RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TMEM87A (Homo sapiens)

Ensembl gene IDs: ENSG00000103978

Ensembl transcript IDs: ENST00000307216.10, ENST00000389834.9, ENST00000448392.5, ENST00000562946.5, ENST00000564329.1, ENST00000568067.1, ENST00000568400.5, ENST00000568432.1, ENST00000569075.5

Found 238 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp CCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTaGACCACATTGCCAGCAATGGGATGTGTCACAATAGCAGATGTC +
Preference number: 1 (lower is better)
Translates to: PPLEAYKTVVKSFGV*TTLPAMGCVTIADV
Trigger: GACATCTGCTATTGTGACACATCCCATTGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR GCA 90 bp TCAGTAAGATGTTCTCTTTGTTCTGACACCTCTCGCCAACTCCAATaGCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTA +
Preference number: 1 (lower is better)
Translates to: SVRCSLCSDTSRQLQ*PKIKEQIRMSLLPL
Trigger: TAAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAGAGGTGTCAGAACAAAGAGAACATCTTACTGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR CCA 90 bp TGCAAGTCTACTGCTTGGGAGGAGGAACTAAAACAATTAGCAATTTaGAGACAGGTGGAAAAGCATTCATTCGGGCACACACTAAATTTA +
Preference number: 1 (lower is better)
Translates to: CKSTAWEEELKQLAI*RQVEKHSFGHTLNL
Trigger: TAAATTTAGTGTGTGCCCGAATGAATGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTTTAGTTCCTCCTCCCAAGCAGTAGACTTGCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR GCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTGAGTGTGCACCACATTaGCAGCAATGGGATGTGTCA +
Preference number: 2 (lower is better)
Translates to: DTRTVHPKERAAVQGLHAECAPH*QQWDVS
Trigger: TGACACATCCCATTGCTGGCAATGTGGTGCACACTC...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTAGGCAAACAAAACATTaGCTAAGGACCCTGCAATGC +
Preference number: 2 (lower is better)
Translates to: DTRTVHPKERAAVQGLHARQTKH*LRTLQC
Trigger: GCATTGCAGGGTCCTTAGGCAATGTTTTGTTTGCCT...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTCTCAATCACAGCACTTaGAGCACCTCTCTGCATAAA +
Preference number: 2 (lower is better)
Translates to: DTRTVHPKERAAVQGLHALNHST*STSLHK
Trigger: TTTATGCAGAGAGGTGCTCCAAGTGCTGTGATTGAG...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTACAGGCAGTTGCTCCTaGAGATTACATATTATGGTG +
Preference number: 2 (lower is better)
Translates to: DTRTVHPKERAAVQGLHATGSCS*RLHIMV
Trigger: CACCATAATATGTAATCTCCAGGAGCAACTGCCTGT...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTTCATTGATAGAACTATaGCTCCTTAACTCAGAAGGG +
Preference number: 2 (lower is better)
Translates to: DTRTVHPKERAAVQGLHASLIEL*LLNSEG
Trigger: CCCTTCTGAGTTAAGGAGCCATAGTTCTATCAATGA...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CCA 90 bp ACCAGGGTTCGAGCCAGTGAGCGTTTCACTGCTGAAAGCAGCTCTGCAAGGATCTTGCCAAGTTTGCAATaGTTCATGCATTGCGGTTTT +
Preference number: 2 (lower is better)
Translates to: TRVRASERFTAESSSARILPSLQ*FMHCGF
Trigger: AAAACCGCAATGCATGAACCATTGCAAACTTGGCAA...GATCCTTGCAGAGCTGCTTTCAGCAGTGAAACGCTCACTGGCTCGAACCCTGGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR TCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTATAAGCTACAACTTCTaGAGCATTACAGTTCCTCTA +
Preference number: 2 (lower is better)
Translates to: DTRTVHPKERAAVQGLHAISYNF*SITVPL
Trigger: TAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTAT...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp ATCGGATATTCTGAAATTCCGCATAGAAGACAGCTTTCTCAAGCATTCCCAGGAGTAGCAGGCAGACCATaGCAGCCACAGAACACCAAA +
Preference number: 2 (lower is better)
Translates to: IGYSEIPHRRQLSQAFPGVAGRP*QPQNTK
Trigger: TTTGGTGTTCTGTGGCTGGCATGGTCTGCCTGCTAC...TCCTGGGAATGCTTGAGAAAGCTGTCTTCTATGCGGAATTTCAGAATATCCGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR CCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATATCCATGTCAGAGTCTaGGAGGAAAGGGGGCAGCAG +
Preference number: 2 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNIHVRV*EERGQQ
Trigger: CTGCTGCCCCCTTTCCTCCCAGACTCTGACATGGAT...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCATCTCGCCAACTCCAATaGCCAAAGATCAAGGAACAG +
Preference number: 2 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPASRQLQ*PKIKEQ
Trigger: CTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAGA...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTCTAAGGACCCTGCAATaGCACCCTTGGAGGCTTACA +
Preference number: 2 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSLRTLQ*HPWRLT
Trigger: TGTAAGCCTCCAAGGGTGGCATTGCAGGGTCCTTAG...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp TGCTACTACAACCTTATGAAGAGTGACTCCAAGGCGTGGCTTGACGATGCCATAGTTTGCAATGGTTCATaGATTGCGGTTTTGTCTCCA +
Preference number: 2 (lower is better)
Translates to: CYYNLMKSDSKAWLDDAIVCNGS*IAVLSP
Trigger: TGGAGACAAAACCGCAATGCATGAACCATTGCAAAC...TATGGCATCGTCAAGCCACGCCTTGGAGTCACTCTTCATAAGGTTGTAGTAGCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR GCA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCAAAATTACAGGCAGTTaGTCCTGGAGATTACATATT +
Preference number: 2 (lower is better)
Translates to: ITVPLARCSITALGAPLCKITGS*SWRLHI
Trigger: AATATGTAATCTCCAGGAGCAACTGCCTGTAATTTT...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp AGATTAAGCAGTACTAACCCCAGTAACTCTGAGGACCCCTTCCATGCCAGAGAAATGTATGGTGCATCTTaGCAAGTTTGCAATGGTTCA +
Preference number: 2 (lower is better)
Translates to: RLSSTNPSNSEDPFHAREMYGAS*QVCNGS
Trigger: TGAACCATTGCAAACTTGGCAAGATGCACCATACAT...TTCTCTGGCATGGAAGGGGTCCTCAGAGTTACTGGGGTTAGTACTGCTTAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR TCA 90 bp ATCGGATATTCTGAAATTCCGCATAGAAGACAGCTTTCTCAAGCATTCCCAGGAGATAGTCTTCAAGTGTaGGGTATTCATAGGGACCCT +
Preference number: 2 (lower is better)
Translates to: IGYSEIPHRRQLSQAFPGDSLQV*GIHRDP
Trigger: AGGGTCCCTATGAATACCTCACACTTGAAGACTATC...TCCTGGGAATGCTTGAGAAAGCTGTCTTCTATGCGGAATTTCAGAATATCCGAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR TCA 90 bp TTGGGAGGAGGAACTAAAACAATTAGCAATTTGGAGACAGGTGGAAAAGCATTCGCTACTACAACCTTATaGAGAGTGACTCCAAGGCGT +
Preference number: 2 (lower is better)
Translates to: LGGGTKTISNLETGGKAFATTTL*RVTPRR
Trigger: ACGCCTTGGAGTCACTCTTCATAAGGTTGTAGTAGC...GAATGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTTTAGTTCCTCCTCCCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR TCA 90 bp TTGGGAGGAGGAACTAAAACAATTAGCAATTTGGAGACAGGTGGAAAAGCATTCGCACCAATCCAAAACTaGATTCTCAGGAGATCTCTC +
Preference number: 2 (lower is better)
Translates to: LGGGTKTISNLETGGKAFAPIQN*ILRRSL
Trigger: GAGAGATCTCCTGAGAATTCAGTTTTGGATTGGTGC...GAATGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTTTAGTTCCTCCTCCCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR GCA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGACAACACACTTAAGTTaGATGAACATCCATGTCAGA +
Preference number: 2 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVTTHLS*MNIHVR
Trigger: TCTGACATGGATGTTCATGCAACTTAAGTGTGTTGT...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATAAAAGTTTCGGAGTGTaGACCACATTGCCAGCAATG +
Preference number: 2 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNKSFGV*TTLPAM
Trigger: CATTGCTGGCAATGTGGTGCACACTCCGAAACTTTT...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATAGGCAAACAAAACATTaGCTAAGGACCCTGCAATGC +
Preference number: 2 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNRQTKH*LRTLQC
Trigger: GCATTGCAGGGTCCTTAGGCAATGTTTTGTTTGCCT...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR CAA 90 bp ATGCAAGTCTACTGCTTGGGAGGAGGAACTAAAACAATTAGCAATTaGGAGACAGGTGGAAAAGCATTCATTCGGGCACACACTAAATTT +
Preference number: 2 (lower is better)
Translates to: MQVYCLGGGTKTISN*ETGGKAFIRAHTKF
Trigger: AAATTTAGTGTGTGCCCGAATGAATGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTTTAGTTCCTCCTCCCAAGCAGTAGACTTGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR TCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAGACTTCCCAGGAAAATaGAAGGTAGTTAACAATTTC +
Preference number: 2 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPADFPGK*KVVNNF
Trigger: GAAATTGTTAACTACCTTTCATTTTCCTGGGAAGTC...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR TCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGACTTCCCAGGAAAATaGAAGGTAGTTAACAATTTC +
Preference number: 2 (lower is better)
Translates to: VSKPIPDTRTVHPKERAADFPGK*KVVNNF
Trigger: GAAATTGTTAACTACCTTTCATTTTCCTGGGAAGTC...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR TCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAATAAGCTACAACTTCTaGAGCATTACAGTTCCTCTA +
Preference number: 2 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAISYNF*SITVPL
Trigger: TAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTAT...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTTCATTGATAGAACTATaGCTCCTTAACTCAGAAGGG +
