Pregenerated sensors for TMED6 (Homo sapiens)
Ensembl gene IDs: ENSG00000157315Ensembl transcript IDs: ENST00000288025.4, ENST00000568748.1
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR CCA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTCCACGGAAGAGTGGCTaGTCCCCAGAGCCACTTAGA | + |
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Preference number: 4 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLPRKSG*SPEPLR Trigger: TCTAAGTGGCTCTGGGGACCAGCCACTCTTCCGTGG...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR GCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGCCGTGGCAGCAACATaGCGGTCATGTGACATCCCC | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPAVAAT*RSCDIP Trigger: GGGGATGTCACATGACCGGCATGTTGCTGCCACGGC...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTAGAGGTTCTGTCTTCTaGCTCCTGGCAGACGTCACT | + |
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Preference number: 4 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLRGSVF*LLADVT Trigger: AGTGACGTCTGCCAGGAGCCAGAAGACAGAACCTCT...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTGTAGAGAAGTTAATCTaGCCCCGAACACCCTGGGAG | + |
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Preference number: 4 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLVEKLI*PRTPWE Trigger: CTCCCAGGGTGTTCGGGGCCAGATTAACTTCTCTAC...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR TCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAAACATGCCGGTCATGTaGCATCCCCACTGTCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPNMPVM*HPHCPL Trigger: CAGCGGACAGTGGGGATGTCACATGACCGGCATGTT...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR GCA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTGTCTGGTGGGCAAATTaGCAAAAGCATTCCGTGCCT | + |
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Preference number: 4 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLVWWAN*QKHSVP Trigger: AGGCACGGAATGCTTTTGGCAATTTGCCCACCAGAC...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR GCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCATCCCTGTGGGTTATGTaGCGTGGCAGCAACATGCCG | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPSLWVM*RGSNMP Trigger: CGGCATGTTGCTGCCACGGCACATAACCCACAGGGA...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTCTGTCTTCTGGCTCCTaGCAGACGTCACTAGATTCA | + |
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Preference number: 4 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLLSSGS*QTSLDS Trigger: TGAATCTAGTGACGTCTGCCAGGAGCCAGAAGACAG...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR GCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAAGAGCAAAGGGGACATaGCGCTTTCTGGAGCCTCCT | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPRAKGT*RFLEPP Trigger: AGGAGGCTCCAGAAAGCGGCATGTCCCCTTTGCTCT...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR GCA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTTCTGCACCTTTTGTGTaGCGTCCTCAATTGCATCCA | + |
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Preference number: 4 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLSAPFV*RPQLHP Trigger: TGGATGCAATTGAGGACGGCACACAAAAGGTGCAGA...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGTGGGTTATGTGCCGTaGCAGCAACATGCCGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPVGYVP*QQHAGH Trigger: ATGACCGGCATGTTGCTGCCACGGCACATAACCCAC...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR TCA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTCTCCTGGAGGTATCATaGTGGCAAAGTCATATCGAT | + |
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Preference number: 4 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLLLEVS*WQSHID Trigger: ATCGATATGACTTTGCCATCATGATACCTCCAGGAG...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR GCA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTTGTGCCGTCCTCAATTaGATCCAGAGTATCATTCAG | + |
