTGCCTTGGTTTCCTT +
Preference number: 2 (lower is better)
Translates to: GRYKTWFLAPNLLHI*SYCLCPISLCLGFL
Trigger: AAGGAAACCAAGGCAAAGAGAGATAGGGCACAGGCAGTATGACAAGATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTAAGGGTTGTATAAAATaGGACAAGGGAGGCAAAGCC +
Preference number: 2 (lower is better)
Translates to: SAASGNTNHIREGVDVVSKGCIK*DKGGKA
Trigger: GGCTTTGCCTCCCTTGTCTCATTTTATACAACCCTT...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTTTGATGGATCCCTCCTaGCAAAACAATCTTGAGGTA +
Preference number: 2 (lower is better)
Translates to: SAAKMSAASGNTNHIREGLMDPS*QNNLEV
Trigger: TACCTCAAGATTGTTTTGTCAGGAGGGATCCATCAA...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGACACCTTCTAGAGGTATaGCTTTCTAGCAACCCCGAG +
Preference number: 2 (lower is better)
Translates to: EISAAKMSAASGNTNHIRHLLEV*LSSNPE
Trigger: CTCGGGGTTGCTAGAAAGGCATACCTCTAGAAGGTG...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGCAAACCCCTAGCAGTTaGTGCTTTGACACATCACCT +
Preference number: 2 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQQTPSS*CFDTSP
Trigger: AGGTGATGTGTCAAAGCAGCAACTGCTAGGGGTTTG...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGATGTCAATACCGTGGCTaGCTGGGAACAAAAAGGGTG +
Preference number: 2 (lower is better)
Translates to: EISAAKMSAASGNTNHIRCQYRG*LGTKRV
Trigger: CACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACA...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCTTCTCCCAAATTACCTaGCAACACTACCCCTTCCCC +
Preference number: 2 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIFSQIT*QHYPFP
Trigger: GGGGAAGGGGTAGTGTTGCCAGGTAATTTGGGAGAA...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGGGAGGTACAAGACCTaGTTTCTAGCCCCAAATCTC +
Preference number: 2 (lower is better)
Translates to: EISAAKMSAASGNTNHIRGRYKT*FLAPNL
Trigger: GAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCC...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAGCACGCTGTGCCATGTaGAACTCATGCACAAGGCTT +
Preference number: 2 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIARCAM*NSCTRL
Trigger: AAGCCTTGTGCATGAGTTCCACATGGCACAGCGTGC...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGACACATTCCCCAGGACTaGCTGCTCCATGAATCCTCT +
Preference number: 2 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGHIPQD*LLHESS
Trigger: AGAGGATTCATGGAGCAGCCAGTCCTGGGGAATGTG...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAAATACCGTGGCTGCCTaGGAACAAAAAGGGTGGTCT +
Preference number: 2 (lower is better)
Translates to: EISAAKMSAASGNTNHIRNTVAA*EQKGWS
Trigger: AGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATT...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGATCAAAGGATCTATTaGTTCTGGCAAAAGGGCAAA +
Preference number: 2 (lower is better)
Translates to: SAAKMSAASGNTNHIREGDQRIY*FWQKGK
Trigger: TTTGCCCTTTTGCCAGAAGCAATAGATCCTTTGATC...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCTTAGCAAGCTCCACTaGAACGTTGAAAAATTAACA +
Preference number: 2 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVLSKLH*NVEKLT
Trigger: TGTTAATTTTTCAACGTTCCAGTGGAGCTTGCTAAG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATACCACTGTCAATACCGTaGCTGCCTGGGAACAAAAAG +
Preference number: 2 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIPLSIP*LPGNKK
Trigger: CTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTGG...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CAA 90 bp CCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTaGTTTCTCAGATACATAGGATGGACCTGTTTTCTTTCTGCTAAT +
Preference number: 2 (lower is better)
Translates to: PPRQGIQTTYERVLM*FLRYIGWTCFLSAN
Trigger: ATTAGCAGAAAGAAAACAGGTCCATCCTATGTATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGAAGGCTCTGGATCAATaGTTCTGGAAACCACTTAAG +
Preference number: 2 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQKALDQ*FWKPLK
Trigger: CTTAAGTGGTTTCCAGAATCATTGATCCAGAGCCTT...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTGCTCCACTGGAACGTTaGAAAATTAACATTGAGTGT +
Preference number: 2 (lower is better)
Translates to: SAASGNTNHIREGVDVVSAPLER*KINIEC
Trigger: ACACTCAATGTTAATTTTTCAACGTTCCAGTGGAGC...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CAA 90 bp ACAGAGTTCCTTAGCAAGCTCCACTGGAACGTTGAAAAATTAACATaGAGTGTTTACTGTGCACGCTGTGCCATGTGGAACTCATGCACA +
Preference number: 2 (lower is better)
Translates to: TEFLSKLHWNVEKLT*SVYCARCAMWNSCT
Trigger: TGTGCATGAGTTCCACATGGCACAGCGTGCACAGTAAACACTCAATGTTAATTTTTCAACGTTCCAGTGGAGCTTGCTAAGGAACTCTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CAA 90 bp AAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTaGATGTTGTTTCTCAGATACATAGGATGGACCTGTTTTCTTTCT +
Preference number: 2 (lower is better)
Translates to: KCPPRQGIQTTYERV*MLFLRYIGWTCFLS
Trigger: AGAAAGAAAACAGGTCCATCCTATGTATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR TCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAAAGGCTCTGGATCAATaGTTCTGGAAACCACTTAAG +
Preference number: 2 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIKALDQ*FWKPLK
Trigger: CTTAAGTGGTTTCCAGAATCATTGATCCAGAGCCTT...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR GCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAAGATACATTTTAAACTaGATGGTATGGCCCACTGTC +
Preference number: 2 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIRYILN*MVWPTV
Trigger: GACAGTGGGCCATACCATGCAGTTTAAAATGTATCT...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCCTTAGCAAGCTCCACTaGAACGTTGAAAAATTAACA +
Preference number: 2 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSLSKLH*NVEKLT
Trigger: TGTTAATTTTTCAACGTTCCAGTGGAGCTTGCTAAG...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CCA 72 bp GCAGGCAGCTCGCTACCCACTCACATTCCCCAGGACTaGCTGCTCCATGAATCCTCTGGGCACCTGTGCCCA +
Preference number: 3 (lower is better)
Translates to: AGSSLPTHIPQD*LLHESSGHLCP
Trigger: TGGGCACAGGTGCCCAGAGGATTCATGGAGCAGCCAGTCCTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CCA 72 bp ATTCCTAAGCAGCCATGTTCTCACCATCACCGACCATaGCGCCCACCGTTCTTCTCCCCTGACCTTGCCCCC +
Preference number: 3 (lower is better)
Translates to: IPKQPCSHHHRP*RPPFFSPDLAP
Trigger: GGGGGCAAGGTCAGGGGAGAAGAACGGTGGGCGCCATGGTCGGTGATGGTGAGAACATGGCTGCTTAGGAAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR GCA 72 bp ATGCACATGAGGGAAGGAAGGCAAACCCCTAGCAGTTaGTGCTTTGACACATCACCTGCCCCAGCAGCAGGC +
Preference number: 3 (lower is better)
Translates to: MHMREGRQTPSS*CFDTSPAPAAG
Trigger: GCCTGCTGCTGGGGCAGGTGATGTGTCAAAGCAGCAACTGCTAGGGGTTTGCCTTCCTTCCCTCATGTGCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CAA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGACCATAAGTCACTGTTaGAGTCAGGCTTGTGACCAA +
Preference number: 3 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQTISHC*SQACDQ
Trigger: TTGGTCACAAGCCTGACTCAAACAGTGACTTATGGT...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR GCA 72 bp AAACTGCATGGTATGGCCCACTGTCAATACCGTGGCTaGCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCC +
Preference number: 3 (lower is better)
Translates to: KLHGMAHCQYRG*LGTKRVVSRSP
Trigger: GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTGGGCCATACCATGCAGTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CCA 72 bp TGCATGGTATGGCCCACTGTCAATACCGTGGCTGCCTaGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAA +
Preference number: 3 (lower is better)
Translates to: CMVWPTVNTVAA*EQKGWSPDPPE
Trigger: TTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTGGGCCATACCATGCA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CAA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCGGAACAGGAGGAGCTTaGCATTCCAGTAGATTTTGC +
Preference number: 3 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTGTGGA*HSSRFC
Trigger: GCAAAATCTACTGGAATGCAAAGCTCCTCCTGTTCC...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CAA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGGGATCAAAGGATCTATaGCTTCTGGCAAAAGGGCAA +
Preference number: 3 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVGSKDL*LLAKGQ
Trigger: TTGCCCTTTTGCCAGAAGCAATAGATCCTTTGATCC...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CAA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGACTAGCAGTTGCTGCTTaGACACATCACCTGCCCCAG +
Preference number: 3 (lower is better)
Translates to: EISAAKMSAASGNTNHIRLAVAA*THHLPQ
Trigger: CTGGGGCAGGTGATGTGTCAAAGCAGCAACTGCTAG...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR TCA 72 bp AATTATCCCCATTTTAGGGTTGATGGAAACCAAGGCTaGGTGAGGGAAAGTCACCCACCCAACGCTGCCCTA +
Preference number: 3 (lower is better)
Translates to: NYPHFRVDGNQG*VRESHPPNAAL
Trigger: TAGGGCAGCGTTGGGTGGGTGACTTTCCCTCACTCAGCCTTGGTTTCCATCAACCCTAAAATGGGGATAATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CCA 72 bp AGGTGTCATGGAGACCTGCCCACCAGGGCCAGAATCTaGACAGTGATGGAGAAATTTCTGCTGCAAAAATGT +
Preference number: 3 (lower is better)
Translates to: RCHGDLPTRARI*TVMEKFLLQKC
Trigger: ACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCTGGCCCTGGTGGGCAGGTCTCCATGACACCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CAA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAAGGAAGAAACCCCCTTaGCCTGCCAGAATGCACATG +
Preference number: 3 (lower is better)
Translates to: EISAAKMSAASGNTNHIRRKKPP*PARMHM
Trigger: CATGTGCATTCTGGCAGGCAAAGGGGGTTTCTTCCT...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CCA 72 bp AAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATaGCACCATCTAGCCCACCTGGTGAAATCCAAAGCG +