Preference number: 2 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSSLIEL*LLNSEG
Trigger: CCCTTCTGAGTTAAGGAGCCATAGTTCTATCAATGA...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATACAACACACTTAAGTTaGATGAACATCCATGTCAGA +
Preference number: 2 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNTTHLS*MNIHVR
Trigger: TCTGACATGGATGTTCATGCAACTTAAGTGTGTTGT...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
39% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR GCA 90 bp TTAAAGCAAACAGAAAGAAGCCCACAGACATTTCCAATCCACACTGTCAAGATGCAACTCTACTTCTTCTaGCTTGAAGTTATAGATTTC +
Preference number: 2 (lower is better)
Translates to: LKQTERSPQTFPIHTVKMQLYFF*LEVIDF
Trigger: GAAATCTATAACTTCAAGGCAGAAGAAGTAGAGTTG...CATCTTGACAGTGTGGATTGGAAATGTCTGTGGGCTTCTTTCTGTTTGCTTTAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR CAA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCGGAGTGTGCACCACATaGCCAGCAATGGGATGTGTC +
Preference number: 3 (lower is better)
Translates to: ITVPLARCSITALGAPLCGVCTT*PAMGCV
Trigger: GACACATCCCATTGCTGGCAATGTGGTGCACACTCC...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CAA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTCTGCAAGATGTAACCTaGACTTCCCAGGAAAATGAA +
Preference number: 3 (lower is better)
Translates to: DTRTVHPKERAAVQGLHALQDVT*TSQENE
Trigger: TTCATTTTCCTGGGAAGTCAAGGTTACATCTTGCAG...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CAA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCCAGATCAGGATGTCATaGCTTCCTTTAATCCCATGG +
Preference number: 3 (lower is better)
Translates to: ITVPLARCSITALGAPLCQIRMS*LPLIPW
Trigger: CCATGGGATTAAAGGAAGCAATGACATCCTGATCTG...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CAA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCACCTGCAATGCCACCCTaGGAGGCTTACAAAACAGTA +
Preference number: 3 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAPAMPP*EAYKTV
Trigger: TACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CAA 90 bp TGCTACTACAACCTTATGAAGAGTGACTCCAAGGCGTGGCTTGACGATGCCATATGCATCTTGCCAAGTTaGCAATGGTTCATGCATTGC +
Preference number: 3 (lower is better)
Translates to: CYYNLMKSDSKAWLDDAICILPS*QWFMHC
Trigger: GCAATGCATGAACCATTGCAAACTTGGCAAGATGCA...TATGGCATCGTCAAGCCACGCCTTGGAGTCACTCTTCATAAGGTTGTAGTAGCA
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR-3UTR CAA 90 bp AGATTAAGCAGTACTAACCCCAGTAACTCTGAGGACCCCTTCCATGCCAGAGAATCATGCATTGCGGTTTaGTCTCCAATAAAGGTAAGG +
Preference number: 3 (lower is better)
Translates to: RLSSTNPSNSEDPFHARESCIAV*SPIKVR
Trigger: CCTTACCTTTATTGGAGACAAAACCGCAATGCATGA...TTCTCTGGCATGGAAGGGGTCCTCAGAGTTACTGGGGTTAGTACTGCTTAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR GCA 72 bp TGTTCTCTTTGTTCTGACACCTCTCGCCAACTCCAATaGCCAAAGATCAAGGAACAGATCAGGATGTCATTG +
Preference number: 3 (lower is better)
Translates to: CSLCSDTSRQLQ*PKIKEQIRMSL
Trigger: CAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAGAGGTGTCAGAACAAAGAGAACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR CCA 72 bp TACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTaGAGCACCTCTCTGCATAAAGGCAAACAAAACATT +
Preference number: 3 (lower is better)
Translates to: YSSSSTVLNHST*STSLHKGKQNI
Trigger: AATGTTTTGTTTGCCTTTATGCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CAA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCACAGATCAGGATGTCATaGCTTCCTTTAATCCCATGG +
Preference number: 3 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAQIRMS*LPLIPW
Trigger: CCATGGGATTAAAGGAAGCAATGACATCCTGATCTG...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR TCA 72 bp AGCAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTaGAGCATTACAGTTCCTCTAGCACGGTGCTCAATC +
Preference number: 3 (lower is better)
Translates to: SRTCFLCISYNF*SITVPLARCSI
Trigger: GATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTGCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CAA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCACTGCAAGATGTAACCTaGACTTCCCAGGAAAATGAA +
Preference number: 3 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPALQDVT*TSQENE
Trigger: TTCATTTTCCTGGGAAGTCAAGGTTACATCTTGCAG...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR GCA 72 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTaGACCACATTGCCAGCAATGGGATGTGTCACAATA +
Preference number: 3 (lower is better)
Translates to: EAYKTVVKSFGV*TTLPAMGCVTI
Trigger: TATTGTGACACATCCCATTGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CAA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGAAAAATTACAGGCAGTaGCTCCTGGAGATTACATAT +
Preference number: 3 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVKNYRQ*LLEITY
Trigger: ATATGTAATCTCCAGGAGCAACTGCCTGTAATTTTT...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR TCA 72 bp ACCTCTGCAAGATGTAACCTTGACTTCCCAGGAAAATaGAAGGTAGTTAACAATTTCCCCCATCACCTATGT +
Preference number: 3 (lower is better)
Translates to: TSARCNLDFPGK*KVVNNFPHHLC
Trigger: ACATAGGTGATGGGGGAAATTGTTAACTACCTTTCATTTTCCTGGGAAGTCAAGGTTACATCTTGCAGAGGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CAA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAAAAAATTACAGGCAGTaGCTCCTGGAGATTACATAT +
Preference number: 3 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAKNYRQ*LLEITY
Trigger: ATATGTAATCTCCAGGAGCAACTGCCTGTAATTTTT...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR-3UTR CAA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAACAACACACTTAAGTaGCATGAACATCCATGTCAG +
Preference number: 3 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSNNTLK*HEHPCQ
Trigger: CTGACATGGATGTTCATGCAACTTAAGTGTGTTGTT...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR TCA 72 bp AGAAATAGAGTGCTTCAAATGAATCCCATCACCTTGTaGTGTCCCTTATTAACAGTCTCTAAACCAATACCA +
Preference number: 3 (lower is better)
Translates to: RNRVLQMNPITL*CPLLTVSKPIP
Trigger: TGGTATTGGTTTAGAGACTGTTAATAAGGGACATCACAAGGTGATGGGATTCATTTGAAGCACTCTATTTCT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR GCA 72 bp TGTACAATAAAAATGTATGGTGCATCTTGCCAAGTTTaGAATGGTTCATGCATTGCGGTTTTGTCTCCAATA +
Preference number: 3 (lower is better)
Translates to: CTIKMYGASCQV*NGSCIAVLSPI
Trigger: TATTGGAGACAAAACCGCAATGCATGAACCATTGCAAACTTGGCAAGATGCACCATACATTTTTATTGTACA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR CCA 72 bp AATAAAAATGTATGGTGCATCTTGCCAAGTTTGCAATaGTTCATGCATTGCGGTTTTGTCTCCAATAAAGGT +
Preference number: 3 (lower is better)
Translates to: NKNVWCILPSLQ*FMHCGFVSNKG
Trigger: ACCTTTATTGGAGACAAAACCGCAATGCATGAACCATTGCAAACTTGGCAAGATGCACCATACATTTTTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR TCA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCATGACAGGCAACACCTaGAGCCACGCAGCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: ITVPLARCSITALGAPLCMTGNT*SHAAAA
Trigger: GGCGGCGGCTGCGTGGCTTCAGGTGTTGCCTGTCAT...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTGACAGTGGTGACGGGTaGGCTCCCAGAAGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: DTRTVHPKERAAVQGLHADSGDG*APRSRR
Trigger: TCTTCTGCTTCTGGGAGCTCACCCGTCACCACTGTC...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp GCGTGGCTTGACGATGCCATATCCCAGACTGACTATGATGACCAGGGTTCGAGCGACAGTGGTGACGGGTaGGCTCCCAGAAGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: AWLDDAISQTDYDDQGSSDSGDG*APRSRR
Trigger: TCTTCTGCTTCTGGGAGCTCACCCGTCACCACTGTC...GCTCGAACCCTGGTCATCATAGTCAGTCTGGGATATGGCATCGTCAAGCCACGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp GCGTGGCTTGACGATGCCATATCCCAGACTGACTATGATGACCAGGGTTCGAGCGACGGTATCGGAATGTaGCATTTGGACCGGTCGGCA +
Preference number: 4 (lower is better)
Translates to: AWLDDAISQTDYDDQGSSDGIGM*HLDRSA
Trigger: TGCCGACCGGTCCAAATGGCACATTCCGATACCGTC...GCTCGAACCCTGGTCATCATAGTCAGTCTGGGATATGGCATCGTCAAGCCACGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTGCCTTCTTCCGGCTCTaGTCTAAGGGCGGGATTATC +
Preference number: 4 (lower is better)
Translates to: DTRTVHPKERAAVQGLHAAFFRL*SKGGII
Trigger: GATAATCCCGCCCTTAGAGCAGAGCCGGAAGAAGGC...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS-3UTR GCA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCGGCAGCAGCTACGGTTaGCGGTCCCGCACTGAAAAA +
Preference number: 4 (lower is better)
Translates to: ITVPLARCSITALGAPLCGSSYG*RSRTEK
Trigger: TTTTTCAGTGCGGGACCGGCAACCGTAGCTGCTGCC...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTCTAAGGACCCTGCAATaGCACCCTTGGAGGCTTACA +
Preference number: 4 (lower is better)
Translates to: DTRTVHPKERAAVQGLHALRTLQ*HPWRLT
Trigger: TGTAAGCCTCCAAGGGTGGCATTGCAGGGTCCTTAG...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp ACCAGGGTTCGAGCCAGTGAGCGTTTCACTGCTGAAAGCAGCTCTGCAAGGATCCCATCTTCACAGCCGTaGAGTGCCTACCGAAAGCAT +
Preference number: 4 (lower is better)