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Preference number: 4 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLCAVLN*IQSIIQ Trigger: CTGAATGATACTCTGGATGCAATTGAGGACGGCACA...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCATGGCCCCGAACACCCTaGGAGGTGTCTATGAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPWPRTP*EVSMRN Trigger: ATTTCTCATAGACACCTCCCAGGGTGTTCGGGGCCA...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR TCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCACCTGGGAGGTGTCTATaGGAAATCCCTGTGGGTTAT | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPPGRCL*EIPVGY Trigger: ATAACCCACAGGGATTTCTCATAGACACCTCCCAGG...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGCATTCCGTGCCTCCTaGAGGTATCATGATGGCAAA | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPAFRAS*RYHDGK Trigger: TTTGCCATCATGATACCTCCAGGAGGCACGGAATGC...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCATATGAGAAATCCCTGTaGGTTATGTGCCGTGGCAGC | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPYEKSL*VMCRGS Trigger: GCTGCCACGGCACATAACCCACAGGGATTTCTCATA...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR TCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAAGAAGACCCCAAAGTTaGGGTACACTTGCACAGAAC | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPRRPQS*GTLAQN Trigger: GTTCTGTGCAAGTGTACCTCAACTTTGGGGTCTTCT...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAATAATAACAAGGCTCTaGGCTGTCGACCACCAGTTC | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPIITRL*AVDHQF Trigger: GAACTGGTGGTCGACAGCCCAGAGCCTTGTTATTAT...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTTGTATCTGTAGTTGTTaGAACATTGAAGAGACGCTT | + |
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Preference number: 4 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLCICSC*NIEETL Trigger: AAGCGTCTCTTCAATGTTCCAACAACTACAGATACA...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR TCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGCTGAACCTCGTAACTaGAATAGAAGTATCCAGTCT | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPAEPRN*NRSIQS Trigger: AGACTGGATACTTCTATTTCAGTTACGAGGTTCAGC...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR GCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAAGAAAACAGCCAGGGTaGTATAGTCACCTTAGCTTA | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPRKQPG*YSHLSL Trigger: TAAGCTAAGGTGACTATAGCACCCTGGCTGTTTTCT...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAAAGTATCCAGTCTGGTaGGCAAATTGCCAAAAGCAT | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPKYPVW*ANCQKH Trigger: ATGCTTTTGGCAATTTGCCCACCAGACTGGATACTT...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCACTTAGCTTAGCATCTTaGCTTCTTTGTATCTGTAGT | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPLSLAS*LLCICS Trigger: ACTACAGATACAAAGAAGCCAAGATGCTAAGCTAAG...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR GCA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCATTCAAGAAATACAGTTaGAGGATCCCAGAAAGAATA | + |
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Preference number: 4 (lower is better) Translates to: LSHNITKLIRLSPRRKQPFKKYS*RIPERI Trigger: TATTCTTTCTGGGATCCTGCAACTGTATTTCTTGAA...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS TCA 90 bp | GGTGGGCAAATTGCCAAAAGCATTCCGTGCCTCCTGGAGGTATCATaGTGGCAAAGTCATATCGATCAGCTCCACGGAAGAGTGGCTGGT | + |
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Preference number: 5 (lower is better) Translates to: GGQIAKSIPCLLEVS*WQSHIDQLHGRVAG Trigger: ACCAGCCACTCTTCCGTGGAGCTGATCGATATGACTTTGCCATCATGATACCTCCAGGAGGCACGGAATGCTTTTGGCAATTTGCCCACC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS TCA 90 bp | AAATCCCTGTGGGTTATGTGCCGTGGCAGCAACATGCCGGTCATGTaGCATCCCCACTGTCCGCTGAACCTCGTAACTGAAATAGAAGTA | + |
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Preference number: 5 (lower is better) Translates to: KSLWVMCRGSNMPVM*HPHCPLNLVTEIEV Trigger: TACTTCTATTTCAGTTACGAGGTTCAGCGGACAGTGGGGATGTCACATGACCGGCATGTTGCTGCCACGGCACATAACCCACAGGGATTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CAA 90 bp | AAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTGCTATAGTCACCTTATTGTTCTGCACCTTTaGTGTGCCGTCCTCAATTGC | + |
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Preference number: 5 (lower is better) Translates to: KLIRLSPRRKQPGCYSHLIVLHL*CAVLNC Trigger: GCAATTGAGGACGGCACACAAAAGGTGCAGAACAAT...AAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS TCA 90 bp | AACAAGGCTCTGGGCTGTCGACCACCAGTTCACGTAGTTATAGTTTaGTTGGATAAGGAAAAAGTCAGCCATTTTCCTCATCCGGGCAAA | + |