Preference number: 3 (lower is better)
Translates to: KHYQPHQTVEVK*HHLAHLVKSKA
Trigger: CGCTTTGGATTTCACCAGGTGGGCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CAA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAACAGGAGGAGCTTaGCATTCCAGTAGATTTTGC +
Preference number: 3 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQGTGGA*HSSRFC
Trigger: GCAAAATCTACTGGAATGCAAAGCTCCTCCTGTTCC...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR GCA 72 bp AATAGCATCCCTCAAGGCCTGGAACAGGAGGAGCTTTaGATTCCAGTAGATTTTGCTGATGCCCTCAATAGA +
Preference number: 3 (lower is better)
Translates to: NSIPQGLEQEEL*IPVDFADALNR
Trigger: TCTATTGAGGGCATCAGCAAAATCTACTGGAATGCAAAGCTCCTCCTGTTCCAGGCCTTGAGGGATGCTATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CAA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAACCATAAGTCACTGTTaGAGTCAGGCTTGTGACCAA +
Preference number: 3 (lower is better)
Translates to: EISAAKMSAASGNTNHIRTISHC*SQACDQ
Trigger: TTGGTCACAAGCCTGACTCAAACAGTGACTTATGGT...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CAA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCTATCTCTCTTTGCCTaGGTTTCCTTATCTCCAAAT +
Preference number: 3 (lower is better)
Translates to: SAASGNTNHIREGVDVVSLSLFA*VSLSPN
Trigger: ATTTGGAGATAAGGAAACCAAGGCAAAGAGAGATAG...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR-3UTR CAA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCGTTGAAAAATTAACATaGAGTGTTTACTGTGCACGC +
Preference number: 3 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSVEKLT*SVYCAR
Trigger: GCGTGCACAGTAAACACTCAATGTTAATTTTTCAAC...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CCA 72 bp GAGAGGGTGTTGATGTTGTTTCTCAGATACATAGGATaGACCTGTTTTCTTTCTGCTAATAGAAAGCAATCA +
Preference number: 3 (lower is better)
Translates to: ERVLMLFLRYIG*TCFLSANRKQS
Trigger: TGATTGCTTTCTATTAGCAGAAAGAAAACAGGTCCATCCTATGTATCTGAGAAACAACATCAACACCCTCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGTTCACAGCCGGGGGCTaGGCGGCATTCAGAATCCCG +
Preference number: 4 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQFTAGG*AAFRIP
Trigger: CGGGATTCTGAATGCCGCGCAGCCCCCGGCTGTGAA...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGCACCATCACCGACCATaGCGCCCACCGTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQHHHRP*RPPFFS
Trigger: GGAGAAGAACGGTGGGCGCCATGGTCGGTGATGGTG...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGCTGCCAGGGCAGGCCTaGGCACGAGCTTCCTTGTCT +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRLPGQA*ARASLS
Trigger: AGACAAGGAAGCTCGTGCTCAGGCCTGCCCTGGCAG...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGCAGGACCGAGGCTTCTaGGTCGGAGAGGTCACCCAC +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRQDRGF*VGEVTH
Trigger: GTGGGTGACCTCTCCGACTCAGAAGCCTCGGTCCTG...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACAACCGTTCTTCTCCCCTaGCCTTGCCCCCAAAGGCCC +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTTVLLP*PCPQRP
Trigger: GGGCCTTTGGGGGCAAGGTCAGGGGAGAAGAACGGT...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGACCGTTCTTCTCCCCTaGCCTTGCCCCCAAAGGCCC +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRTVLLP*PCPQRP
Trigger: GGGCCTTTGGGGGCAAGGTCAGGGGAGAAGAACGGT...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGCAGCCTGTCCCCAGTaGGCTCCCCGAAGGGTTGTA +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRAACPQ*APRRVV
Trigger: TACAACCCTTCGGGGAGCTCACTGGGGACAGGCTGC...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGCCACGACCCTACCACTaGGCCAGGCCAAGAGCTGGT +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRPRPYH*ARPRAG
Trigger: ACCAGCTCTTGGCCTGGCGCAGTGGTAGGGTCGTGG...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGAGAGGTTGCTCACTGTaGTGCGCCAAATGTAGAGGG +
Preference number: 4 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQRGCSL*CAKCRG
Trigger: CCCTCTACATTTGGCGCAGCACAGTGAGCAACCTCT...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGCACCATCACCGACCATaGCGCCCACCGTTCTTCTCC +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRHHHRP*RPPFFS
Trigger: GGAGAAGAACGGTGGGCGCCATGGTCGGTGATGGTG...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCGCAGCCAGGGGCTGGTaGGCTAGCAAGATGATTGTG +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPAARGW*ASKMIV
Trigger: CACAATCATCTTGCTAGCTCACCAGCCCCTGGCTGC...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGCAGCCAGGGGCTGGTaGGCTAGCAAGATGATTGTG +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRAARGW*ASKMIV
Trigger: CACAATCATCTTGCTAGCTCACCAGCCCCTGGCTGC...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGCAGGCAAACCACTCTaGAGCAGGATGGAGGGTCGA +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRAGKPL*SRMEGR
Trigger: TCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGC...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGACGCTGCCCTATGAGTaGGCAGCAGGGTTAGCCTCT +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRTLPYE*AAGLAS
Trigger: AGAGGCTAACCCTGCTGCTCACTCATAGGGCAGCGT...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCGGGAGTGGCAGAGGTTaGTCACTGTGCTGCGCCAAA +
Preference number: 4 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTGSGRG*SLCCAK
Trigger: TTTGGCGCAGCACAGTGAGCAACCTCTGCCACTCCC...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR GCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCCACGACCCTACCACTaGGCCAGGCCAAGAGCTGGT +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVPRPYH*ARPRAG
Trigger: ACCAGCTCTTGGCCTGGCGCAGTGGTAGGGTCGTGG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCCGGCCGCGAGCCTGCTaGGGGGCACTTCGGGGCTCA +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSRPRAC*GALRGS
Trigger: TGAGCCCCGAAGTGCCCCCCAGCAGGCTCGCGGCCG...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGTCTGCAGCTGGGGAGTaGCAGAGGTTGCTCACTGTG +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRSAAGE*QRLLTV
Trigger: CACAGTGAGCAACCTCTGCCACTCCCCAGCTGCAGA...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCCACCACCACCACGTTaGGCCCGTGTGGCGGAAATC +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVPPPPR*ARVAEI
Trigger: GATTTCCGCCACACGGGCCCAACGTGGTGGTGGTGG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGGTAGTAGGCTGTGCCTaGGCTGACATACACGAATGT +
Preference number: 4 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQVVGCA*ADIHEC
Trigger: ACATTCGTGTATGTCAGCCCAGGCACAGCCTACTAC...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCCACTCTGAAGCAGGATaGAGGGTCGAGGACAAGGGC +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPHSEAG*RVEDKG
Trigger: GCCCTTGTCCTCGACCCTCCATCCTGCTTCAGAGTG...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGGTGCAAACCAGTTGCTaGCATCTGACGTGTAGTACT +
Preference number: 4 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQVQTSC*HLTCST
Trigger: AGTACTACACGTCAGATGTCAGCAACTGGTTTGCAC...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCGGTGAGCTAGCAAGATaGTTGTGTGGTCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPGELAR*LCGLGC
Trigger: GCAGCCCAGACCACACAATCATCTTGCTAGCTCACC...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCCCAACGCTGCCCTATaGGTGAGCAGCAGGGTTAGC +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVPNAAL*VSSRVS
Trigger: GCTAACCCTGCTGCTCACTCATAGGGCAGCGTTGGG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCCTGCCAGAATGCACATaGGGGAAGGAAGGCAAACCC +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPLPECT*GKEGKP
Trigger: GGGTTTGCCTTCCTTCCCTCATGTGCATTCTGGCAG...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
57% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAGGAAGGCCGGTCCACTaGCTGCGTTCCGCCGGCCGC +
Preference number: 4 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIGRPVH*LRSAGR
Trigger: GCGGCCGGCGGAACGCAGGCAGTGGACCGGCCTTCC...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR GCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACACCCCCACCAGTTCTGTaGTGGTGGACTCTGGAAATG +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTPPPVL*WWTLEM
Trigger: CATTTCCAGAGTCCACCAGCACAGAACTGGTGGGGG...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR GCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCGCGCCTAGGGACAGCTaGCTGAAGATGGCCATTTTC +
Preference number: 4 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTAPRDS*LKMAIF
Trigger: GAAAATGGCCATCTTCAGGCAGCTGTCCCTAGGCGC...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR GCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCGTTCAGGGAGACCGCTaGAGGATGAGCTCTGTGATC +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPVQGDR*RMSSVI
Trigger: GATCACAGAGCTCATCCTGCAGCGGTCTCCCTGAAC...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGTGGAGAAATTTCTGCTaGAAAAATGTCCGCCGCGTC +
Preference number: 4 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQWRNFC*KNVRRV
Trigger: GACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCA...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCCACGTTGGGCCCGTGTaGCGGAAATCTTCACGTTCT +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPHVGPV*RKSSRS
Trigger: AGAACGTGAAGATTTCCGCCACACGGGCCCAACGTG...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
57% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCTGCTACCCAGCCTCATaGGTATCCCGTAGTAGGCTG +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPCYPAS*VSRSRL