Translates to: TRVRASERFTAESSSARIPSSQP*SAYRKH
Trigger: ATGCTTTCGGTAGGCACTCCACGGCTGTGAAGATGG...GATCCTTGCAGAGCTGCTTTCAGCAGTGAAACGCTCACTGGCTCGAACCCTGGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR TCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTATGACAGGCAACACCTaGAGCCACGCAGCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFMTGNT*SHAAAA
Trigger: GGCGGCGGCTGCGTGGCTTCAGGTGTTGCCTGTCAT...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCGACGGTATCGGAATGTaGCATTTGGACCGGTCGGCA +
Preference number: 4 (lower is better)
Translates to: ITVPLARCSITALGAPLCDGIGM*HLDRSA
Trigger: TGCCGACCGGTCCAAATGGCACATTCCGATACCGTC...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp ATCGGATATTCTGAAATTCCGCATAGAAGACAGCTTTCTCAAGCATTCCCAGGAATGACAGGCAACACCTaGAGCCACGCAGCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: IGYSEIPHRRQLSQAFPGMTGNT*SHAAAA
Trigger: GGCGGCGGCTGCGTGGCTTCAGGTGTTGCCTGTCAT...TCCTGGGAATGCTTGAGAAAGCTGTCTTCTATGCGGAATTTCAGAATATCCGAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR TCA 90 bp TGCTACTACAACCTTATGAAGAGTGACTCCAAGGCGTGGCTTGACGATGCCATATTGCCGGTCCCGCACTaGAAAACGACAGTGGTGACG +
Preference number: 4 (lower is better)
Translates to: CYYNLMKSDSKAWLDDAILPVPH*KTTVVT
Trigger: CGTCACCACTGTCGTTTTTCAGTGCGGGACCGGCAA...TATGGCATCGTCAAGCCACGCCTTGGAGTCACTCTTCATAAGGTTGTAGTAGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR TCA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCTCCCGCCAGTCCGACTaGCATGTCACTATTCTGAAC +
Preference number: 4 (lower is better)
Translates to: ITVPLARCSITALGAPLCSRQSD*HVTILN
Trigger: GTTCAGAATAGTGACATGTCAGTCGGACTGGCGGGA...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTAAACCTCTGGTTGTTTaGAGATGGTCGCCAGAGAAC +
Preference number: 4 (lower is better)
Translates to: DTRTVHPKERAAVQGLHAKPLVV*RWSPEN
Trigger: GTTCTCTGGCGACCATCTGCAAACAACCAGAGGTTT...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAGGAGCTTGTTTGCTGTaGGGCGTAGCGGCCCCTCTC +
Preference number: 4 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPAGACLL*GVAAPL
Trigger: GAGAGGGGCCGCTACGCCGCACAGCAAACAAGCTCC...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS-3UTR CCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTCTGGTTGTTTGCAGATaGTCGCCAGAGAACCATGAT +
Preference number: 4 (lower is better)
Translates to: DTRTVHPKERAAVQGLHALVVCR*SPENHD
Trigger: ATCATGGTTCTCTGGCGACCATCTGCAAACAACCAG...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTGAAAAGGCAAACCTCTaGTTGTTTGCAGATGGTCGC +
Preference number: 4 (lower is better)
Translates to: DTRTVHPKERAAVQGLHAEKANL*LFADGR
Trigger: GCGACCATCTGCAAACAACCAGAGGTTTGCCTTTTC...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCGAAAAACGACAGTGGTaGCGGGTGAGCTCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFEKRQW*RVSSQK
Trigger: CTTCTGGGAGCTCACCCGTCACCACTGTCGTTTTTC...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTGATAGTCTTCAAGTGTaGGGTATTCATAGGGACCCT +
Preference number: 4 (lower is better)
Translates to: DTRTVHPKERAAVQGLHADSLQV*GIHRDP
Trigger: AGGGTCCCTATGAATACCTCACACTTGAAGACTATC...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp ACCAGGGTTCGAGCCAGTGAGCGTTTCACTGCTGAAAGCAGCTCTGCAAGGATCGCACCAATCCAAAACTaGATTCTCAGGAGATCTCTC +
Preference number: 4 (lower is better)
Translates to: TRVRASERFTAESSSARIAPIQN*ILRRSL
Trigger: GAGAGATCTCCTGAGAATTCAGTTTTGGATTGGTGC...GATCCTTGCAGAGCTGCTTTCAGCAGTGAAACGCTCACTGGCTCGAACCCTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCGTTCCTCTAGCACGGTaGTCAATCACAGCACTTGGA +
Preference number: 4 (lower is better)
Translates to: ITVPLARCSITALGAPLCVPLAR*SITALG
Trigger: TCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAAC...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCATCCATGTCAGAGTCTaGGAGGAAAGGGGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFIHVRV*EERGQQ
Trigger: CTGCTGCCCCCTTTCCTCCCAGACTCTGACATGGAT...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTTTGCCGGTCCCGCACTaGAAAACGACAGTGGTGACG +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFLPVPH*KTTVVT
Trigger: CGTCACCACTGTCGTTTTTCAGTGCGGGACCGGCAA...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAGGCAGCAGCTACGGTTaGCGGTCCCGCACTGAAAAA +
Preference number: 4 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPAGSSYG*RSRTEK
Trigger: TTTTTCAGTGCGGGACCGGCAACCGTAGCTGCTGCC...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGGACGGTATCGGAATGTaGCATTTGGACCGGTCGGCA +
Preference number: 4 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVDGIGM*HLDRSA
Trigger: TGCCGACCGGTCCAAATGGCACATTCCGATACCGTC...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCCATCTTCACAGCCGTaGAGTGCCTACCGAAAGCAT +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFPSSQP*SAYRKH
Trigger: ATGCTTTCGGTAGGCACTCCACGGCTGTGAAGATGG...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCAGGCAAACAAAACATTaGCTAAGGACCCTGCAATGC +
Preference number: 4 (lower is better)
Translates to: ITVPLARCSITALGAPLCRQTKH*LRTLQC
Trigger: GCATTGCAGGGTCCTTAGGCAATGTTTTGTTTGCCT...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTTCAGACAGTCGTCTGTaGGCCGTGAGACTTTGGACC +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFSDSRL*AVRLWT
Trigger: GGTCCAAAGTCTCACGGCGCACAGACGACTGTCTGA...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS-3UTR CCA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGCCATCTTCACAGCCGTaGAGTGCCTACCGAAAGCAT +
Preference number: 4 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVPSSQP*SAYRKH
Trigger: ATGCTTTCGGTAGGCACTCCACGGCTGTGAAGATGG...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTTTGCCAAGTTTGCAATaGTTCATGCATTGCGGTTTT +
Preference number: 4 (lower is better)
Translates to: DTRTVHPKERAAVQGLHALPSLQ*FMHCGF
Trigger: AAAACCGCAATGCATGAACCATTGCAAACTTGGCAA...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAACAGCAAGCGCCAGATaGCATCGTCTACCCACAGCT +
Preference number: 4 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPATASAR*HRLPTA
Trigger: AGCTGTGGGTAGACGATGCCATCTGGCGCTTGCTGT...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTATCCATGTCAGAGTCTaGGAGGAAAGGGGGCAGCAG +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFIHVRV*EERGQQ
Trigger: CTGCTGCCCCCTTTCCTCCCAGACTCTGACATGGAT...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGGATTATCCGGGTCCTaGAAACGTCGCGGAGCTTGT +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAGLSGS*KRRGAC
Trigger: ACAAGCTCCGCGACGTTTCCAGGACCCGGATAATCC...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS-3UTR TCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCATGACAGGCAACACCTaGAGCCACGCAGCCGCCGCC +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSMTGNT*SHAAAA
Trigger: GGCGGCGGCTGCGTGGCTTCAGGTGTTGCCTGTCAT...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR TCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATGACAGTGGTGACGGGTaGGCTCCCAGAAGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNDSGDG*APRSRR
Trigger: TCTTCTGCTTCTGGGAGCTCACCCGTCACCACTGTC...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTTTGCCGGTCCCGCACTaGAAAACGACAGTGGTGACG +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSLPVPH*KTTVVT
Trigger: CGTCACCACTGTCGTTTTTCAGTGCGGGACCGGCAA...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCATCCCGCCAGTCCGACTaGCATGTCACTATTCTGAAC +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAASRQSD*HVTILN
Trigger: GTTCAGAATAGTGACATGTCAGTCGGACTGGCGGGA...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGCATTCGTTCCTCATCTaGATCCAGAAGGGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVHSFLI*IQKGWK
Trigger: CTTCCAGCCCTTCTGGATTCAGATGAGGAACGAATG...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTGACTTCCCAGGAAAATaGAAGGTAGTTAACAATTTC +
Preference number: 4 (lower is better)
Translates to: DTRTVHPKERAAVQGLHADFPGK*KVVNNF
Trigger: GAAATTGTTAACTACCTTTCATTTTCCTGGGAAGTC...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTGTAGCAGGCAGACCATaGCAGCCACAGAACACCAAA +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFVAGRP*QPQNTK
Trigger: TTTGGTGTTCTGTGGCTGGCATGGTCTGCCTGCTAC...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCAAGATAGAGGGCTCCTaGTACTACAACCTTATGAAG +
Preference number: 4 (lower is better)
Translates to: ITVPLARCSITALGAPLCKIEGS*YYNLMK
Trigger: CTTCATAAGGTTGTAGTAGCAGGAGCCCTCTATCTT...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCAGAAGGGCTGGAAGTaGTACATCTGTCACAGAAGA +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFQKGWK*YICHRR
Trigger: TCTTCTGTGACAGATGTAGCACTTCCAGCCCTTCTG...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCTCTCGCCAACTCCAATaGCCAAAGATCAAGGAACAG +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFSRQLQ*PKIKEQ