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Preference number: 5 (lower is better) Translates to: NKALGCRPPVHVVIV*LDKEKVSHFPHPGK Trigger: TTTGCCCGGATGAGGAAAATGGCTGACTTTTTCCTTATCCAATCAAACTATAACTACGTGAACTGGTGGTCGACAGCCCAGAGCCTTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000288025.4 ENST00000568748.1 |
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| CDS TCA 90 bp | TCTGTTTGTGATCAGTCTCAGGCCCCTCATAGAAGACCCCAAAGTTaGGGTACACTTGCACAGAACCGAAGTGATTATGCTGATTACTTA | + |
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Preference number: 5 (lower is better) Translates to: SVCDQSQAPHRRPQS*GTLAQNRSDYADYL Trigger: TAAGTAATCAGCATAATCACTTCGGTTCTGTGCAAGTGTACCTCAACTTTGGGGTCTTCTATGAGGGGCCTGAGACTGATCACAAACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000288025.4 ENST00000568748.1 |
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| CDS-3UTR CAA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGTGTGCCGTCCTCAATaGCATCCAGAGTATCATTCA | + |
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Preference number: 5 (lower is better) Translates to: LSHNITKLIRLSPRRKQPVCRPQ*HPEYHS Trigger: TGAATGATACTCTGGATGCAATTGAGGACGGCACAC...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS GCA 90 bp | TCTGTAGTTGTTGGAACATTGAAGAGACGCTTCAAGAAATACAGTTaGAGGATCCCAGAAAGAATAATAACAAGGCTCTGGGCTGTCGAC | + |
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Preference number: 5 (lower is better) Translates to: SVVVGTLKRRFKKYS*RIPERIITRLWAVD Trigger: GTCGACAGCCCAGAGCCTTGTTATTATTCTTTCTGGGATCCTGCAACTGTATTTCTTGAAGCGTCTCTTCAATGTTCCAACAACTACAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS GCA 90 bp | ATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTaGTATAGTCACCTTAGCTTAGCATCTTGGCTTCTTTGTATCTGT | + |
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Preference number: 5 (lower is better) Translates to: ITKLIRLSPRRKQPG*YSHLSLASWLLCIC Trigger: ACAGATACAAAGAAGCCAAGATGCTAAGCTAAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CAA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAAAAGTTGAGGTACACTaGCACAGAACCGAAGTGATT | + |
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Preference number: 5 (lower is better) Translates to: LSHNITKLIRLSPRRKQPKVEVH*HRTEVI Trigger: AATCACTTCGGTTCTGTGCAAGTGTACCTCAACTTT...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CAA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCACTTCAAGAAATACAGTaGCAGGATCCCAGAAAGAAT | + |
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Preference number: 5 (lower is better) Translates to: LSHNITKLIRLSPRRKQPLQEIQ*QDPRKN Trigger: ATTCTTTCTGGGATCCTGCAACTGTATTTCTTGAAG...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS-3UTR CAA 90 bp | TTGTCCCATAACATTACAAAGCTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGTAGTTGTTGGAACATaGAAGAGACGCTTCAAGAAA | + |
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Preference number: 5 (lower is better) Translates to: LSHNITKLIRLSPRRKQPVVVGT*KRRFKK Trigger: TTTCTTGAAGCGTCTCTTCAATGTTCCAACAACTAC...TGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAGCTTTGTAATGTTATGGGACAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS CCA 72 bp | GGCTGGTCCCCAGAGCCACTTAGAGGTTCTGTCTTCTaGCTCCTGGCAGACGTCACTAGATTCAGAACGACC | + |
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Preference number: 6 (lower is better) Translates to: GWSPEPLRGSVF*LLADVTRFRTT Trigger: GGTCGTTCTGAATCTAGTGACGTCTGCCAGGAGCCAGAAGACAGAACCTCTAAGTGGCTCTGGGGACCAGCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS TCA 72 bp | TGGGTTATGTGCCGTGGCAGCAACATGCCGGTCATGTaGCATCCCCACTGTCCGCTGAACCTCGTAACTGAA | + |
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Preference number: 6 (lower is better) Translates to: WVMCRGSNMPVM*HPHCPLNLVTE Trigger: TTCAGTTACGAGGTTCAGCGGACAGTGGGGATGTCACATGACCGGCATGTTGCTGCCACGGCACATAACCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS CCA 72 bp | GCAAAGTCATATCGATCAGCTCCACGGAAGAGTGGCTaGTCCCCAGAGCCACTTAGAGGTTCTGTCTTCTGG | + |
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Preference number: 6 (lower is better) Translates to: AKSYRSAPRKSG*SPEPLRGSVFW Trigger: CCAGAAGACAGAACCTCTAAGTGGCTCTGGGGACCAGCCACTCTTCCGTGGAGCTGATCGATATGACTTTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS CCA 72 bp | CTGGTGGGCAAATTGCCAAAAGCATTCCGTGCCTCCTaGAGGTATCATGATGGCAAAGTCATATCGATCAGC | + |