Trigger: CAGCCTACTACGGGATACCCATGAGGCTGGGTAGCA...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGGGGGAGGTTCATCCCTaGGAGCTCTGCAGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVGEVHP*ELCRRR
Trigger: CCTTCTCCTGCAGAGCTCCCAGGGATGAACCTCCCC...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCTGCCAGGGCAGGCCTaGGCACGAGCTTCCTTGTCT +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSLPGQA*ARASLS
Trigger: AGACAAGGAAGCTCGTGCTCAGGCCTGCCCTGGCAG...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTGAATCCCGGCCACGCTaGGCACAGCAGTCACTCCCA +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSESRPR*AQQSLP
Trigger: TGGGAGTGACTGCTGTGCTCAGCGTGGCCGGGATTC...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCGCCCAAGTGAATGTCTaGGAGGAGCACGATCTTGAG +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPAQVNV*EEHDLE
Trigger: CTCAAGATCGTGCTCCTCTCAGACATTCACTTGGGC...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCCACCCACAATCACCGTaGTGTCTGGTTCCAGCACAT +
Preference number: 4 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTHPQSP*CLVPAH
Trigger: ATGTGCTGGAACCAGACATCACGGTGATTGTGGGTG...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGATAGTTAAACCAGCCTaGACATGCCAGGCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRIVKPA*TCQAGP
Trigger: TGGGCCTGCCTGGCATGTTCAGGCTGGTTTAACTAT...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGTTCAAGGGGAAGATCTaGCCAGCATGTGTGTGCCCA +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRFKGKI*PACVCP
Trigger: TGGGCACACACATGCTGGGCAGATCTTCCCCTTGAA...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACATTCAAGGGGAAGATCTaGCCAGCATGTGTGTGCCCA +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTFKGKI*PACVCP
Trigger: TGGGCACACACATGCTGGGCAGATCTTCCCCTTGAA...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCCAAACATTTCCATCTTaGTCCTGCCCACTGTGGGGC +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPQTFPS*SCPLWG
Trigger: GCCCCACAGTGGGCAGGACCAAGATGGAAATGTTTG...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
56% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGCACATTCCCCAGGACTaGCTGCTCCATGAATCCTCT +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRHIPQD*LLHESS
Trigger: AGAGGATTCATGGAGCAGCCAGTCCTGGGGAATGTG...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGCTTGAGGTTGTTCATTaGGGCAGGCAGCTGATGGAT +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRLEVVH*GRQLMD
Trigger: ATCCATCAGCTGCCTGCCTCAATGAACAACCTCAAG...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAGGAGCACGATCTTaGGGTTGTTCATTGAGGCAG +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPRGARS*GCSLRQ
Trigger: CTGCCTCAATGAACAACCTCAAGATCGTGCTCCTCT...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTGCACCGAGATGTGAATaGAGCTGGCCCAGAGGAGCG +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSAPRCE*SWPRGA
Trigger: CGCTCCTCTGGGCCAGCTTCATTCACATCTCGGTGC...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGGTAGGCACCGAGATGTaGATGAAGCTGGCCCAGAGG +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRVGTEM*MKLAQR
Trigger: CCTCTGGGCCAGCTTCATTCACATCTCGGTGCCTAC...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCACTCATGATTGCCTGTaGCGAAGTAGGCACCGAGAT +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPTHDCL*RSRHRD
Trigger: ATCTCGGTGCCTACTTCGTCACAGGCAATCATGAGT...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCACTCATGATTGCCTGTaGCGAAGTAGGCACCGAGAT +
Preference number: 4 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTTHDCL*RSRHRD
Trigger: ATCTCGGTGCCTACTTCGTCACAGGCAATCATGAGT...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGCAGCCTGTCCCCAGTaGGCTCCCCGAAGGGTTGTA +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQAACPQ*APRRVV
Trigger: TACAACCCTTCGGGGAGCTCACTGGGGACAGGCTGC...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGACGCTGCCCTATGAGTaGGCAGCAGGGTTAGCCTCT +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRTLPYE*AAGLAS
Trigger: AGAGGCTAACCCTGCTGCTCACTCATAGGGCAGCGT...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGCATACGAGAGGGTGTTaGTGTTGTTTCTCAGATACA +
Preference number: 4 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQHTRGC*CCFSDT
Trigger: TGTATCTGAGAAACAACATCAACACCCTCTCGTATG...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGTTCACAGCCGGGGGCTaGGCGGCATTCAGAATCCCG +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQFTAGG*AAFRIP
Trigger: CGGGATTCTGAATGCCGCGCAGCCCCCGGCTGTGAA...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTTCCATCTTGGTCCTaGCCACTGTGGGGCCCAAGT +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVFPSWS*PLWGPS
Trigger: ACTTGGGCCCCACAGTGGGCAGGACCAAGATGGAAA...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCTGCCCAGCATGTGTGTaGCCAGAAAGGATCAGGTTA +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPCPACV*PERIRL
Trigger: TAACCTGATCCTTTCTGGGCACACACATGCTGGGCA...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCTGCCCAGCATGTGTGTaGCCAGAAAGGATCAGGTTA +
Preference number: 4 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTCPACV*PERIRL
Trigger: TAACCTGATCCTTTCTGGGCACACACATGCTGGGCA...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCCACCTTCTAGAGGTATaGCTTTCTAGCAACCCCGAG +
Preference number: 4 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTHLLEV*LSSNPE
Trigger: CTCGGGGTTGCTAGAAAGGCATACCTCTAGAAGGTG...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGGGCCCTTCCATCTTaGCTGTTCTCCCAAATTACC +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPRALPS*LFSQIT
Trigger: GGTAATTTGGGAGAACAGGCAAGATGGAAGGGCCCT...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTAAAGAAACTGGAATaGGCCAGGGCCAGAAATGCC +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRVKKLE*ARARNA
Trigger: GGCATTTCTGGCCCTGGCCCATTCCAGTTTCTTTAC...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGATATCTGGCCGAGCCTaGAGAGCTCTCTTGGCAGCC +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRISGRA*RALLAA
Trigger: GGCTGCCAAGAGAGCTCTCCAGGCTCGGCCAGATAT...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCGATCAGGTTAATATCTaGCCGAGCCTGGAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTDQVNI*PSLESS
Trigger: AGAGCTCTCCAGGCTCGGCCAGATATTAACCTGATC...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGTTCTCCCAAATTACCTaGCAACACTACCCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRFSQIT*QHYPFP
Trigger: GGGGAAGGGGTAGTGTTGCCAGGTAATTTGGGAGAA...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCGGGAGGTACAAGACCTaGTTTCTAGCCCCAAATCTC +
Preference number: 4 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTGRYKT*FLAPNL
Trigger: GAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCC...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACAAATACCGTGGCTGCCTaGGAACAAAAAGGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTNTVAA*EQKGWS
Trigger: AGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATT...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCACAGTGGAAGTGAAATaGCACCATCTAGCCCACCTG +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPTVEVK*HHLAHL
Trigger: CAGGTGGGCTAGATGGTGCCATTTCACTTCCACTGT...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAATCCCGGCCACGCTaGGCACAGCAGTCACTCCCA +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRESRPR*AQQSLP
Trigger: TGGGAGTGACTGCTGTGCTCAGCGTGGCCGGGATTC...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCACCCACAATCACCGTaGTGTCTGGTTCCAGCACAT +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVHPQSP*CLVPAH
Trigger: ATGTGCTGGAACCAGACATCACGGTGATTGTGGGTG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGACAGGACCGAGGCTTCTaGGTCGGAGAGGTCACCCAC +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRQDRGF*VGEVTH
Trigger: GTGGGTGACCTCTCCGACTCAGAAGCCTCGGTCCTG...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACAGTGCAAACCAGTTGCTaGCATCTGACGTGTAGTACT +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTVQTSC*HLTCST
Trigger: AGTACTACACGTCAGATGTCAGCAACTGGTTTGCAC...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGCTGCCAGAATGCACATaGGGGAAGGAAGGCAAACCC +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRLPECT*GKEGKP
Trigger: GGGTTTGCCTTCCTTCCCTCATGTGCATTCTGGCAG...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGTTGTCTTCTCAAGGCTaGCCACGACCCTACCACTGC +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRLSSQG*PRPYHC
Trigger: GCAGTGGTAGGGTCGTGGGCAGCCTTGAGAAGACAA...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAAGCAGTCACTCCCACTaGCAGGGCAGGCCTGAGCAC +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRSSHSH*QGRPEH
Trigger: GTGCTCAGGCCTGCCCTGGCAGTGGGAGTGACTGCT...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTTTCCCCAGGACTGGCTaGTCCATGAATCCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSFPRTG*SMNPLG
Trigger: GCCCAGAGGATTCATGGAGCAGCCAGTCCTGGGGAA...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGACCCCTAGCAGTTGCTaGTTTGACACATCACCTGCC +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVTPSSC*FDTSPA
Trigger: GGCAGGTGATGTGTCAAAGCAGCAACTGCTAGGGGT...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACACAAACCCCTAGCAGTTaGTGCTTTGACACATCACCT +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTQTPSS*CFDTSP
Trigger: AGGTGATGTGTCAAAGCAGCAACTGCTAGGGGTTTG...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTCACGTTGGGCCCGTGTaGCGGAAATCTTCACGTTCT +
Preference number: 4 (lower is better)
Translates to: SAAKMSAASGNTNHIREGHVGPV*RKSSRS