Trigger: CTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAGA...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATGAAAAACGACAGTGGTaGCGGGTGAGCTCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNEKRQW*RVSSQK
Trigger: CTTCTGGGAGCTCACCCGTCACCACTGTCGTTTTTC...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp TTGGGAGGAGGAACTAAAACAATTAGCAATTTGGAGACAGGTGGAAAAGCATTCGAAAAACGACAGTGGTaGCGGGTGAGCTCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: LGGGTKTISNLETGGKAFEKRQW*RVSSQK
Trigger: CTTCTGGGAGCTCACCCGTCACCACTGTCGTTTTTC...GAATGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTTTAGTTCCTCCTCCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR TCA 90 bp AGATTAAGCAGTACTAACCCCAGTAACTCTGAGGACCCCTTCCATGCCAGAGAAGATAGTCTTCAAGTGTaGGGTATTCATAGGGACCCT +
Preference number: 4 (lower is better)
Translates to: RLSSTNPSNSEDPFHAREDSLQV*GIHRDP
Trigger: AGGGTCCCTATGAATACCTCACACTTGAAGACTATC...TTCTCTGGCATGGAAGGGGTCCTCAGAGTTACTGGGGTTAGTACTGCTTAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCATTCACAGCCGTGGAGTaGCTACCGAAAGCATTTCAC +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAFTAVE*LPKAFH
Trigger: GTGAAATGCTTTCGGTAGGCACTCCACGGCTGTGAA...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS-3UTR GCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCGCATCTTGCCAAGTTTaGAATGGTTCATGCATTGCG +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFASCQV*NGSCIA
Trigger: CGCAATGCATGAACCATTGCAAACTTGGCAAGATGC...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp AGATTAAGCAGTACTAACCCCAGTAACTCTGAGGACCCCTTCCATGCCAGAGAAGCATCTTGCCAAGTTTaGAATGGTTCATGCATTGCG +
Preference number: 4 (lower is better)
Translates to: RLSSTNPSNSEDPFHAREASCQV*NGSCIA
Trigger: CGCAATGCATGAACCATTGCAAACTTGGCAAGATGC...TTCTCTGGCATGGAAGGGGTCCTCAGAGTTACTGGGGTTAGTACTGCTTAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAGTTCCTCTAGCACGGTaGTCAATCACAGCACTTGGA +
Preference number: 4 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPAVPLAR*SITALG
Trigger: TCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAAC...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATACAGCAAGCGCCAGATaGCATCGTCTACCCACAGCT +
Preference number: 4 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNTASAR*HRLPTA
Trigger: AGCTGTGGGTAGACGATGCCATCTGGCGCTTGCTGT...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGGAAAAGGCAAACCTCTaGTTGTTTGCAGATGGTCGC +
Preference number: 4 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVEKANL*LFADGR
Trigger: GCGACCATCTGCAAACAACCAGAGGTTTGCCTTTTC...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTGCTACTACAACCTTATaGAGAGTGACTCCAAGGCGT +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFATTTL*RVTPRR
Trigger: ACGCCTTGGAGTCACTCTTCATAAGGTTGTAGTAGC...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGCTACTACAACCTTATaGAGAGTGACTCCAAGGCGT +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAATTTL*RVTPRR
Trigger: ACGCCTTGGAGTCACTCTTCATAAGGTTGTAGTAGC...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCACCTTTCAAAGTGTGTaGTCATTCGTTCCTCATCTG +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFTFQSV*SFVPHL
Trigger: CAGATGAGGAACGAATGATCACACACTTTGAAAGGT...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCAATCCCATCACCTTGTaGTGTCCCTTATTAACAGTC +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFNPITL*CPLLTV
Trigger: GACTGTTAATAAGGGACATCACAAGGTGATGGGATT...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTGTAGCAGGCAGACCATaGCAGCCACAGAACACCAAA +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSVAGRP*QPQNTK
Trigger: TTTGGTGTTCTGTGGCTGGCATGGTCTGCCTGCTAC...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp TGGTTCATGCATTGCGGTTTTGTCTCCAATAAAGGTAAGGTTTGTTCCATTCTCGTAGCAGGCAGACCATaGCAGCCACAGAACACCAAA +
Preference number: 4 (lower is better)
Translates to: WFMHCGFVSNKGKVCSILVAGRP*QPQNTK
Trigger: TTTGGTGTTCTGTGGCTGGCATGGTCTGCCTGCTAC...GAGAATGGAACAAACCTTACCTTTATTGGAGACAAAACCGCAATGCATGAACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCAAGATAGAGGGCTCCTaGTACTACAACCTTATGAAG +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFKIEGS*YYNLMK
Trigger: CTTCATAAGGTTGTAGTAGCAGGAGCCCTCTATCTT...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGAATGGATGCTGCCACTaGCAAAATAAGCGTGTTGGT +
Preference number: 4 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVNGCCH*QNKRVG
Trigger: ACCAACACGCTTATTTTGGCAGTGGCAGCATCCATT...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTCAGAAGGGCTGGAAGTaGTACATCTGTCACAGAAGA +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFQKGWK*YICHRR
Trigger: TCTTCTGTGACAGATGTAGCACTTCCAGCCCTTCTG...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATCTAAGGACCCTGCAATaGCACCCTTGGAGGCTTACA +
Preference number: 4 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNLRTLQ*HPWRLT
Trigger: TGTAAGCCTCCAAGGGTGGCATTGCAGGGTCCTTAG...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTGGAGCACCTCTCTaGATAAAGGCAAACAAAACA +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFLGAPL*IKANKT
Trigger: TGTTTTGTTTGCCTTTATGCAGAGAGGTGCTCCAAG...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCACTGGTTGTTTGCAGATaGTCGCCAGAGAACCATGAT +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAALVVCR*SPENHD
Trigger: ATCATGGTTCTCTGGCGACCATCTGCAAACAACCAG...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCGACAGTGGTGACGGGTaGGCTCCCAGAAGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSDSGDG*APRSRR
Trigger: TCTTCTGCTTCTGGGAGCTCACCCGTCACCACTGTC...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR TCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCTTGCCGGTCCCGCACTaGAAAACGACAGTGGTGACG +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSLPVPH*KTTVVT
Trigger: CGTCACCACTGTCGTTTTTCAGTGCGGGACCGGCAA...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR TCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAGCACCAATCCAAAACTaGATTCTCAGGAGATCTCTC +
Preference number: 4 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPAAPIQN*ILRRSL
Trigger: GAGAGATCTCCTGAGAATTCAGTTTTGGATTGGTGC...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTTTCCTCAGACAATGGTaGAAAGGCAAACCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFFLRQW*KGKPLV
Trigger: AACCAGAGGTTTGCCTTTTCACCATTGTCTGAGGAA...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCATTCCTCAGACAATGGTaGAAAGGCAAACCTCTGGTT +
Preference number: 4 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPAFLRQW*KGKPLV
Trigger: AACCAGAGGTTTGCCTTTTCACCATTGTCTGAGGAA...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTCATTCGTTCCTCATCTaGATCCAGAAGGGCTGGAAG +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSHSFLI*IQKGWK
Trigger: CTTCCAGCCCTTCTGGATTCAGATGAGGAACGAATG...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp AGATTAAGCAGTACTAACCCCAGTAACTCTGAGGACCCCTTCCATGCCAGAGAAATCAGAGCCCAAAAGTaGCTTAAAGCAAACAGAAAG +
Preference number: 4 (lower is better)
Translates to: RLSSTNPSNSEDPFHAREIRAQK*LKANRK
Trigger: CTTTCTGTTTGCTTTAAGTCACTTTTGGGCTCTGAT...TTCTCTGGCATGGAAGGGGTCCTCAGAGTTACTGGGGTTAGTACTGCTTAATCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCGGCAGCAGCTACGGTTaGCGGTCCCGCACTGAAAAA +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSGSSYG*RSRTEK
Trigger: TTTTTCAGTGCGGGACCGGCAACCGTAGCTGCTGCC...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR GCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGCATCTTGCCAAGTTTaGAATGGTTCATGCATTGCG +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAASCQV*NGSCIA
Trigger: CGCAATGCATGAACCATTGCAAACTTGGCAAGATGC...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCATGTATGGTGCATCTTaGCAAGTTTGCAATGGTTCA +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFMYGAS*QVCNGS
Trigger: TGAACCATTGCAAACTTGGCAAGATGCACCATACAT...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCAGCGTGTTGGTGAAATaGCGATACAAAGAGAGTTTT +
Preference number: 4 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFSVLVK*RYKESF
Trigger: AAAACTCTCTTTGTATCGGCATTTCACCAACACGCT...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTGAGTGTGCACCACATTaGCAGCAATGGGATGTGTCA +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSECAPH*QQWDVS
Trigger: TGACACATCCCATTGCTGGCAATGTGGTGCACACTC...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAAAAAGTTTCGGAGTGTaGACCACATTGCCAGCAATG +
Preference number: 4 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPAKSFGV*TTLPAM
Trigger: CATTGCTGGCAATGTGGTGCACACTCCGAAACTTTT...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTCTCAATCACAGCACTTaGAGCACCTCTCTGCATAAA +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFLNHST*STSLHK