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Preference number: 6 (lower is better) Translates to: LVGKLPKAFRAS*RYHDGKVISIS Trigger: GCTGATCGATATGACTTTGCCATCATGATACCTCCAGGAGGCACGGAATGCTTTTGGCAATTTGCCCACCAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS CCA 72 bp | TCTTGGGTAGAGAAGTTAATCTGGCCCCGAACACCCTaGGAGGTGTCTATGAGAAATCCCTGTGGGTTATGT | + |
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Preference number: 6 (lower is better) Translates to: SWVEKLIWPRTP*EVSMRNPCGLC Trigger: ACATAACCCACAGGGATTTCTCATAGACACCTCCCAGGGTGTTCGGGGCCAGATTAACTTCTCTACCCAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS TCA 72 bp | ATTGCCAAAAGCATTCCGTGCCTCCTGGAGGTATCATaGTGGCAAAGTCATATCGATCAGCTCCACGGAAGA | + |
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Preference number: 6 (lower is better) Translates to: IAKSIPCLLEVS*WQSHIDQLHGR Trigger: TCTTCCGTGGAGCTGATCGATATGACTTTGCCATCATGATACCTCCAGGAGGCACGGAATGCTTTTGGCAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS TCA 72 bp | GATCAGTCTCAGGCCCCTCATAGAAGACCCCAAAGTTaGGGTACACTTGCACAGAACCGAAGTGATTATGCT | + |
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Preference number: 6 (lower is better) Translates to: DQSQAPHRRPQS*GTLAQNRSDYA Trigger: AGCATAATCACTTCGGTTCTGTGCAAGTGTACCTCAACTTTGGGGTCTTCTATGAGGGGCCTGAGACTGATC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000288025.4 ENST00000568748.1 |
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| CDS GCA 72 bp | CTGATTCGACTAAGCCCCAGAAGAAAACAGCCAGGGTaGTATAGTCACCTTAGCTTAGCATCTTGGCTTCTT | + |
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Preference number: 6 (lower is better) Translates to: LIRLSPRRKQPG*YSHLSLASWLL Trigger: AAGAAGCCAAGATGCTAAGCTAAGGTGACTATAGCACCCTGGCTGTTTTCTTCTGGGGCTTAGTCGAATCAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS TCA 72 bp | CTGGGCTGTCGACCACCAGTTCACGTAGTTATAGTTTaGTTGGATAAGGAAAAAGTCAGCCATTTTCCTCAT | + |
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Preference number: 6 (lower is better) Translates to: LGCRPPVHVVIV*LDKEKVSHFPH Trigger: ATGAGGAAAATGGCTGACTTTTTCCTTATCCAATCAAACTATAACTACGTGAACTGGTGGTCGACAGCCCAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000288025.4 ENST00000568748.1 |
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| CDS CCA 72 bp | AAGTCTTTGGTCTCCTCCCCTTTGTTAAGGATTCCCTaGAGGTATCTGTCCTCTAGTTTTGGAATTCTACTA | + |
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Preference number: 6 (lower is better) Translates to: KSLVSSPLLRIP*RYLSSSFGILL Trigger: TAGTAGAATTCCAAAACTAGAGGACAGATACCTCCAGGGAATCCTTAACAAAGGGGAGGAGACCAAAGACTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000568748.1 |
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| CDS CAA 90 bp | ATCTGTAGTTGTTGGAACATTGAAGAGACGCTTCAAGAAATACAGTaGCAGGATCCCAGAAAGAATAATAACAAGGCTCTGGGCTGTCGA | + |
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Preference number: 6 (lower is better) Translates to: ICSCWNIEETLQEIQ*QDPRKNNNKALGCR Trigger: TCGACAGCCCAGAGCCTTGTTATTATTCTTTCTGGGATCCTGCAACTGTATTTCTTGAAGCGTCTCTTCAATGTTCCAACAACTACAGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000288025.4 |
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| CDS CAA 72 bp | GCTCAACAGATTGAGTTGAAGTTAAGAGCATGGTGTTaGCCTGGTCCTTGTATACAATTAAAGCTAGGGACA | + |
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Preference number: 6 (lower is better) Translates to: AQQIELKLRAWC*PGPCIQLKLGT Trigger: TGTCCCTAGCTTTAATTGTATACAAGGACCAGGCAAACACCATGCTCTTAACTTCAACTCAATCTGTTGAGC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568748.1 |
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| CDS CCA 72 bp | ACTCCTGCTCAACAGATTGAGTTGAAGTTAAGAGCATaGTGTTTGCCTGGTCCTTGTATACAATTAAAGCTA | + |
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Preference number: 6 (lower is better) Translates to: TPAQQIELKLRA*CLPGPCIQLKL Trigger: TAGCTTTAATTGTATACAAGGACCAGGCAAACACCATGCTCTTAACTTCAACTCAATCTGTTGAGCAGGAGT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000568748.1 |
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