Trigger: AGAACGTGAAGATTTCCGCCACACGGGCCCAACGTG...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGACCACCACCACCACGTTaGGCCCGTGTGGCGGAAATC +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRPPPPR*ARVAEI
Trigger: GATTTCCGCCACACGGGCCCAACGTGGTGGTGGTGG...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTAGCAAGATGATTGTGTaGTCTGGGCTGCAGCCCTCC +
Preference number: 4 (lower is better)
Translates to: SAAKMSAASGNTNHIREGSKMIV*SGLQPS
Trigger: GGAGGGCTGCAGCCCAGACCACACAATCATCTTGCT...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGGTAGGCAAGGATGAGTaGGCAAGGCTGGAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRVGKDE*ARLEGK
Trigger: TTTCCCCTCCAGCCTTGCCCACTCATCCTTGCCTAC...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGGGAGGTTCATCCCTaGGAGCTCTGCAGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQGEVHP*ELCRRR
Trigger: CCTTCTCCTGCAGAGCTCCCAGGGATGAACCTCCCC...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGGCACGCTGTGCCATGTaGAACTCATGCACAAGGCTT +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVARCAM*NSCTRL
Trigger: AAGCCTTGTGCATGAGTTCCACATGGCACAGCGTGC...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTGGACTAAAGGTGTCATaGAGACCTGCCCACCAGGGC +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSGLKVS*RPAHQG
Trigger: GCCCTGGTGGGCAGGTCTCCATGACACCTTTAGTCC...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGATGGACACGAAGACAGTaGCAGCAGCCAGGGTGGCCT +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRWTRRQ*QQPGWP
Trigger: AGGCCACCCTGGCTGCTGTCACTGTCTTCGTGTCCA...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGCACCGAGATGTGAATaGAGCTGGCCCAGAGGAGCG +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRAPRCE*SWPRGA
Trigger: CGCTCCTCTGGGCCAGCTTCATTCACATCTCGGTGC...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACACCAGTTGCTGACATCTaGCGTGTAGTACTCATGATT +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTPVADI*RVVLMI
Trigger: AATCATGAGTACTACACGTCAGATGTCAGCAACTGG...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCGGACTGGCTGCTCCATaGATCCTCTGGGCACCTGTG +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIGLAAP*ILWAPV
Trigger: CACAGGTGCCCAGAGGATTCATGGAGCAGCCAGTCC...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGAAGCAGTCACTCCCACTaGCAGGGCAGGCCTGAGCAC +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGSSHSH*QGRPEH
Trigger: GTGCTCAGGCCTGCCCTGGCAGTGGGAGTGACTGCT...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCCTTGTCAAGATCCATaGCATGGCCAGAGTAGTGCA +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVPCQDP*HGQSSA
Trigger: TGCACTACTCTGGCCATGGCATGGATCTTGACAAGG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACAATTCAGGAGATAGGCTaGTACGTTCAAGGGGAAGAT +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTIQEIG*YVQGED
Trigger: ATCTTCCCCTTGAACGTAGCAGCCTATCTCCTGAAT...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTGTCAATACCGTGGCTaGCTGGGAACAAAAAGGGTG +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVCQYRG*LGTKRV
Trigger: CACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACA...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGGTAGTAGGCTGTGCCTaGGCTGACATACACGAATGT +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVVVGCA*ADIHEC
Trigger: ACATTCGTGTATGTCAGCCCAGGCACAGCCTACTAC...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGAGGATCTATTGCTTCTaGCAAAAGGGCAAAAGCACC +
Preference number: 4 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRRIYCF*QKGKST
Trigger: GGTGCTTTTGCCCTTTTGCCAGAAGCAATAGATCCT...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCCACTGTCAATACCGTaGCTGCCTGGGAACAAAAAG +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVPLSIP*LPGNKK
Trigger: CTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTGG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACAACCAGGGCCAGAATCTaGACAGTGATGGAGAAATTT +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTTRARI*TVMEKF
Trigger: AAATTTCTCCATCACTGTCCAGATTCTGGCCCTGGT...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCTAGGGACAGCTGCCTaGAGATGGCCATTTTCTCTG +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSLGTAA*RWPFSL
Trigger: CAGAGAAAATGGCCATCTTCAGGCAGCTGTCCCTAG...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTGCCCAAGTGAATGTCTaGGAGGAGCACGATCTTGAG +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSAQVNV*EEHDLE
Trigger: CTCAAGATCGTGCTCCTCTCAGACATTCACTTGGGC...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCACTGTGGGGCCCAAGTaGATGTCTGAGAGGAGCACG +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSTVGPK*MSERST
Trigger: CGTGCTCCTCTCAGACATTCACTTGGGCCCCACAGT...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCACTGTGGGGCCCAAGTaGATGTCTGAGAGGAGCACG +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHITVGPK*MSERST
Trigger: CGTGCTCCTCTCAGACATTCACTTGGGCCCCACAGT...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCGCAGGCAAACCACTCTaGAGCAGGATGGAGGGTCGA +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSAGKPL*SRMEGR
Trigger: TCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGC...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTGATGGAAACCAAGGCTaGGTGAGGGAAAGTCACCCA +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSDGNQG*VRESHP
Trigger: TGGGTGACTTTCCCTCACTCAGCCTTGGTTTCCATC...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACATTGATGGATCCCTCCTaGCAAAACAATCTTGAGGTA +
Preference number: 4 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTLMDPS*QNNLEV
Trigger: TACCTCAAGATTGTTTTGTCAGGAGGGATCCATCAA...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCAGGGATTCCAGAAGTaGAAACCAGTTGCTGACATC +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVQGFQK*KPVADI
Trigger: GATGTCAGCAACTGGTTTGCACTTCTGGAATCCCTG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGCCTTGTCAAGATCCATaGCATGGCCAGAGTAGTGCA +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRPCQDP*HGQSSA
Trigger: TGCACTACTCTGGCCATGGCATGGATCTTGACAAGG...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGACATCCCTGGGAGCTCTaGAGGAGAAGGTCCCCATTC +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRHPWEL*RRRSPF
Trigger: GAATGGGGACCTTCTCCTGCAGAGCTCCCAGGGATG...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGAGGGCCCTTCCATCTTaGCTGTTCTCCCAAATTACC +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRRALPS*LFSQIT
Trigger: GGTAATTTGGGAGAACAGGCAAGATGGAAGGGCCCT...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCAAACCCCTAGCAGTTaGTGCTTTGACACATCACCT +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVQTPSS*CFDTSP
Trigger: AGGTGATGTGTCAAAGCAGCAACTGCTAGGGGTTTG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGGCAGCTGATGGATaGGCACCTCCACAGTTTTCA +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSQAADG*APPQFS
Trigger: TGAAAACTGTGGAGGTGCCCATCCATCAGCTGCCTG...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCATATCTGGCCGAGCCTaGAGAGCTCTCTTGGCAGCC +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSISGRA*RALLAA
Trigger: GGCTGCCAAGAGAGCTCTCCAGGCTCGGCCAGATAT...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGTGCTACCCAGCCTCATaGGTATCCCGTAGTAGGCTG +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQCYPAS*VSRSRL
Trigger: CAGCCTACTACGGGATACCCATGAGGCTGGGTAGCA...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCCACTCTGAAGCAGGATaGAGGGTCGAGGACAAGGGC +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSHSEAG*RVEDKG
Trigger: GCCCTTGTCCTCGACCCTCCATCCTGCTTCAGAGTG...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGCATCCCTCAAGGCCTaGAACAGGAGGAGCTTTGCA +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQASLKA*NRRSFA
Trigger: TGCAAAGCTCCTCCTGTTCCAGGCCTTGAGGGATGC...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGAATACCGTGGCTGCCTaGGAACAAAAAGGGTGGTCT +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRNTVAA*EQKGWS
Trigger: AGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATT...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGACAGTGGAAGTGAAATaGCACCATCTAGCCCACCTG +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRTVEVK*HHLAHL
Trigger: CAGGTGGGCTAGATGGTGCCATTTCACTTCCACTGT...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGAGTAGGCACCGAGATGTaGATGAAGCTGGCCCAGAGG +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGVGTEM*MKLAQR
Trigger: CCTCTGGGCCAGCTTCATTCACATCTCGGTGCCTAC...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCCAGTTGCTGACATCTaGCGTGTAGTACTCATGATT +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVPVADI*RVVLMI
Trigger: AATCATGAGTACTACACGTCAGATGTCAGCAACTGG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGGTGAGCTAGCAAGATaGTTGTGTGGTCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRGELAR*LCGLGC
Trigger: GCAGCCCAGACCACACAATCATCTTGCTAGCTCACC...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCCATAAGACCACACAATaGTGGCATTCAAGAGAAAGA +
Preference number: 4 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPHKTTQ*WHSRER
Trigger: TCTTTCTCTTGAATGCCATCATTGTGTGGTCTTATG...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
50% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTCCAGAATCTGGACAGTaGTGGAGAAATTTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SAAKMSAASGNTNHIREGPESGQ*WRNFCC
Trigger: GCAGCAGAAATTTCTCCATCACTGTCCAGATTCTGG...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGATTGTCTTCTCAAGGCTaGCCACGACCCTACCACTGC +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRLSSQG*PRPYHC