Trigger: TTTATGCAGAGAGGTGCTCCAAGTGCTGTGATTGAG...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
3UTR CAA 72 bp TACTGCTTGGGAGGAGGAACTAAAACAATTAGCAATTaGGAGACAGGTGGAAAAGCATTCATTCGGGCACAC +
Preference number: 4 (lower is better)
Translates to: YCLGGGTKTISN*ETGGKAFIRAH
Trigger: GTGTGCCCGAATGAATGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTTTAGTTCCTCCTCCCAAGCAGTA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR TCA 90 bp CAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCAACGAAGAAAAACGACAGTGGTaGCGGGTGAGCTCCCAGAAG +
Preference number: 4 (lower is better)
Translates to: QNGRIRNSENLLIHKSNEEKRQW*RVSSQK
Trigger: CTTCTGGGAGCTCACCCGTCACCACTGTCGTTTTTC...TTCGTTGCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR TCA 90 bp TTAAAGCAAACAGAAAGAAGCCCACAGACATTTCCAATCCACACTGTCAAGATGGCTACTACAACCTTATaGAGAGTGACTCCAAGGCGT +
Preference number: 4 (lower is better)
Translates to: LKQTERSPQTFPIHTVKMATTTL*RVTPRR
Trigger: ACGCCTTGGAGTCACTCTTCATAAGGTTGTAGTAGC...CATCTTGACAGTGTGGATTGGAAATGTCTGTGGGCTTCTTTCTGTTTGCTTTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR TCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGACATGTCACTATTCTaGACTTCATGGTTGTCCAGA +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAADMSLF*TSWLSR
Trigger: TCTGGACAACCATGAAGTTCAGAATAGTGACATGTC...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAACCTTTCAAAGTGTGTaGTCATTCGTTCCTCATCTG +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAATFQSV*SFVPHL
Trigger: CAGATGAGGAACGAATGATCACACACTTTGAAAGGT...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCGACGGTATCGGAATGTaGCATTTGGACCGGTCGGCA +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSDGIGM*HLDRSA
Trigger: TGCCGACCGGTCCAAATGGCACATTCCGATACCGTC...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR GCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCGTGATCTCAGCTCACTaGAGCCTCCACCTCCCAAGT +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSVISAH*SLHLPS
Trigger: ACTTGGGAGGTGGAGGCTGCAGTGAGCTGAGATCAC...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR GCA 90 bp CAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCAACGAATGGAATCTCACTGGCTaGCCAGGCTGGAGTGCAGTA +
Preference number: 4 (lower is better)
Translates to: QNGRIRNSENLLIHKSNEWNLTG*PGWSAV
Trigger: TACTGCACTCCAGCCTGGGCAGCCAGTGAGATTCCA...TTCGTTGCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR GCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTGTTTGCAATGGTTCATaGATTGCGGTTTTGTCTCCA +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFVCNGS*IAVLSP
Trigger: TGGAGACAAAACCGCAATGCATGAACCATTGCAAAC...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGATGTATGGTGCATCTTaGCAAGTTTGCAATGGTTCA +
Preference number: 4 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVMYGAS*QVCNGS
Trigger: TGAACCATTGCAAACTTGGCAAGATGCACCATACAT...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAAACCTCTGGTTGTTTaGAGATGGTCGCCAGAGAAC +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSKPLVV*RWSPEN
Trigger: GTTCTCTGGCGACCATCTGCAAACAACCAGAGGTTT...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTCTTGGAGCACCTCTCTaGATAAAGGCAAACAAAACA +
Preference number: 4 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFLGAPL*IKANKT
Trigger: TGTTTTGTTTGCCTTTATGCAGAGAGGTGCTCCAAG...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp CAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCAACGAATCGGAATGTGCCATTTaGACCGGTCGGCAGCAGCTA +
Preference number: 4 (lower is better)
Translates to: QNGRIRNSENLLIHKSNESECAI*TGRQQL
Trigger: TAGCTGCTGCCGACCGGTCCAAATGGCACATTCCGA...TTCGTTGCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR CCA 90 bp CAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCAACGAACCACATTGGCCAAGCTaGTCTCGAACTCCCAACCTC +
Preference number: 4 (lower is better)
Translates to: QNGRIRNSENLLIHKSNEPHWPS*SRTPNL
Trigger: GAGGTTGGGAGTTCGAGACCAGCTTGGCCAATGTGG...TTCGTTGCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR TCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCCCAGAAGCAGAAGAATaGCAGGCAACACCTGAAGCC +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSPEAEE*QATPEA
Trigger: GGCTTCAGGTGTTGCCTGTCATTCTTCTGCTTCTGG...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR TCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTGATAGTCTTCAAGTGTaGGGTATTCATAGGGACCCT +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSDSLQV*GIHRDP
Trigger: AGGGTCCCTATGAATACCTCACACTTGAAGACTATC...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCCAACCTCAAGTCATCTaGCCACCTTGGCCTCCCAAA +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSQPQVI*PPWPPK
Trigger: TTTGGGAGGCCAAGGTGGGCAGATGACTTGAGGTTG...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR GCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAAGCGTGTTGGTGAAATaGCGATACAAAGAGAGTTTT +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAASVLVK*RYKESF
Trigger: AAAACTCTCTTTGTATCGGCATTTCACCAACACGCT...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAATGGATGCTGCCACTaGCAAAATAAGCGTGTTGGT +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSNGCCH*QNKRVG
Trigger: ACCAACACGCTTATTTTGGCAGTGGCAGCATCCATT...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGGCAAACAAAACATTaGCTAAGGACCCTGCAATGC +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSRQTKH*LRTLQC
Trigger: GCATTGCAGGGTCCTTAGGCAATGTTTTGTTTGCCT...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp CAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCAACGAACCATCTTCACAGCCGTaGAGTGCCTACCGAAAGCAT +
Preference number: 4 (lower is better)
Translates to: QNGRIRNSENLLIHKSNEPSSQP*SAYRKH
Trigger: ATGCTTTCGGTAGGCACTCCACGGCTGTGAAGATGG...TTCGTTGCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR CCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCATTGCCAAGTTTGCAATaGTTCATGCATTGCGGTTTT +
Preference number: 4 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPALPSLQ*FMHCGF
Trigger: AAAACCGCAATGCATGAACCATTGCAAACTTGGCAA...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATCTCAATCACAGCACTTaGAGCACCTCTCTGCATAAA +
Preference number: 4 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNLNHST*STSLHK
Trigger: TTTATGCAGAGAGGTGCTCCAAGTGCTGTGATTGAG...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp ATCGGATATTCTGAAATTCCGCATAGAAGACAGCTTTCTCAAGCATTCCCAGGATGCAAGTCTACTGCTTaGGAGGAGGAACTAAAACAA +
Preference number: 4 (lower is better)
Translates to: IGYSEIPHRRQLSQAFPGCKSTA*EEELKQ
Trigger: TTGTTTTAGTTCCTCCTCCCAAGCAGTAGACTTGCA...TCCTGGGAATGCTTGAGAAAGCTGTCTTCTATGCGGAATTTCAGAATATCCGAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR TCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTGACATGTCACTATTCTaGACTTCATGGTTGTCCAGA +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSDMSLF*TSWLSR
Trigger: TCTGGACAACCATGAAGTTCAGAATAGTGACATGTC...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAATAAGCTACAACTTCTaGAGCATTACAGTTCCTCTA +
Preference number: 4 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPAISYNF*SITVPL
Trigger: TAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTAT...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp CAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCAACGAATTCACAGCCGTGGAGTaGCTACCGAAAGCATTTCAC +
Preference number: 4 (lower is better)
Translates to: QNGRIRNSENLLIHKSNEFTAVE*LPKAFH
Trigger: GTGAAATGCTTTCGGTAGGCACTCCACGGCTGTGAA...TTCGTTGCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR GCA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGCAACTCTACTTCTTCTaGCTTGAAGTTATAGATTTC +
Preference number: 4 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVQLYFF*LEVIDF
Trigger: GAAATCTATAACTTCAAGGCAGAAGAAGTAGAGTTG...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp TTAAAGCAAACAGAAAGAAGCCCACAGACATTTCCAATCCACACTGTCAAGATGGTTTGCAATGGTTCATaGATTGCGGTTTTGTCTCCA +
Preference number: 4 (lower is better)
Translates to: LKQTERSPQTFPIHTVKMVCNGS*IAVLSP
Trigger: TGGAGACAAAACCGCAATGCATGAACCATTGCAAAC...CATCTTGACAGTGTGGATTGGAAATGTCTGTGGGCTTCTTTCTGTTTGCTTTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp TTGGGAGGAGGAACTAAAACAATTAGCAATTTGGAGACAGGTGGAAAAGCATTCAAGATAGAGGGCTCCTaGTACTACAACCTTATGAAG +
Preference number: 4 (lower is better)
Translates to: LGGGTKTISNLETGGKAFKIEGS*YYNLMK
Trigger: CTTCATAAGGTTGTAGTAGCAGGAGCCCTCTATCTT...GAATGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTTTAGTTCCTCCTCCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR CCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATACAGGCAGTTGCTCCTaGAGATTACATATTATGGTG +
Preference number: 4 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNTGSCS*RLHIMV
Trigger: CACCATAATATGTAATCTCCAGGAGCAACTGCCTGT...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
41% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAAAAATTACAGGCAGTTaGTCCTGGAGATTACATATT +
Preference number: 4 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAKITGS*SWRLHI
Trigger: AATATGTAATCTCCAGGAGCAACTGCCTGTAATTTT...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR TCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTGACTTCCCAGGAAAATaGAAGGTAGTTAACAATTTC +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSDFPGK*KVVNNF
Trigger: GAAATTGTTAACTACCTTTCATTTTCCTGGGAAGTC...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp ATCGGATATTCTGAAATTCCGCATAGAAGACAGCTTTCTCAAGCATTCCCAGGACAACTCTACTTCTTCTaGCTTGAAGTTATAGATTTC +
Preference number: 4 (lower is better)
Translates to: IGYSEIPHRRQLSQAFPGQLYFF*LEVIDF
Trigger: GAAATCTATAACTTCAAGGCAGAAGAAGTAGAGTTG...TCCTGGGAATGCTTGAGAAAGCTGTCTTCTATGCGGAATTTCAGAATATCCGAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCTGGATTACAGGTGCCTaGCACCATGAGCAACTAATT +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSWITGA*HHEQLI
Trigger: AATTAGTTGCTCATGGTGGCAGGCACCTGTAATCCA...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR GCA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTACAACACACTTAAGTTaGATGAACATCCATGTCAGA +
Preference number: 4 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSTTHLS*MNIHVR
Trigger: TCTGACATGGATGTTCATGCAACTTAAGTGTGTTGT...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp CAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCAACGAAAAAGTTTCACCACATTaGCCAAGCTGGTCTCGAACT +
Preference number: 4 (lower is better)
Translates to: QNGRIRNSENLLIHKSNEKVSPH*PSWSRT
Trigger: AGTTCGAGACCAGCTTGGCCAATGTGGTGAAACTTT...TTCGTTGCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR GCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATCAACTCTACTTCTTCTaGCTTGAAGTTATAGATTTC +
Preference number: 4 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNQLYFF*LEVIDF
Trigger: GAAATCTATAACTTCAAGGCAGAAGAAGTAGAGTTG...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR GCA 90 bp TACAATAAAAATGTATGGTGCATCTTGCCAAGTTTGCAATGGTTCATGCATTGCATGTATGGTGCATCTTaGCAAGTTTGCAATGGTTCA +
Preference number: 4 (lower is better)
Translates to: YNKNVWCILPSLQWFMHCMYGAS*QVCNGS
Trigger: TGAACCATTGCAAACTTGGCAAGATGCACCATACAT...GCAATGCATGAACCATTGCAAACTTGGCAAGATGCACCATACATTTTTATTGTA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR GCA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATAAAATTACAGGCAGTTaGTCCTGGAGATTACATATT +
Preference number: 4 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNKITGS*SWRLHI
Trigger: AATATGTAATCTCCAGGAGCAACTGCCTGTAATTTT...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CCA 90 bp TGGTTCATGCATTGCGGTTTTGTCTCCAATAAAGGTAAGGTTTGTTCCATTCTCAAACAATTAGCAATTTaGAGACAGGTGGAAAAGCAT +
Preference number: 4 (lower is better)
Translates to: WFMHCGFVSNKGKVCSILKQLAI*RQVEKH
Trigger: ATGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTT...GAGAATGGAACAAACCTTACCTTTATTGGAGACAAAACCGCAATGCATGAACCA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
3UTR CAA 72 bp ATGTACAATAAAAATGTATGGTGCATCTTGCCAAGTTaGCAATGGTTCATGCATTGCGGTTTTGTCTCCAAT +
Preference number: 4 (lower is better)
Translates to: MYNKNVWCILPS*QWFMHCGFVSN
Trigger: ATTGGAGACAAAACCGCAATGCATGAACCATTGCAAACTTGGCAAGATGCACCATACATTTTTATTGTACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR CCA 90 bp TACAATAAAAATGTATGGTGCATCTTGCCAAGTTTGCAATGGTTCATGCATTGCACAAGAATTTCAGTCTaGATTTCAGTCTGGATTCCA +
Preference number: 4 (lower is better)
Translates to: YNKNVWCILPSLQWFMHCTRISV*ISVWIP
Trigger: TGGAATCCAGACTGAAATCCAGACTGAAATTCTTGT...GCAATGCATGAACCATTGCAAACTTGGCAAGATGCACCATACATTTTTATTGTA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR TCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCTTCAAGAAAGGCATCTaGATGGTTTTGTCTCCAATA +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSFKKGI*MVLSPI
Trigger: TATTGGAGACAAAACCATTCAGATGCCTTTCTTGAA...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
36% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000307216.10
ENST00000568432.1
CDS-3UTR GCA 90 bp CACTTTCAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCCAACTCTACTTCTTCTaGCTTGAAGTTATAGATTTC +
Preference number: 4 (lower is better)
Translates to: HFQNGRIRNSENLLIHKSQLYFF*LEVIDF
Trigger: GAAATCTATAACTTCAAGGCAGAAGAAGTAGAGTTG...GCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTGAAAGTG
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000307216.10
ENST00000568432.1
CDS GCA 90 bp GCGGGATTATCCGGGTCCTGGAAACGTCGCGGAGCTTGTTTGCTGTaGGGCGTAGCGGCCCCTCTCTCAGACAGTCGTCTGTGCGCCGTG +
Preference number: 5 (lower is better)
Translates to: AGLSGSWKRRGACLL*GVAAPLSDSRLCAV
Trigger: CACGGCGCACAGACGACTGTCTGAGAGAGGGGCCGCTACGCCGCACAGCAAACAAGCTCCGCGACGTTTCCAGGACCCGGATAATCCCGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS CCA 90 bp CCGCCTTCTTCCGGCTCTGCTCTAAGGGCGGGATTATCCGGGTCCTaGAAACGTCGCGGAGCTTGTTTGCTGTGCGGCGTAGCGGCCCCT +
Preference number: 5 (lower is better)
Translates to: PPSSGSALRAGLSGS*KRRGACLLCGVAAP
Trigger: AGGGGCCGCTACGCCGCACAGCAAACAAGCTCCGCGACGTTTCCAGGACCCGGATAATCCCGCCCTTAGAGCAGAGCCGGAAGAAGGCGG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS CCA 90 bp CAGGCAACACCTGAAGCCACGCAGCCGCCGCCATCTTCACAGCCGTaGAGTGCCTACCGAAAGCATTTCACCCTCTTCCGGTTCGTCCCG +
Preference number: 5 (lower is better)
Translates to: QATPEATQPPPSSQP*SAYRKHFTLFRFVP
Trigger: CGGGACGAACCGGAAGAGGGTGAAATGCTTTCGGTAGGCACTCCACGGCTGTGAAGATGGCGGCGGCTGCGTGGCTTCAGGTGTTGCCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS-3UTR CAA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTCGTCGCGGAGCTTGTTaGCTGTGCGGCGTAGCGGCC +
Preference number: 5 (lower is better)
Translates to: DTRTVHPKERAAVQGLHARRGAC*LCGVAA
Trigger: GGCCGCTACGCCGCACAGCAAACAAGCTCCGCGACG...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS TCA 90 bp GCCATTTGGACCGGTCGGCAGCAGCTACGGTTGCCGGTCCCGCACTaGAAAACGACAGTGGTGACGGGTGAGCTCCCAGAAGCAGAAGAA +
Preference number: 5 (lower is better)
Translates to: AIWTGRQQLRLPVPH*KTTVVTGELPEAEE
Trigger: TTCTTCTGCTTCTGGGAGCTCACCCGTCACCACTGTCGTTTTTCAGTGCGGGACCGGCAACCGTAGCTGCTGCCGACCGGTCCAAATGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000307216.10
ENST00000389834.9
ENST00000448392.5
ENST00000562946.5
ENST00000569075.5
CDS GCA 90 bp AAAGCATTTCACCCTCTTCCGGTTCGTCCCGCCTTCTTCCGGCTCTaGTCTAAGGGCGGGATTATCCGGGTCCTGGAAACGTCGCGGAGC +
Preference number: 5 (lower is better)
Translates to: KAFHPLPVRPAFFRL*SKGGIIRVLETSRS
Trigger: GCTCCGCGACGTTTCCAGGACCCGGATAATCCCGCCCTTAGAGCAGAGCCGGAAGAAGGCGGGACGAACCGGAAGAGGGTGAAATGCTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS TCA 90 bp GGCAGCAGCTACGGTTGCCGGTCCCGCACTGAAAAACGACAGTGGTaGCGGGTGAGCTCCCAGAAGCAGAAGAATGACAGGCAACACCTG +
Preference number: 5 (lower is better)
Translates to: GSSYGCRSRTEKRQW*RVSSQKQKNDRQHL
Trigger: CAGGTGTTGCCTGTCATTCTTCTGCTTCTGGGAGCTCACCCGTCACCACTGTCGTTTTTCAGTGCGGGACCGGCAACCGTAGCTGCTGCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000307216.10
ENST00000389834.9
ENST00000448392.5
ENST00000562946.5
ENST00000569075.5
CDS-3UTR CAA 90 bp ATTACAGTTCCTCTAGCACGGTGCTCAATCACAGCACTTGGAGCACCTCTCTGCACTCCAAGGCGTGGCTaGACGATGCCATATCCCAGA +
Preference number: 5 (lower is better)
Translates to: ITVPLARCSITALGAPLCTPRRG*TMPYPR
Trigger: TCTGGGATATGGCATCGTCAAGCCACGCCTTGGAGT...GCAGAGAGGTGCTCCAAGTGCTGTGATTGAGCACCGTGCTAGAGGAACTGTAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCATCGGAATGTGCCATTaGGACCGGTCGGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFIGMCH*DRSAAA
Trigger: AGCTGCTGCCGACCGGTCCAAATGGCACATTCCGAT...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAATCGGAATGTGCCATTaGGACCGGTCGGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAIGMCH*DRSAAA
Trigger: AGCTGCTGCCGACCGGTCCAAATGGCACATTCCGAT...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTGCCAAAATAAGCGTGTaGGTGAAATGCCGATACAAA +
Preference number: 5 (lower is better)
Translates to: DTRTVHPKERAAVQGLHAAKISV*VKCRYK
Trigger: TTTGTATCGGCATTTCACCAACACGCTTATTTTGGC...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp GATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAGTCCAGGGCCTCCACGCTAACAACACACTTAAGTaGCATGAACATCCATGTCAG +
Preference number: 5 (lower is better)
Translates to: DTRTVHPKERAAVQGLHANNTLK*HEHPCQ
Trigger: CTGACATGGATGTTCATGCAACTTAAGTGTGTTGTT...AGCGTGGAGGCCCTGGACTGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAGGAGTGTGCACCACATaGCCAGCAATGGGATGTGTC +
Preference number: 5 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPAGVCTT*PAMGCV