Trigger: GCAGTGGTAGGGTCGTGGGCAGCCTTGAGAAGACAA...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATATTCCCCAGGACTGGCTaGTCCATGAATCCTCTGGGC +
Preference number: 4 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIFPRTG*SMNPLG
Trigger: GCCCAGAGGATTCATGGAGCAGCCAGTCCTGGGGAA...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCGTAGGCAAGGATGAGTaGGCAAGGCTGGAGGGGAAA +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSVGKDE*ARLEGK
Trigger: TTTCCCCTCCAGCCTTGCCCACTCATCCTTGCCTAC...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCCATTCCACATCATCTaGAAAATAGAGGGGAGTGCT +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVPFHII*KIEGSA
Trigger: AGCACTCCCCTCTATTTTCCAGATGATGTGGAATGG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCGCATCCCTCAAGGCCTaGAACAGGAGGAGCTTTGCA +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIASLKA*NRRSFA
Trigger: TGCAAAGCTCCTCCTGTTCCAGGCCTTGAGGGATGC...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGCTTGAGGTTGTTCATTaGGGCAGGCAGCTGATGGAT +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQLEVVH*GRQLMD
Trigger: ATCCATCAGCTGCCTGCCTCAATGAACAACCTCAAG...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCATAGTTAAACCAGCCTaGACATGCCAGGCAGGCCCA +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSIVKPA*TCQAGP
Trigger: TGGGCCTGCCTGGCATGTTCAGGCTGGTTTAACTAT...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGAAGGGTTGTATAAAATaGGACAAGGGAGGCAAAGCC +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRKGCIK*DKGGKA
Trigger: GGCTTTGCCTCCCTTGTCTCATTTTATACAACCCTT...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCGATGGAAACCAAGGCTaGGTGAGGGAAAGTCACCCA +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSDGNQG*VRESHP
Trigger: TGGGTGACTTTCCCTCACTCAGCCTTGGTTTCCATC...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAACAAACAGGGCAAGCTaGAAGCGAAGCAGCCAACGC +
Preference number: 4 (lower is better)
Translates to: ASGNTNHIREGVDVVSQITNRAS*KRSSQR
Trigger: GCGTTGGCTGCTTCGCTTGCAGCTTGCCCTGTTTGT...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR GCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGAGGTTGCTCACTGTGCTaGGCCAAATGTAGAGGGAGC +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGGCSLC*AKCRGS
Trigger: GCTCCCTCTACATTTGGCGCAGCACAGTGAGCAACC...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR GCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATATTTCCATCTTGGTCCTaGCCACTGTGGGGCCCAAGT +
Preference number: 4 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIFPSWS*PLWGPS
Trigger: ACTTGGGCCCCACAGTGGGCAGGACCAAGATGGAAA...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGTAGTGCAGGATGTCTaGTTCAATATCGTCCACCCC +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQVVQDV*FNIVHP
Trigger: GGGGTGGACGATATTGAAGCAGACATCCTGCACTAC...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGAGTTCAGGGAGACCGCTaGAGGATGAGCTCTGTGATC +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGVQGDR*RMSSVI
Trigger: GATCACAGAGCTCATCCTGCAGCGGTCTCCCTGAAC...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCACCCCTAGCAGTTGCTaGTTTGACACATCACCTGCC +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHITPSSC*FDTSPA
Trigger: GGCAGGTGATGTGTCAAAGCAGCAACTGCTAGGGGT...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAAACCCCCTTTGCCTaGCAGAATGCACATGAGGGA +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRETPFA*QNAHEG
Trigger: TCCCTCATGTGCATTCTGGCAGGCAAAGGGGGTTTC...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGTGTCAATACCGTGGCTaGCTGGGAACAAAAAGGGTG +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQCQYRG*LGTKRV
Trigger: CACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACA...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTTGGAGAAATTTCTGCTaGAAAAATGTCCGCCGCGTC +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSWRNFC*KNVRRV
Trigger: GACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCA...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCCAAACATTTCCATCTTaGTCCTGCCCACTGTGGGGC +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIQTFPS*SCPLWG
Trigger: GCCCCACAGTGGGCAGGACCAAGATGGAAATGTTTG...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAAGCAAGATGATTGTGTaGTCTGGGCTGCAGCCCTCC +
Preference number: 4 (lower is better)
Translates to: ASGNTNHIREGVDVVSQISKMIV*SGLQPS
Trigger: GGAGGGCTGCAGCCCAGACCACACAATCATCTTGCT...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGTTAAACTGCATGGTATaGCCCACTGTCAATACCGTG +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRLNCMV*PTVNTV
Trigger: CACGGTATTGACAGTGGGCCATACCATGCAGTTTAA...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGAAAGCTGAAAACAGGTTaGCTCTGCAGCTGGGGAGTG +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGKLKTG*LCSWGV
Trigger: CACTCCCCAGCTGCAGAGTCAACCTGTTTTCAGCTT...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR TCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGTTCACGTTCTCATTATaGAGAGGCTGGACATGCAGG +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQFTFSL*RGWTCR
Trigger: CCTGCATGTCCAGCCTCTTCATAATGAGAACGTGAA...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCTTTGAGTCAGGCTTGTaGCCAAGGGTGTGTAGGCAA +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIFESGL*PRVCRQ
Trigger: TTGCCTACACACCCTTGGTCACAAGCCTGACTCAAA...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCATAAGACCACACAATaGTGGCATTCAAGAGAAAGA +
Preference number: 4 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVHKTTQ*WHSRER
Trigger: TCTTTCTCTTGAATGCCATCATTGTGTGGTCTTATG...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGCATACGAGAGGGTGTTaGTGTTGTTTCTCAGATACA +
Preference number: 4 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRHTRGC*CCFSDT
Trigger: TGTATCTGAGAAACAACATCAACACCCTCTCGTATG...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCCCACCAGTTCTGTGCTaGTGGACTCTGGAAATGAGT +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSPPVLC*WTLEMS
Trigger: ACTCATTTCCAGAGTCCACCAGCACAGAACTGGTGG...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGACAGGCAGCTGATGGATaGGCACCTCCACAGTTTTCA +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGQAADG*APPQFS
Trigger: TGAAAACTGTGGAGGTGCCCATCCATCAGCTGCCTG...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGAGCACGCTGTGCCATGTaGAACTCATGCACAAGGCTT +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGARCAM*NSCTRL
Trigger: AAGCCTTGTGCATGAGTTCCACATGGCACAGCGTGC...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGATTCACGTTCTCATTATaGAGAGGCTGGACATGCAGG +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRFTFSL*RGWTCR
Trigger: CCTGCATGTCCAGCCTCTTCATAATGAGAACGTGAA...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGATAACACGTAACAGGTaGGTCAAACATTACCAGCCG +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQITRNR*VKHYQP
Trigger: CGGCTGGTAATGTTTGACTCACCTGTTACGTGTTAT...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCCCAGAATCTGGACAGTaGTGGAGAAATTTCTGCTGC +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIPESGQ*WRNFCC
Trigger: GCAGCAGAAATTTCTCCATCACTGTCCAGATTCTGG...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGACAGGGATTCCAGAAGTaGAAACCAGTTGCTGACATC +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRQGFQK*KPVADI
Trigger: GATGTCAGCAACTGGTTTGCACTTCTGGAATCCCTG...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAGTAGTGCAGGATGTCTaGTTCAATATCGTCCACCCC +
Preference number: 4 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIVVQDV*FNIVHP
Trigger: GGGGTGGACGATATTGAAGCAGACATCCTGCACTAC...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATACCAGTTCTGTGCTGGTaGACTCTGGAAATGAGTTCC +
Preference number: 4 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIPVLCW*TLEMSS
Trigger: GGAACTCATTTCCAGAGTCCACCAGCACAGAACTGG...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAGATCAGGTTAATATCTaGCCGAGCCTGGAGAGCTCT +
Preference number: 4 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIDQVNI*PSLESS
Trigger: AGAGCTCTCCAGGCTCGGCCAGATATTAACCTGATC...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGATTCTCCCAAATTACCTaGCAACACTACCCCTTCCCC +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGFSQIT*QHYPFP
Trigger: GGGGAAGGGGTAGTGTTGCCAGGTAATTTGGGAGAA...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGACCACTGTCAATACCGTaGCTGCCTGGGAACAAAAAG +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGPLSIP*LPGNKK
Trigger: CTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTGG...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAAAGGGTTGTATAAAATaGGACAAGGGAGGCAAAGCC +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRKGCIK*DKGGKA
Trigger: GGCTTTGCCTCCCTTGTCTCATTTTATACAACCCTT...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGTTGATGGATCCCTCCTaGCAAAACAATCTTGAGGTA +
Preference number: 4 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQLMDPS*QNNLEV
Trigger: TACCTCAAGATTGTTTTGTCAGGAGGGATCCATCAA...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCATAACACGTAACAGGTaGGTCAAACATTACCAGCCG +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIITRNR*VKHYQP
Trigger: CGGCTGGTAATGTTTGACTCACCTGTTACGTGTTAT...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp TCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGCAGGATCAATTTATTaGGATTTTGTGACAGCATCA +
Preference number: 4 (lower is better)
Translates to: SAAKMSAASGNTNHIREGAGSIY*DFVTAS