Trigger: GACACATCCCATTGCTGGCAATGTGGTGCACACTCC...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCCTGCAATGCCACCCTaGGAGGCTTACAAAACAGTA +
Preference number: 5 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFPAMPP*EAYKTV
Trigger: TACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATGAAACGTCGCGGAGCTaGTTTGCTGTGCGGCGTAGC +
Preference number: 5 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNETSRS*FAVRRS
Trigger: GCTACGCCGCACAGCAAACAAGCTCCGCGACGTTTC...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS-3UTR CAA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGCCTGCAATGCCACCCTaGGAGGCTTACAAAACAGTA +
Preference number: 5 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVPAMPP*EAYKTV
Trigger: TACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS CCA 90 bp AGCAGAGTAAACAGAAGAGTCCAAGAACCTCTGGTTGTTTGCAGATaGTCGCCAGAGAACCATGATGACAAAGAGGATCATGGAGAACAG +
Preference number: 5 (lower is better)
Translates to: SRVNRRVQEPLVVCR*SPENHDDKEDHGEQ
Trigger: CTGTTCTCCATGATCCTCTTTGTCATCATGGTTCTCTGGCGACCATCTGCAAACAACCAGAGGTTCTTGGACTCTTCTGTTTACTCTGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564329.1
CDS-3UTR CAA 90 bp AGATTAAGCAGTACTAACCCCAGTAACTCTGAGGACCCCTTCCATGCCAGAGAATGCATCTTGCCAAGTTaGCAATGGTTCATGCATTGC +
Preference number: 5 (lower is better)
Translates to: RLSSTNPSNSEDPFHARECILPS*QWFMHC
Trigger: GCAATGCATGAACCATTGCAAACTTGGCAAGATGCA...TTCTCTGGCATGGAAGGGGTCCTCAGAGTTACTGGGGTTAGTACTGCTTAATCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR CAA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATACTCCAAGGCGTGGCTaGACGATGCCATATCCCAGA +
Preference number: 5 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNTPRRG*TMPYPR
Trigger: TCTGGGATATGGCATCGTCAAGCCACGCCTTGGAGT...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp TGGTTCATGCATTGCGGTTTTGTCTCCAATAAAGGTAAGGTTTGTTCCATTCTCACTCCAAGGCGTGGCTaGACGATGCCATATCCCAGA +
Preference number: 5 (lower is better)
Translates to: WFMHCGFVSNKGKVCSILTPRRG*TMPYPR
Trigger: TCTGGGATATGGCATCGTCAAGCCACGCCTTGGAGT...GAGAATGGAACAAACCTTACCTTTATTGGAGACAAAACCGCAATGCATGAACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR CAA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCACAAACCTCTGGTTGTTaGCAGATGGTCGCCAGAGAA +
Preference number: 5 (lower is better)
Translates to: VSKPIPDTRTVHPKERAAQTSGC*QMVARE
Trigger: TTCTCTGGCGACCATCTGCAAACAACCAGAGGTTTG...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCAGATCAGGATGTCATaGCTTCCTTTAATCCCATGG +
Preference number: 5 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFQIRMS*LPLIPW
Trigger: CCATGGGATTAAAGGAAGCAATGACATCCTGATCTG...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS GCA 90 bp CATGTTAGCAGAGTAAACAGAAGAGTCCAAGAACCTCTGGTTGTTTaGAGATGGTCGCCAGAGAACCATGATGACAAAGAGGATCATGGA +
Preference number: 5 (lower is better)
Translates to: HVSRVNRRVQEPLVV*RWSPENHDDKEDHG
Trigger: TCCATGATCCTCTTTGTCATCATGGTTCTCTGGCGACCATCTGCAAACAACCAGAGGTTCTTGGACTCTTCTGTTTACTCTGCTAACATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564329.1
CDS-3UTR CAA 90 bp TACAATAAAAATGTATGGTGCATCTTGCCAAGTTTGCAATGGTTCATGCATTGCATCGGAATGTGCCATTaGGACCGGTCGGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: YNKNVWCILPSLQWFMHCIGMCH*DRSAAA
Trigger: AGCTGCTGCCGACCGGTCCAAATGGCACATTCCGAT...GCAATGCATGAACCATTGCAAACTTGGCAAGATGCACCATACATTTTTATTGTA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR CAA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCATCTTGCCAAGTTaGCAATGGTTCATGCATTGC +
Preference number: 5 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVCILPS*QWFMHC
Trigger: GCAATGCATGAACCATTGCAAACTTGGCAAGATGCA...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp AGATTAAGCAGTACTAACCCCAGTAACTCTGAGGACCCCTTCCATGCCAGAGAAAATGTATGGTGCATCTaGCCAAGTTTGCAATGGTTC +
Preference number: 5 (lower is better)
Translates to: RLSSTNPSNSEDPFHARENVWCI*PSLQWF
Trigger: GAACCATTGCAAACTTGGCAAGATGCACCATACATT...TTCTCTGGCATGGAAGGGGTCCTCAGAGTTACTGGGGTTAGTACTGCTTAATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR CAA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAAGGCAAACCTCTGGTaGTTTGCAGATGGTCGCCAG +
Preference number: 5 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSKANLW*FADGRQ
Trigger: CTGGCGACCATCTGCAAACAACCAGAGGTTTGCCTT...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTGCAAGATGTAACCTaGACTTCCCAGGAAAATGAA +
Preference number: 5 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFLQDVT*TSQENE
Trigger: TTCATTTTCCTGGGAAGTCAAGGTTACATCTTGCAG...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp CAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCAACGAAATCGGAATGTGCCATTaGGACCGGTCGGCAGCAGCT +
Preference number: 5 (lower is better)
Translates to: QNGRIRNSENLLIHKSNEIGMCH*DRSAAA
Trigger: AGCTGCTGCCGACCGGTCCAAATGGCACATTCCGAT...TTCGTTGCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR CAA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTTGCATCTTGCCAAGTTaGCAATGGTTCATGCATTGC +
Preference number: 5 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFCILPS*QWFMHC
Trigger: GCAATGCATGAACCATTGCAAACTTGGCAAGATGCA...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATCAAACCTCTGGTTGTTaGCAGATGGTCGCCAGAGAA +
Preference number: 5 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNQTSGC*QMVARE
Trigger: TTCTCTGGCGACCATCTGCAAACAACCAGAGGTTTG...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS TCA 90 bp ACAACTCTCCGTTTGTACATCAAGTTTACATCTCAAGTCAGGCACTaGAAGTTCTGTTTTTCTGATGAGAAGCCGCTCCACCACTCCTTT +
Preference number: 5 (lower is better)
Translates to: TTLRLYIKFTSQVRH*KFCFSDEKPLHHSF
Trigger: AAAGGAGTGGTGGAGCGGCTTCTCATCAGAAAAACAGAACTTTCAGTGCCTGACTTGAGATGTAAACTTGATGTACAAACGGAGAGTTGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568432.1
CDS-3UTR CAA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTTCATGCATTGCGGTTTaGTCTCCAATAAAGGTAAGG +
Preference number: 5 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFSCIAV*SPIKVR
Trigger: CCTTACCTTTATTGGAGACAAAACCGCAATGCATGA...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCAAATGTATGGTGCATCTaGCCAAGTTTGCAATGGTTC +
Preference number: 5 (lower is better)
Translates to: VSKPIPDTRTVHPKERAANVWCI*PSLQWF
Trigger: GAACCATTGCAAACTTGGCAAGATGCACCATACATT...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp CCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCCTTTAATGTATGGTGCATCTaGCCAAGTTTGCAATGGTTC +
Preference number: 5 (lower is better)
Translates to: PTPMPKDQGTDQDVIASFNVWCI*PSLQWF
Trigger: GAACCATTGCAAACTTGGCAAGATGCACCATACATT...AAAGGAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp CCTGCAATGCCACCCTTGGAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGAACAACACACTTAAGTaGCATGAACATCCATGTCAG +
Preference number: 5 (lower is better)
Translates to: PAMPPLEAYKTVVKSFGVNNTLK*HEHPCQ
Trigger: CTGACATGGATGTTCATGCAACTTAAGTGTGTTGTT...CACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTCCAAGGGTGGCATTGCAGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp CTCGCCAACTCCAATGCCCAAAGATCAAGGAACAGATCAGGATGTCATTGCTTCAAAAATTACAGGCAGTaGCTCCTGGAGATTACATAT +
Preference number: 5 (lower is better)
Translates to: LANSNAQRSRNRSGCHCFKNYRQ*LLEITY
Trigger: ATATGTAATCTCCAGGAGCAACTGCCTGTAATTTTT...GAAGCAATGACATCCTGATCTGTTCCTTGATCTTTGGGCATTGGAGTTGGCGAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp GTCTCTAAACCAATACCAGATACCAGAACAGTCCATCCTAAAGAACGAGCAGCACTGCAAGATGTAACCTaGACTTCCCAGGAAAATGAA +
Preference number: 5 (lower is better)
Translates to: VSKPIPDTRTVHPKERAALQDVT*TSQENE
Trigger: TTCATTTTCCTGGGAAGTCAAGGTTACATCTTGCAG...TGCTGCTCGTTCTTTAGGATGGACTGTTCTGGTATCTGGTATTGGTTTAGAGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp AGATTAAGCAGTACTAACCCCAGTAACTCTGAGGACCCCTTCCATGCCAGAGAAAAAACAATTAGCAATTaGGAGACAGGTGGAAAAGCA +
Preference number: 5 (lower is better)
Translates to: RLSSTNPSNSEDPFHAREKTISN*ETGGKA
Trigger: TGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTTT...TTCTCTGGCATGGAAGGGGTCCTCAGAGTTACTGGGGTTAGTACTGCTTAATCT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR CAA 90 bp GAGGCTTACAAAACAGTAGTTAAAAGTTTCGGAGTGTGCACCACATTGCCAGCAATTCCTTACTCCATTTaGGACCTTTCAAAGTGTGTG +
Preference number: 5 (lower is better)
Translates to: EAYKTVVKSFGVCTTLPAIPYSI*DLSKCV
Trigger: CACACACTTTGAAAGGTCCAAAATGGAGTAAGGAAT...TGCTGGCAATGTGGTGCACACTCCGAAACTTTTAACTACTGTTTTGTAAGCCTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATCAGATCAGGATGTCATaGCTTCCTTTAATCCCATGG +
Preference number: 5 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNQIRMS*LPLIPW