Trigger: TGATGCTGTCACAAAATCTCAATAAATTGATCCTGC...ACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTAGATACATTTTAAACTaGATGGTATGGCCCACTGTC +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSRYILN*MVWPTV
Trigger: GACAGTGGGCCATACCATGCAGTTTAAAATGTATCT...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAAATCACCGTGATGTCTaGTTCCAGCACATTCACCAT +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRNHRDV*FQHIHH
Trigger: ATGGTGAATGTGCTGGAACCAGACATCACGGTGATT...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAACCAGGGCCAGAATCTaGACAGTGATGGAGAAATTT +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRTRARI*TVMEKF
Trigger: AAATTTCTCCATCACTGTCCAGATTCTGGCCCTGGT...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CAA 72 bp TCTTGTCATACTGCCTGTGCCCTATCTCTCTTTGCCTaGGTTTCCTTATCTCCAAATAGGGAAAAGCAGCCT +
Preference number: 4 (lower is better)
Translates to: SCHTACALSLFA*VSLSPNREKQP
Trigger: AGGCTGCTTTTCCCTATTTGGAGATAAGGAAACCAAGGCAAAGAGAGATAGGGCACAGGCAGTATGACAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CAA 72 bp AAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCTaGTCATACTGCCTGTGCCCTATCTCTCTTTGCCTT +
Preference number: 4 (lower is better)
Translates to: KTWFLAPNLLHI*SYCLCPISLCL
Trigger: AAGGCAAAGAGAGATAGGGCACAGGCAGTATGACAAGATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCAAGGCTCTGGATCAATaGTTCTGGAAACCACTTAAG +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIKALDQ*FWKPLK
Trigger: CTTAAGTGGTTTCCAGAATCATTGATCCAGAGCCTT...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGAAATCACCGTGATGTCTaGTTCCAGCACATTCACCAT +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGNHRDV*FQHIHH
Trigger: ATGGTGAATGTGCTGGAACCAGACATCACGGTGATT...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAAGGATCTATTGCTTCTaGCAAAAGGGCAAAAGCACC +
Preference number: 4 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIRIYCF*QKGKST
Trigger: GGTGCTTTTGCCCTTTTGCCAGAAGCAATAGATCCT...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCTTAGCAAGCTCCACTaGAACGTTGAAAAATTAACA +
Preference number: 4 (lower is better)
Translates to: SAASGNTNHIREGVDVVSLSKLH*NVEKLT
Trigger: TGTTAATTTTTCAACGTTCCAGTGGAGCTTGCTAAG...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGATTAAACTGCATGGTATaGCCCACTGTCAATACCGTG +
Preference number: 4 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGLNCMV*PTVNTV
Trigger: CACGGTATTGACAGTGGGCCATACCATGCAGTTTAA...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
3UTR CAA 72 bp CTTAGCAAGCTCCACTGGAACGTTGAAAAATTAACATaGAGTGTTTACTGTGCACGCTGTGCCATGTGGAAC +
Preference number: 4 (lower is better)
Translates to: LSKLHWNVEKLT*SVYCARCAMWN
Trigger: GTTCCACATGGCACAGCGTGCACAGTAAACACTCAATGTTAATTTTTCAACGTTCCAGTGGAGCTTGCTAAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCGCTCCACTGGAACGTTaGAAAATTAACATTGAGTGT +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIAPLER*KINIEC
Trigger: ACACTCAATGTTAATTTTTCAACGTTCCAGTGGAGC...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGCTCCACTGGAACGTTaGAAAATTAACATTGAGTGT +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRAPLER*KINIEC
Trigger: ACACTCAATGTTAATTTTTCAACGTTCCAGTGGAGC...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCGATCAAAGGATCTATTaGTTCTGGCAAAAGGGCAAA +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIDQRIY*FWQKGK
Trigger: TTTGCCCTTTTGCCAGAAGCAATAGATCCTTTGATC...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR GCA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCAGATACATTTTAAACTaGATGGTATGGCCCACTGTC +
Preference number: 4 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSRYILN*MVWPTV
Trigger: GACAGTGGGCCATACCATGCAGTTTAAAATGTATCT...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR TCA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGCAGGATCAATTTATTaGGATTTTGTGACAGCATCA +
Preference number: 4 (lower is better)
Translates to: EISAAKMSAASGNTNHIRAGSIY*DFVTAS
Trigger: TGATGCTGTCACAAAATCTCAATAAATTGATCCTGC...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CCA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCCTTAGCAAGCTCCACTaGAACGTTGAAAAATTAACA +
Preference number: 4 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHILSKLH*NVEKLT
Trigger: TGTTAATTTTTCAACGTTCCAGTGGAGCTTGCTAAG...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGGCCACCACCACCACGTaGGGCCCGTGTGGCGGAAAT +
Preference number: 5 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQATTTT*GPCGGN
Trigger: ATTTCCGCCACACGGGCCCAACGTGGTGGTGGTGGC...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 90 bp AAGCTGGCCCAGAGGAGCGACAGCCGTCCGCAGGACCGAGGCTTCTaGGTCGGAGAGGTCACCCACAATCACCGTGATGTCTGGTTCCAG +
Preference number: 5 (lower is better)
Translates to: KLAQRSDSRPQDRGF*VGEVTHNHRDVWFQ
Trigger: CTGGAACCAGACATCACGGTGATTGTGGGTGACCTCTCCGACTCAGAAGCCTCGGTCCTGCGGACGGCTGTCGCTCCTCTGGGCCAGCTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS CCA 90 bp CTGCTCCATGCCGCTCGTCTCAACACCTCGTTACAGATGGGGAAGTaGATCCAAGCGCAAAGGGCGGCCGGAGCGGAACGCACAAGCGAC +
Preference number: 5 (lower is better)
Translates to: LLHAARLNTSLQMGK*IQAQRAAGAERTSD
Trigger: GTCGCTTGTGCGTTCCGCTCCGGCCGCCCTTTGCGCTTGGATCCACTTCCCCATCTGTAACGAGGTGTTGAGACGAGCGGCATGGAGCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416695.6
CDS-3UTR CAA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGCAGCCCTCCAGGGCCTaGTCAAGATCCATGCCATGG +
Preference number: 5 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQQPSRA*SRSMPW
Trigger: CCATGGCATGGATCTTGACAAGGCCCTGGAGGGCTG...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 90 bp ATATCTGGCCGAGCCTGGAGAGCTCTCTTGGCAGCCAGGGGCTGGTaGGCTAGCAAGATGATTGTGTGGTCTGGGCTGCAGCCCTCCAGG +
Preference number: 5 (lower is better)
Translates to: ISGRAWRALLAARGW*ASKMIVWSGLQPSR
Trigger: CCTGGAGGGCTGCAGCCCAGACCACACAATCATCTTGCTAGCTCACCAGCCCCTGGCTGCCAAGAGAGCTCTCCAGGCTCGGCCAGATAT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS CCA 90 bp AGGTCAACTCCGCCTCGTCTCAACACCTCGTTACAGATGGGGAAGTaGATCCAAGCGCAAAGGGCGGCCGGAGCGGAACGCACAAGCGAC +
Preference number: 5 (lower is better)
Translates to: RSTPPRLNTSLQMGK*IQAQRAAGAERTSD
Trigger: GTCGCTTGTGCGTTCCGCTCCGGCCGCCCTTTGCGCTTGGATCCACTTCCCCATCTGTAACGAGGTGTTGAGACGAGGCGGAGTTGACCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS GCA 90 bp AAGACAGTGACAGCAGCCAGGGTGGCCTTCGCGCCTAGGGACAGCTaGCTGAAGATGGCCATTTTCTCTGCTCCTAGTAGGCTCCCCCAC +
Preference number: 5 (lower is better)
Translates to: KTVTAARVAFAPRDS*LKMAIFSAPSRLPH
Trigger: GTGGGGGAGCCTACTAGGAGCAGAGAAAATGGCCATCTTCAGGCAGCTGTCCCTAGGCGCGAAGGCCACCCTGGCTGCTGTCACTGTCTT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS CCA 90 bp AGGTTTCCAGGTCAACTCCGCCTCGTCTCAACACCTCGTTACAGATaGGGAAGTGGATCCAAGCGCAAAGGGCGGCCGGAGCGGAACGCA +
Preference number: 5 (lower is better)
Translates to: RFPGQLRLVSTPRYR*GSGSKRKGRPERNA
Trigger: TGCGTTCCGCTCCGGCCGCCCTTTGCGCTTGGATCCACTTCCCCATCTGTAACGAGGTGTTGAGACGAGGCGGAGTTGACCTGGAAACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CAA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCGGGGAGTGGCAGAGGTaGCTCACTGTGCTGCGCCAA +
Preference number: 5 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTGEWQR*LTVLRQ
Trigger: TTGGCGCAGCACAGTGAGCAACCTCTGCCACTCCCC...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS TCA 90 bp TCTGAGAGGAGCACGATCTTGAGGTTGTTCATTGAGGCAGGCAGCTaGTGGATGGGCACCTCCACAGTTTTCACAGCCGGGGGCTGCGCG +
Preference number: 5 (lower is better)
Translates to: SERSTILRLFIEAGS*WMGTSTVFTAGGCA
Trigger: CGCGCAGCCCCCGGCTGTGAAAACTGTGGAGGTGCCCATCCATCAGCTGCCTGCCTCAATGAACAACCTCAAGATCGTGCTCCTCTCAGA
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS CCA 90 bp GATCTGCCCAGCATGTGTGTGCCCAGAAAGGATCAGGTTAATATCTaGCCGAGCCTGGAGAGCTCTCTTGGCAGCCAGGGGCTGGTGAGC +
Preference number: 5 (lower is better)
Translates to: DLPSMCVPRKDQVNI*PSLESSLGSQGLVS
Trigger: GCTCACCAGCCCCTGGCTGCCAAGAGAGCTCTCCAGGCTCGGCCAGATATTAACCTGATCCTTTCTGGGCACACACATGCTGGGCAGATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGAGCACGATCTTGAGGTaGTTCATTGAGGCAGGCAGC +
Preference number: 5 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQSTILR*FIEAGS
Trigger: GCTGCCTGCCTCAATGAACAACCTCAAGATCGTGCT...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 90 bp CGTGTAGTACTCATGATTGCCTGTGACGAAGTAGGCACCGAGATGTaGATGAAGCTGGCCCAGAGGAGCGACAGCCGTCCGCAGGACCGA +
Preference number: 5 (lower is better)
Translates to: RVVLMIACDEVGTEM*MKLAQRSDSRPQDR
Trigger: TCGGTCCTGCGGACGGCTGTCGCTCCTCTGGGCCAGCTTCATTCACATCTCGGTGCCTACTTCGTCACAGGCAATCATGAGTACTACACG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGGAGAGGAGCACGATCTaGAGGTTGTTCATTGAGGCA +
Preference number: 5 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQERSTI*RLFIEA
Trigger: TGCCTCAATGAACAACCTCAAGATCGTGCTCCTCTC...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 90 bp GGCCAGAAATGCCAGAACCACCACCTTCCAAAGCTGAAAACAGGTTaGCTCTGCAGCTGGGGAGTGGCAGAGGTTGCTCACTGTGCTGCG +
Preference number: 5 (lower is better)
Translates to: GQKCQNHHLPKLKTG*LCSWGVAEVAHCAA
Trigger: CGCAGCACAGTGAGCAACCTCTGCCACTCCCCAGCTGCAGAGTCAACCTGTTTTCAGCTTTGGAAGGTGGTGGTTCTGGCATTTCTGGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CAA 90 bp CACTGTCAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCCTAGCAGTTGCTGCTTaGACACATCACCTGCCCCAG +
Preference number: 5 (lower is better)
Translates to: HCQYRGCLGTKRVVSRSPLAVAA*THHLPQ