Trigger: CCATGGGATTAAAGGAAGCAATGACATCCTGATCTG...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp CAGAATGGCAGAATAAGAAACTCTGAAAATCTACTCATCCATAAAAGCAACGAACAAAGTTTCACCACATaGGCCAAGCTGGTCTCGAAC +
Preference number: 5 (lower is better)
Translates to: QNGRIRNSENLLIHKSNEQSFTT*AKLVSN
Trigger: GTTCGAGACCAGCTTGGCCAATGTGGTGAAACTTTG...TTCGTTGCTTTTATGGATGAGTAGATTTTCAGAGTTTCTTATTCTGCCATTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000307216.10
CDS-3UTR CAA 90 bp CAGGACCTGTTTCCTTTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTTCATGCATTGCGGTTTaGTCTCCAATAAAGGTAAGG +
Preference number: 5 (lower is better)
Translates to: QDLFPLYKLQLLKHYSSSSCIAV*SPIKVR
Trigger: CCTTACCTTTATTGGAGACAAAACCGCAATGCATGA...AGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAAAGGAAACAGGTCCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp TTGGGAGGAGGAACTAAAACAATTAGCAATTTGGAGACAGGTGGAAAAGCATTCTCATGCATTGCGGTTTaGTCTCCAATAAAGGTAAGG +
Preference number: 5 (lower is better)
Translates to: LGGGTKTISNLETGGKAFSCIAV*SPIKVR
Trigger: CCTTACCTTTATTGGAGACAAAACCGCAATGCATGA...GAATGCTTTTCCACCTGTCTCCAAATTGCTAATTGTTTTAGTTCCTCCTCCCAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS-3UTR CAA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATGCCAAAATAAGCGTGTaGGTGAAATGCCGATACAAA +
Preference number: 5 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNAKISV*VKCRYK
Trigger: TTTGTATCGGCATTTCACCAACACGCTTATTTTGGC...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp TTGTATAAGCTACAACTTCTGAAGCATTACAGTTCCTCTAGCACGGTGCTCAATATTCCTTACTCCATTTaGGACCTTTCAAAGTGTGTG +
Preference number: 5 (lower is better)
Translates to: LYKLQLLKHYSSSSTVLNIPYSI*DLSKCV
Trigger: CACACACTTTGAAAGGTCCAAAATGGAGTAAGGAAT...ATTGAGCACCGTGCTAGAGGAACTGTAATGCTTCAGAAGTTGTAGCTTATACAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000389834.9
ENST00000448392.5
CDS-3UTR CAA 90 bp TACAATAAAAATGTATGGTGCATCTTGCCAAGTTTGCAATGGTTCATGCATTGCATGCAAGTCTACTGCTaGGGAGGAGGAACTAAAACA +
Preference number: 5 (lower is better)
Translates to: YNKNVWCILPSLQWFMHCMQVYC*GGGTKT
Trigger: TGTTTTAGTTCCTCCTCCCAAGCAGTAGACTTGCAT...GCAATGCATGAACCATTGCAAACTTGGCAAGATGCACCATACATTTTTATTGTA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000569075.5
CDS GCA 72 bp TCCGGGTCCTGGAAACGTCGCGGAGCTTGTTTGCTGTaGGGCGTAGCGGCCCCTCTCTCAGACAGTCGTCTG +
Preference number: 6 (lower is better)
Translates to: SGSWKRRGACLL*GVAAPLSDSRL
Trigger: CAGACGACTGTCTGAGAGAGGGGCCGCTACGCCGCACAGCAAACAAGCTCCGCGACGTTTCCAGGACCCGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS CAA 72 bp GGCGGGATTATCCGGGTCCTGGAAACGTCGCGGAGCTaGTTTGCTGTGCGGCGTAGCGGCCCCTCTCTCAGA +
Preference number: 6 (lower is better)
Translates to: GGIIRVLETSRS*FAVRRSGPSLR
Trigger: TCTGAGAGAGGGGCCGCTACGCCGCACAGCAAACAAGCTCCGCGACGTTTCCAGGACCCGGATAATCCCGCC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS CAA 90 bp CTAAGGGCGGGATTATCCGGGTCCTGGAAACGTCGCGGAGCTTGTTaGCTGTGCGGCGTAGCGGCCCCTCTCTCAGACAGTCGTCTGTGC +
Preference number: 6 (lower is better)
Translates to: LRAGLSGSWKRRGAC*LCGVAAPLSDSRLC
Trigger: GCACAGACGACTGTCTGAGAGAGGGGCCGCTACGCCGCACAGCAAACAAGCTCCGCGACGTTTCCAGGACCCGGATAATCCCGCCCTTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS TCA 72 bp ACCGGTCGGCAGCAGCTACGGTTGCCGGTCCCGCACTaGAAAACGACAGTGGTGACGGGTGAGCTCCCAGAA +
Preference number: 6 (lower is better)
Translates to: TGRQQLRLPVPH*KTTVVTGELPE
Trigger: TTCTGGGAGCTCACCCGTCACCACTGTCGTTTTTCAGTGCGGGACCGGCAACCGTAGCTGCTGCCGACCGGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENST00000307216.10
ENST00000389834.9
ENST00000448392.5
ENST00000562946.5
ENST00000569075.5
CDS GCA 72 bp CACCCTCTTCCGGTTCGTCCCGCCTTCTTCCGGCTCTaGTCTAAGGGCGGGATTATCCGGGTCCTGGAAACG +
Preference number: 6 (lower is better)
Translates to: HPLPVRPAFFRL*SKGGIIRVLET
Trigger: CGTTTCCAGGACCCGGATAATCCCGCCCTTAGAGCAGAGCCGGAAGAAGGCGGGACGAACCGGAAGAGGGTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS CAA 90 bp TGCTCTAAGGGCGGGATTATCCGGGTCCTGGAAACGTCGCGGAGCTaGTTTGCTGTGCGGCGTAGCGGCCCCTCTCTCAGACAGTCGTCT +
Preference number: 6 (lower is better)
Translates to: CSKGGIIRVLETSRS*FAVRRSGPSLRQSS
Trigger: AGACGACTGTCTGAGAGAGGGGCCGCTACGCCGCACAGCAAACAAGCTCCGCGACGTTTCCAGGACCCGGATAATCCCGCCCTTAGAGCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS GCA 72 bp AGCCACGCAGCCGCCGCCATCTTCACAGCCGTGGAGTaGCTACCGAAAGCATTTCACCCTCTTCCGGTTCGT +
Preference number: 6 (lower is better)
Translates to: SHAAAAIFTAVE*LPKAFHPLPVR
Trigger: ACGAACCGGAAGAGGGTGAAATGCTTTCGGTAGGCACTCCACGGCTGTGAAGATGGCGGCGGCTGCGTGGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS CCA 72 bp TCCGGCTCTGCTCTAAGGGCGGGATTATCCGGGTCCTaGAAACGTCGCGGAGCTTGTTTGCTGTGCGGCGTA +
Preference number: 6 (lower is better)
Translates to: SGSALRAGLSGS*KRRGACLLCGV
Trigger: TACGCCGCACAGCAAACAAGCTCCGCGACGTTTCCAGGACCCGGATAATCCCGCCCTTAGAGCAGAGCCGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS CCA 72 bp GGTTCTCCATCAACGACGGTATCGGAATGTGCCATTTaGACCGGTCGGCAGCAGCTACGGTTGCCGGTCCCG +
Preference number: 6 (lower is better)
Translates to: GSPSTTVSECAI*TGRQQLRLPVP
Trigger: CGGGACCGGCAACCGTAGCTGCTGCCGACCGGTCCAAATGGCACATTCCGATACCGTCGTTGATGGAGAACC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000448392.5
ENST00000569075.5
CDS CAA 72 bp GGATTATCCGGGTCCTGGAAACGTCGCGGAGCTTGTTaGCTGTGCGGCGTAGCGGCCCCTCTCTCAGACAGT +
Preference number: 6 (lower is better)
Translates to: GLSGSWKRRGAC*LCGVAAPLSDS
Trigger: ACTGTCTGAGAGAGGGGCCGCTACGCCGCACAGCAAACAAGCTCCGCGACGTTTCCAGGACCCGGATAATCC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000448392.5
CDS CAA 72 bp AGGTTCTCCATCAACGACGGTATCGGAATGTGCCATTaGGACCGGTCGGCAGCAGCTACGGTTGCCGGTCCC +
Preference number: 6 (lower is better)
Translates to: RFSINDGIGMCH*DRSAAATVAGP
Trigger: GGGACCGGCAACCGTAGCTGCTGCCGACCGGTCCAAATGGCACATTCCGATACCGTCGTTGATGGAGAACCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000448392.5
ENST00000569075.5
CDS TCA 72 bp GCCGGTCCCGCACTGAAAAACGACAGTGGTGACGGGTaGGCTCCCAGAAGCAGAAGAATGACAGGCAACACC +
Preference number: 6 (lower is better)
Translates to: AGPALKNDSGDG*APRSRRMTGNT
Trigger: GGTGTTGCCTGTCATTCTTCTGCTTCTGGGAGCTCACCCGTCACCACTGTCGTTTTTCAGTGCGGGACCGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000307216.10
ENST00000389834.9
ENST00000448392.5
ENST00000562946.5
ENST00000569075.5
CDS TCA 72 bp TACGGTTGCCGGTCCCGCACTGAAAAACGACAGTGGTaGCGGGTGAGCTCCCAGAAGCAGAAGAATGACAGG +
Preference number: 6 (lower is better)
Translates to: YGCRSRTEKRQW*RVSSQKQKNDR
Trigger: CCTGTCATTCTTCTGCTTCTGGGAGCTCACCCGTCACCACTGTCGTTTTTCAGTGCGGGACCGGCAACCGTA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENST00000307216.10
ENST00000389834.9
ENST00000448392.5
ENST00000562946.5
ENST00000569075.5
CDS GCA 72 bp GTCACAAGGTTCTCCATCAACGACGGTATCGGAATGTaGCATTTGGACCGGTCGGCAGCAGCTACGGTTGCC +
Preference number: 6 (lower is better)
Translates to: VTRFSINDGIGM*HLDRSAAATVA
Trigger: GGCAACCGTAGCTGCTGCCGACCGGTCCAAATGGCACATTCCGATACCGTCGTTGATGGAGAACCTTGTGAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000448392.5
ENST00000569075.5
CDS CCA 72 bp AATAATTTTTCCCCGACGGTATCGGAATGTGCCATTTaGACCGGTCGGCAGCAGCTACGGTTGCCGGTCCCG +
Preference number: 6 (lower is better)
Translates to: NNFSPTVSECAI*TGRQQLRLPVP
Trigger: CGGGACCGGCAACCGTAGCTGCTGCCGACCGGTCCAAATGGCACATTCCGATACCGTCGGGGAAAAATTATT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000307216.10
ENST00000389834.9
ENST00000562946.5
CDS GCA 72 bp AGAGTAAACAGAAGAGTCCAAGAACCTCTGGTTGTTTaGAGATGGTCGCCAGAGAACCATGATGACAAAGAG +
Preference number: 6 (lower is better)
Translates to: RVNRRVQEPLVV*RWSPENHDDKE
Trigger: CTCTTTGTCATCATGGTTCTCTGGCGACCATCTGCAAACAACCAGAGGTTCTTGGACTCTTCTGTTTACTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000564329.1
CDS TCA 72 bp CCATTCCTTACTCCATTTTGGACCTTTCAAAGTGTGTaGTCATTCGTTCCTCATCTGAATCCAGAAGGGCTG +
Preference number: 6 (lower is better)
Translates to: PFLTPFWTFQSV*SFVPHLNPEGL
Trigger: CAGCCCTTCTGGATTCAGATGAGGAACGAATGATCACACACTTTGAAAGGTCCAAAATGGAGTAAGGAATGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000389834.9
ENST00000448392.5
ENST00000568067.1
CDS TCA 72 bp CGTTTGTACATCAAGTTTACATCTCAAGTCAGGCACTaGAAGTTCTGTTTTTCTGATGAGAAGCCGCTCCAC +
Preference number: 6 (lower is better)
Translates to: RLYIKFTSQVRH*KFCFSDEKPLH
Trigger: GTGGAGCGGCTTCTCATCAGAAAAACAGAACTTTCAGTGCCTGACTTGAGATGTAAACTTGATGTACAAACG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000568432.1
CDS TCA 72 bp ATTTTTCCCATCAAGTTTACATCTCAAGTCAGGCACTaGAAGTTCTGTTTTTCTGATGAGAAGCCGCTCCAC +
Preference number: 6 (lower is better)
Translates to: IFPIKFTSQVRH*KFCFSDEKPLH
Trigger: GTGGAGCGGCTTCTCATCAGAAAAACAGAACTTTCAGTGCCTGACTTGAGATGTAAACTTGATGGGAAAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000568400.5