Trigger: CTGGGGCAGGTGATGTGTCAAAGCAGCAACTGCTAG...GGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTGACAGTG
57% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS GCA 90 bp GGCCACCTGGTAGAGACCAGCAAAGAAGGGATTCAGGAGATAGGCTaGTACGTTCAAGGGGAAGATCTGCCCAGCATGTGTGTGCCCAGA +
Preference number: 5 (lower is better)
Translates to: GHLVETSKEGIQEIG*YVQGEDLPSMCVPR
Trigger: TCTGGGCACACACATGCTGGGCAGATCTTCCCCTTGAACGTAGCAGCCTATCTCCTGAATCCCTTCTTTGCTGGTCTCTACCAGGTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCATGAGCAAGAGCGAGTaGACAAACAGGGCAAGCTGC +
Preference number: 5 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTMSKSE*TNRASC
Trigger: GCAGCTTGCCCTGTTTGTCAACTCGCTCTTGCTCAT...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CAA 90 bp GACACATCACCTGCCCCAGCAGCAGGCAGCTCGCTACCCACTCACATTCCCCAGGGATCAAAGGATCTATaGCTTCTGGCAAAAGGGCAA +
Preference number: 5 (lower is better)
Translates to: DTSPAPAAGSSLPTHIPQGSKDL*LLAKGQ
Trigger: TTGCCCTTTTGCCAGAAGCAATAGATCCTTTGATCC...CTGGGGAATGTGAGTGGGTAGCGAGCTGCCTGCTGCTGGGGCAGGTGATGTGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGAGGAAGAAACCCCCTTaGCCTGCCAGAATGCACATG +
Preference number: 5 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRRKKPP*PARMHM
Trigger: CATGTGCATTCTGGCAGGCAAAGGGGGTTTCTTCCT...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS GCA 90 bp GGCCTTGTCAAGATCCATGCCATGGCCAGAGTAGTGCAGGATGTCTaGTTCAATATCGTCCACCCCAGCCAAGCAGATCCAGTCCTCATC +
Preference number: 5 (lower is better)
Translates to: GLVKIHAMARVVQDV*FNIVHPSQADPVLI
Trigger: GATGAGGACTGGATCTGCTTGGCTGGGGTGGACGATATTGAAGCAGACATCCTGCACTACTCTGGCCATGGCATGGATCTTGACAAGGCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 90 bp GCAGGACCGAGGCTTCTGAGTCGGAGAGGTCACCCACAATCACCGTaGTGTCTGGTTCCAGCACATTCACCATCCTCACAAACATTTCCA +
Preference number: 5 (lower is better)
Translates to: AGPRLLSRRGHPQSP*CLVPAHSPSSQTFP
Trigger: TGGAAATGTTTGTGAGGATGGTGAATGTGCTGGAACCAGACATCACGGTGATTGTGGGTGACCTCTCCGACTCAGAAGCCTCGGTCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAGCCACCACCACCACGTaGGGCCCGTGTGGCGGAAAT +
Preference number: 5 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIATTTT*GPCGGN
Trigger: ATTTCCGCCACACGGGCCCAACGTGGTGGTGGTGGC...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGGAACAGGAGGAGCTTaGCATTCCAGTAGATTTTGC +
Preference number: 5 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRGTGGA*HSSRFC
Trigger: GCAAAATCTACTGGAATGCAAAGCTCCTCCTGTTCC...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGGTGCTTATCTCCATCTCAGGCTAGCAGTTGCTGCTTaGACACATCACCTGCCCCAG +
Preference number: 5 (lower is better)
Translates to: PCLLSEAFSNTGAYLHLRLAVAA*THHLPQ
Trigger: CTGGGGCAGGTGATGTGTCAAAGCAGCAACTGCTAG...CCTGAGATGGAGATAAGCACCCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS GCA 90 bp GTTCCAGCACATTCACCATCCTCACAAACATTTCCATCTTGGTCCTaGCCACTGTGGGGCCCAAGTGAATGTCTGAGAGGAGCACGATCT +
Preference number: 5 (lower is better)
Translates to: VPAHSPSSQTFPSWS*PLWGPSECLRGARS
Trigger: AGATCGTGCTCCTCTCAGACATTCACTTGGGCCCCACAGTGGGCAGGACCAAGATGGAAATGTTTGTGAGGATGGTGAATGTGCTGGAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCCAGCCCTCCAGGGCCTaGTCAAGATCCATGCCATGG +
Preference number: 5 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIQPSRA*SRSMPW
Trigger: CCATGGCATGGATCTTGACAAGGCCCTGGAGGGCTG...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACAACCATAAGTCACTGTTaGAGTCAGGCTTGTGACCAA +
Preference number: 5 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTTISHC*SQACDQ
Trigger: TTGGTCACAAGCCTGACTCAAACAGTGACTTATGGT...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CAATACCGTGGCTGCCTGGGAACAAAAAGGGTGGTCTCCAGATCCCCCAGAACCACCATAAGTCACTGTTaGAGTCAGGCTTGTGACCAA +
Preference number: 5 (lower is better)
Translates to: QYRGCLGTKRVVSRSPRTTISHC*SQACDQ
Trigger: TTGGTCACAAGCCTGACTCAAACAGTGACTTATGGT...GGTTCTGGGGGATCTGGAGACCACCCTTTTTGTTCCCAGGCAGCCACGGTATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACAGGATCAAAGGATCTATaGCTTCTGGCAAAAGGGCAA +
Preference number: 5 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTGSKDL*LLAKGQ
Trigger: TTGCCCTTTTGCCAGAAGCAATAGATCCTTTGATCC...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 90 bp CTCACAAACATTTCCATCTTGGTCCTGCCCACTGTGGGGCCCAAGTaGATGTCTGAGAGGAGCACGATCTTGAGGTTGTTCATTGAGGCA +
Preference number: 5 (lower is better)
Translates to: LTNISILVLPTVGPK*MSERSTILRLFIEA
Trigger: TGCCTCAATGAACAACCTCAAGATCGTGCTCCTCTCAGACATTCACTTGGGCCCCACAGTGGGCAGGACCAAGATGGAAATGTTTGTGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 90 bp CTGGACATGCAGGGATTCCAGAAGTGCAAACCAGTTGCTGACATCTaGCGTGTAGTACTCATGATTGCCTGTGACGAAGTAGGCACCGAG +
Preference number: 5 (lower is better)
Translates to: LDMQGFQKCKPVADI*RVVLMIACDEVGTE
Trigger: CTCGGTGCCTACTTCGTCACAGGCAATCATGAGTACTACACGTCAGATGTCAGCAACTGGTTTGCACTTCTGGAATCCCTGCATGTCCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGACAAACATTTCCATCTaGGTCCTGCCCACTGTGGGG +
Preference number: 5 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQTNISI*VLPTVG
Trigger: CCCCACAGTGGGCAGGACCAAGATGGAAATGTTTGT...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CCAGCAGGAAACCAGCCCAGCCCTGTCTTCTCAGTGAGGCCTTTTCTAACACGGCTATCTCTCTTTGCCTaGGTTTCCTTATCTCCAAAT +
Preference number: 5 (lower is better)
Translates to: PAGNQPSPVFSVRPFLTRLSLFA*VSLSPN
Trigger: ATTTGGAGATAAGGAAACCAAGGCAAAGAGAGATAG...CCGTGTTAGAAAAGGCCTCACTGAGAAGACAGGGCTGGGCTGGTTTCCTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CTGGAGGGGAAAAGCAGGCAAACCACTCTGAAGCAGGATGGAGGGTCGAGGACACTATCTCTCTTTGCCTaGGTTTCCTTATCTCCAAAT +
Preference number: 5 (lower is better)
Translates to: LEGKSRQTTLKQDGGSRTLSLFA*VSLSPN
Trigger: ATTTGGAGATAAGGAAACCAAGGCAAAGAGAGATAG...TGTCCTCGACCCTCCATCCTGCTTCAGAGTGGTTTGCCTGCTTTTCCCCTCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCAGCACGATCTTGAGGTaGTTCATTGAGGCAGGCAGC +
Preference number: 5 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHISTILR*FIEAGS
Trigger: GCTGCCTGCCTCAATGAACAACCTCAAGATCGTGCT...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTGGAACAGGAGGAGCTTaGCATTCCAGTAGATTTTGC +
Preference number: 5 (lower is better)
Translates to: SAASGNTNHIREGVDVVSGTGGA*HSSRFC
Trigger: GCAAAATCTACTGGAATGCAAAGCTCCTCCTGTTCC...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp AGTCAAACATTACCAGCCGCATCAAACAGTGGAAGTGAAATGGCACCATCTAGCAGGAAGAAACCCCCTTaGCCTGCCAGAATGCACATG +
Preference number: 5 (lower is better)
Translates to: SQTLPAASNSGSEMAPSSRKKPP*PARMHM
Trigger: CATGTGCATTCTGGCAGGCAAAGGGGGTTTCTTCCT...GCTAGATGGTGCCATTTCACTTCCACTGTTTGATGCGGCTGGTAATGTTTGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGACATACGAGAGGGTGTaGATGTTGTTTCTCAGATAC +
Preference number: 5 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVTYERV*MLFLRY
Trigger: GTATCTGAGAAACAACATCAACACCCTCTCGTATGT...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAAAAGCTGAAAACAGGTaGACTCTGCAGCTGGGGAGT +
Preference number: 5 (lower is better)
Translates to: EISAAKMSAASGNTNHIRKAENR*TLQLGS
Trigger: ACTCCCCAGCTGCAGAGTCAACCTGTTTTCAGCTTT...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS-3UTR CAA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGAACAAACATTTCCATCTaGGTCCTGCCCACTGTGGGG +
Preference number: 5 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGTNISI*VLPTVG
Trigger: CCCCACAGTGGGCAGGACCAAGATGGAAATGTTTGT...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAGAGAGGAGCACGATCTaGAGGTTGTTCATTGAGGCA +
Preference number: 5 (lower is better)
Translates to: ASGNTNHIREGVDVVSQIERSTI*RLFIEA
Trigger: TGCCTCAATGAACAACCTCAAGATCGTGCTCCTCTC...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp CTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGGTTGAAAAATTAACATaGAGTGTTTACTGTGCACGC +
Preference number: 5 (lower is better)
Translates to: LLQKCPPRQGIQTTYERVVEKLT*SVYCAR
Trigger: GCGTGCACAGTAAACACTCAATGTTAATTTTTCAAC...CACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GCTTTTACTGGGAGGTACAAGACCTGGTTTCTAGCCCCAAATCTCCTACATATCGAGAGGGTGTTGATGTaGTTTCTCAGATACATAGGA +
Preference number: 5 (lower is better)
Translates to: AFTGRYKTWFLAPNLLHIERVLM*FLRYIG
Trigger: TCCTATGTATCTGAGAAACAACATCAACACCCTCTC...GATATGTAGGAGATTTGGGGCTAGAAACCAGGTCTTGTACCTCCCAGTAAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGGAATACAAACCACATACGAACATACGAGAGGGTGTaGATGTTGTTTCTCAGATAC +
Preference number: 5 (lower is better)
Translates to: EISAAKMSAASGNTNHIRTYERV*MLFLRY
Trigger: GTATCTGAGAAACAACATCAACACCCTCTCGTATGT...TCGTATGTGGTTTGTATTCCCTGACGCGGCGGACATTTTTGCAGCAGAAATTTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp TCCGCCGCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTAGCAGGATCAATTTATaGAGATTTTGTGACAGCATC +
Preference number: 5 (lower is better)
Translates to: SAASGNTNHIREGVDVVSSRINL*RFCDSI
Trigger: GATGCTGTCACAAAATCTCAATAAATTGATCCTGCT...AGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGCGGCGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp AGAATCTGGACAGTGATGGAGAAATTTCTGCTGCAAAAATGTCCGCCGCGTCAGGTTGAAAAATTAACATaGAGTGTTTACTGTGCACGC +
Preference number: 5 (lower is better)
Translates to: RIWTVMEKFLLQKCPPRQVEKLT*SVYCAR
Trigger: GCGTGCACAGTAAACACTCAATGTTAATTTTTCAAC...CTGACGCGGCGGACATTTTTGCAGCAGAAATTTCTCCATCACTGTCCAGATTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp ATCCAAAGCGAGAACTTAAAGGGAGTAAGGATGATTCACAAAATGCGGTCGGGAGAGAGGGTGTTGATGTaGTTTCTCAGATACATAGGA +
Preference number: 5 (lower is better)
Translates to: IQSENLKGVRMIHKMRSGERVLM*FLRYIG
Trigger: TCCTATGTATCTGAGAAACAACATCAACACCCTCTC...TCCCGACCGCATTTTGTGAATCATCCTTACTCCCTTTAAGTTCTCGCTTTGGAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS-3UTR CAA 90 bp GCGTCAGGGAATACAAACCACATACGAGAGGGTGTTGATGTTGTTTCTCAGATAAGCAGGATCAATTTATaGAGATTTTGTGACAGCATC +
Preference number: 5 (lower is better)
Translates to: ASGNTNHIREGVDVVSQISRINL*RFCDSI
Trigger: GATGCTGTCACAAAATCTCAATAAATTGATCCTGCT...TATCTGAGAAACAACATCAACACCCTCTCGTATGTGGTTTGTATTCCCTGACGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 72 bp CCGGGGGCTGCGCGGCATTCAGAATCCCGGCCACGCTaGGCACAGCAGTCACTCCCACTGCCAGGGCAGGCC +
Preference number: 6 (lower is better)
Translates to: PGAARHSESRPR*AQQSLPLPGQA
Trigger: GGCCTGCCCTGGCAGTGGGAGTGACTGCTGTGCTCAGCGTGGCCGGGATTCTGAATGCCGCGCAGCCCCCGG
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 72 bp GCAACAGAGGGAGGATGCGAACCAGGAACCCCGGCATaGCCACCAGCCTCCCGGCTCTGCAGTCGGCGCCCA +
Preference number: 6 (lower is better)
Translates to: ATEGGCEPGTPA*PPASRLCSRRP
Trigger: TGGGCGCCGACTGCAGAGCCGGGAGGCTGGTGGTCATGCCGGGGTTCCTGGTTCGCATCCTCCCTCTGTTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS GCA 72 bp GAGGTGCACAGGGCAGGGCCAGTTCAGGGAGACCGCTaGAGGATGAGCTCTGTGATCTCGGCCCTGCTACCC +
Preference number: 6 (lower is better)
Translates to: EVHRAGPVQGDR*RMSSVISALLP
Trigger: GGGTAGCAGGGCCGAGATCACAGAGCTCATCCTGCAGCGGTCTCCCTGAACTGGCCCTGCCCTGTGCACCTC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS GCA 72 bp TGGATGGGCACCTCCACAGTTTTCACAGCCGGGGGCTaGGCGGCATTCAGAATCCCGGCCACGCTGAGCACA +
Preference number: 6 (lower is better)
Translates to: WMGTSTVFTAGG*AAFRIPATLST
Trigger: TGTGCTCAGCGTGGCCGGGATTCTGAATGCCGCGCAGCCCCCGGCTGTGAAAACTGTGGAGGTGCCCATCCA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS CCA 72 bp CCGCCTCGTCTCAACACCTCGTTACAGATGGGGAAGTaGATCCAAGCGCAAAGGGCGGCCGGAGCGGAACGC +
Preference number: 6 (lower is better)
Translates to: PPRLNTSLQMGK*IQAQRAAGAER
Trigger: GCGTTCCGCTCCGGCCGCCCTTTGCGCTTGGATCCACTTCCCCATCTGTAACGAGGTGTTGAGACGAGGCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS CCA 72 bp GCCGCTCGTCTCAACACCTCGTTACAGATGGGGAAGTaGATCCAAGCGCAAAGGGCGGCCGGAGCGGAACGC +
Preference number: 6 (lower is better)
Translates to: AARLNTSLQMGK*IQAQRAAGAER
Trigger: GCGTTCCGCTCCGGCCGCCCTTTGCGCTTGGATCCACTTCCCCATCTGTAACGAGGTGTTGAGACGAGCGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000416695.6
CDS TCA 72 bp GATACGAGCGGGAGGCGATCATGGACACGAAGACAGTaGCAGCAGCCAGGGTGGCCTTCGCGCCTAGGGACA +
Preference number: 6 (lower is better)
Translates to: DTSGRRSWTRRQ*QQPGWPSRLGT
Trigger: TGTCCCTAGGCGCGAAGGCCACCCTGGCTGCTGTCACTGTCTTCGTGTCCATGATCGCCTCCCGCTCGTATC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS TCA 72 bp CAGAGGAGCGACAGCCGTCCGCAGGACCGAGGCTTCTaGGTCGGAGAGGTCACCCACAATCACCGTGATGTC +
Preference number: 6 (lower is better)
Translates to: QRSDSRPQDRGF*VGEVTHNHRDV
Trigger: GACATCACGGTGATTGTGGGTGACCTCTCCGACTCAGAAGCCTCGGTCCTGCGGACGGCTGTCGCTCCTCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 72 bp CTCTCTTGGCAGCCAGGGGCTGGTGAGCTAGCAAGATaGTTGTGTGGTCTGGGCTGCAGCCCTCCAGGGCCT +
Preference number: 6 (lower is better)
Translates to: LSWQPGAGELAR*LCGLGCSPPGP
Trigger: AGGCCCTGGAGGGCTGCAGCCCAGACCACACAATCATCTTGCTAGCTCACCAGCCCCTGGCTGCCAAGAGAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS GCA 72 bp TCCTTGTCTTCTCAAGGCTGCCCACGACCCTACCACTaGGCCAGGCCAAGAGCTGGTAGGCCTGCTCCATGC +
Preference number: 6 (lower is better)
Translates to: SLSSQGCPRPYH*ARPRAGRPAPC
Trigger: GCATGGAGCAGGCCTACCAGCTCTTGGCCTGGCGCAGTGGTAGGGTCGTGGGCAGCCTTGAGAAGACAAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS GCA 72 bp AATCCCGGCCACGCTGAGCACAGCAGTCACTCCCACTaGCAGGGCAGGCCTGAGCACGAGCTTCCTTGTCTT +
Preference number: 6 (lower is better)
Translates to: NPGHAEHSSHSH*QGRPEHELPCL
Trigger: AAGACAAGGAAGCTCGTGCTCAGGCCTGCCCTGGCAGTGGGAGTGACTGCTGTGCTCAGCGTGGCCGGGATT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS CCA 72 bp GGTCAACTCCGCCTCGTCTCAACACCTCGTTACAGATaGGGAAGTGGATCCAAGCGCAAAGGGCGGCCGGAG +
Preference number: 6 (lower is better)
Translates to: GQLRLVSTPRYR*GSGSKRKGRPE
Trigger: CTCCGGCCGCCCTTTGCGCTTGGATCCACTTCCCCATCTGTAACGAGGTGTTGAGACGAGGCGGAGTTGACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS CCA 72 bp TGCTCCATGCCGCTCGTCTCAACACCTCGTTACAGATaGGGAAGTGGATCCAAGCGCAAAGGGCGGCCGGAG +
Preference number: 6 (lower is better)
Translates to: CSMPLVSTPRYR*GSGSKRKGRPE
Trigger: CTCCGGCCGCCCTTTGCGCTTGGATCCACTTCCCCATCTGTAACGAGGTGTTGAGACGAGCGGCATGGAGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000416695.6
CDS GCA 72 bp ACAGCAGCCAGGGTGGCCTTCGCGCCTAGGGACAGCTaGCTGAAGATGGCCATTTTCTCTGCTCCTAGTAGG +
Preference number: 6 (lower is better)
Translates to: TAARVAFAPRDS*LKMAIFSAPSR
Trigger: CCTACTAGGAGCAGAGAAAATGGCCATCTTCAGGCAGCTGTCCCTAGGCGCGAAGGCCACCCTGGCTGCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS TCA 72 bp CTCATGATTGCCTGTGACGAAGTAGGCACCGAGATGTaGATGAAGCTGGCCCAGAGGAGCGACAGCCGTCCG +
Preference number: 6 (lower is better)
Translates to: LMIACDEVGTEM*MKLAQRSDSRP
Trigger: CGGACGGCTGTCGCTCCTCTGGGCCAGCTTCATTCACATCTCGGTGCCTACTTCGTCACAGGCAATCATGAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS CAA 90 bp GGGCCAGAAATGCCAGAACCACCACCTTCCAAAGCTGAAAACAGGTaGACTCTGCAGCTGGGGAGTGGCAGAGGTTGCTCACTGTGCTGC +
Preference number: 6 (lower is better)
Translates to: GPEMPEPPPSKAENR*TLQLGSGRGCSLCC
Trigger: GCAGCACAGTGAGCAACCTCTGCCACTCCCCAGCTGCAGAGTCAACCTGTTTTCAGCTTTGGAAGGTGGTGGTTCTGGCATTTCTGGCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS CCA 72 bp CACTGCCACTGCCACCACCACCACGTTGGGCCCGTGTaGCGGAAATCTTCACGTTCTCATTATGAAGAGGCT +
Preference number: 6 (lower is better)
Translates to: HCHCHHHHVGPV*RKSSRSHYEEA
Trigger: AGCCTCTTCATAATGAGAACGTGAAGATTTCCGCCACACGGGCCCAACGTGGTGGTGGTGGCAGTGGCAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS CCA 72 bp AGCATGTGTGTGCCCAGAAAGGATCAGGTTAATATCTaGCCGAGCCTGGAGAGCTCTCTTGGCAGCCAGGGG +
Preference number: 6 (lower is better)
Translates to: SMCVPRKDQVNI*PSLESSLGSQG
Trigger: CCCCTGGCTGCCAAGAGAGCTCTCCAGGCTCGGCCAGATATTAACCTGATCCTTTCTGGGCACACACATGCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 72 bp TGCCAGAACCACCACCTTCCAAAGCTGAAAACAGGTTaGCTCTGCAGCTGGGGAGTGGCAGAGGTTGCTCAC +
Preference number: 6 (lower is better)
Translates to: CQNHHLPKLKTG*LCSWGVAEVAH
Trigger: GTGAGCAACCTCTGCCACTCCCCAGCTGCAGAGTCAACCTGTTTTCAGCTTTGGAAGGTGGTGGTTCTGGCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS TCA 72 bp AGCACGATCTTGAGGTTGTTCATTGAGGCAGGCAGCTaGTGGATGGGCACCTCCACAGTTTTCACAGCCGGG +
Preference number: 6 (lower is better)
Translates to: STILRLFIEAGS*WMGTSTVFTAG
Trigger: CCCGGCTGTGAAAACTGTGGAGGTGCCCATCCATCAGCTGCCTGCCTCAATGAACAACCTCAAGATCGTGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 72 bp TGGGGCCCAAGTGAATGTCTGAGAGGAGCACGATCTTaGGGTTGTTCATTGAGGCAGGCAGCTGATGGATGG +
Preference number: 6 (lower is better)
Translates to: WGPSECLRGARS*GCSLRQAADGW
Trigger: CCATCCATCAGCTGCCTGCCTCAATGAACAACCTCAAGATCGTGCTCCTCTCAGACATTCACTTGGGCCCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS CAA 72 bp ATGCCAGAACCACCACCTTCCAAAGCTGAAAACAGGTaGACTCTGCAGCTGGGGAGTGGCAGAGGTTGCTCA +
Preference number: 6 (lower is better)
Translates to: MPEPPPSKAENR*TLQLGSGRGCS
Trigger: TGAGCAACCTCTGCCACTCCCCAGCTGCAGAGTCAACCTGTTTTCAGCTTTGGAAGGTGGTGGTTCTGGCAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000342462.5
CDS TCA 72 bp ATTTCCATCTTGGTCCTGCCCACTGTGGGGCCCAAGTaGATGTCTGAGAGGAGCACGATCTTGAGGTTGTTC +
Preference number: 6 (lower is better)
Translates to: ISILVLPTVGPK*MSERSTILRLF
Trigger: GAACAACCTCAAGATCGTGCTCCTCTCAGACATTCACTTGGGCCCCACAGTGGGCAGGACCAAGATGGAAAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 72 bp AGGCTTCTGAGTCGGAGAGGTCACCCACAATCACCGTaGTGTCTGGTTCCAGCACATTCACCATCCTCACAA +
Preference number: 6 (lower is better)
Translates to: RLLSRRGHPQSP*CLVPAHSPSSQ
Trigger: TTGTGAGGATGGTGAATGTGCTGGAACCAGACATCACGGTGATTGTGGGTGACCTCTCCGACTCAGAAGCCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS GCA 72 bp AAGATCCATGCCATGGCCAGAGTAGTGCAGGATGTCTaGTTCAATATCGTCCACCCCAGCCAAGCAGATCCA +
Preference number: 6 (lower is better)
Translates to: KIHAMARVVQDV*FNIVHPSQADP
Trigger: TGGATCTGCTTGGCTGGGGTGGACGATATTGAAGCAGACATCCTGCACTACTCTGGCCATGGCATGGATCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS GCA 72 bp CATTCACCATCCTCACAAACATTTCCATCTTGGTCCTaGCCACTGTGGGGCCCAAGTGAATGTCTGAGAGGA +
Preference number: 6 (lower is better)
Translates to: HSPSSQTFPSWS*PLWGPSECLRG
Trigger: TCCTCTCAGACATTCACTTGGGCCCCACAGTGGGCAGGACCAAGATGGAAATGTTTGTGAGGATGGTGAATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS GCA 72 bp GTAGAGACCAGCAAAGAAGGGATTCAGGAGATAGGCTaGTACGTTCAAGGGGAAGATCTGCCCAGCATGTGT +
Preference number: 6 (lower is better)
Translates to: VETSKEGIQEIG*YVQGEDLPSMC
Trigger: ACACATGCTGGGCAGATCTTCCCCTTGAACGTAGCAGCCTATCTCCTGAATCCCTTCTTTGCTGGTCTCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6
CDS TCA 72 bp CAGGGATTCCAGAAGTGCAAACCAGTTGCTGACATCTaGCGTGTAGTACTCATGATTGCCTGTGACGAAGTA +
Preference number: 6 (lower is better)
Translates to: QGFQKCKPVADI*RVVLMIACDEV
Trigger: TACTTCGTCACAGGCAATCATGAGTACTACACGTCAGATGTCAGCAACTGGTTTGCACTTCTGGAATCCCTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000342462.5
ENST00000416695.6