Pregenerated sensors for TMA16 (Homo sapiens)
Ensembl gene IDs: ENSG00000198498Ensembl transcript IDs: ENST00000358572.10, ENST00000506214.1, ENST00000508268.1, ENST00000508652.5, ENST00000509657.5, ENST00000511562.5
Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CCCTCCCAGCCTGAAATTCAGATGAAGACTAAACAACTTCTGCAGATCACATCTGTGCTTTGGGCATGGTaGCGTCCTCGTGGCCACGGA | + |
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Preference number: 4 (lower is better) Translates to: PSQPEIQMKTKQLLQITSVLWAW*RPRGHG Trigger: TCCGTGGCCACGAGGACGTCACCATGCCCAAAGCAC...AGATGTGATCTGCAGAAGTTGTTTAGTCTTCATCTGAATTTCAGGCTGGGAGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000358572.10 |
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| CDS-3UTR TCA 90 bp | CTAGACTCAAAGGGGAAGAAAGTTCACCTGTCAGGTACTTTACACACAGCTTCAGTGCTTTGGGCATGGTaGCGTCCTCGTGGCCACGGA | + |
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Preference number: 4 (lower is better) Translates to: LDSKGKKVHLSGTLHTASVLWAW*RPRGHG Trigger: TCCGTGGCCACGAGGACGTCACCATGCCCAAAGCAC...TGAAGCTGTGTGTAAAGTACCTGACAGGTGAACTTTCTTCCCCTTTGAGTCTAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508268.1 |
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| CDS-3UTR TCA 90 bp | CCCTCCCAGCCTGAAATTCAGATGAAGACTAAACAACTTCTGCAGATCACATCTTATTTTCAATTCAAGTaGAGACAATTAGGCCACTGC | + |
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Preference number: 4 (lower is better) Translates to: PSQPEIQMKTKQLLQITSYFQFK*RQLGHC Trigger: GCAGTGGCCTAATTGTCTTCACTTGAATTGAAAATA...AGATGTGATCTGCAGAAGTTGTTTAGTCTTCATCTGAATTTCAGGCTGGGAGGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000358572.10 |
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| CDS TCA 90 bp | CAACTGGGAGGCTATTACCATAGTACAGGTGAGACGATAGTGGCCTaGACCAGGGAAGTGGGAGATGGTAGTAGTAGTAGTCAAAGTCAT | + |
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Preference number: 5 (lower is better) Translates to: QLGGYYHSTGETIVA*TREVGDGSSSSQSH Trigger: ATGACTTTGACTACTACTACTACCATCTCCCACTTCCCTGGTTCAGGCCACTATCGTCTCACCTGTACTATGGTAATAGCCTCCCAGTTG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508652.5 |
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| CDS TCA 90 bp | ACGGGTTGGATGTGGACTATGAAAGTGACTGTAGAGTTTCTGATCTaGGCAACTGGGCAGGTGGTAATGCCACTGACTGGAATAAGAAAC | + |
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Preference number: 5 (lower is better) Translates to: TGWMWTMKVTVEFLI*ATGQVVMPLTGIRN Trigger: GTTTCTTATTCCAGTCAGTGGCATTACCACCTGCCCAGTTGCTCAGATCAGAAACTCTACAGTCACTTTCATAGTCCACATCCAACCCGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508652.5 |
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| CDS CCA 90 bp | AGAGTTTCTGATCTGAGCAACTGGGCAGGTGGTAATGCCACTGACTaGAATAAGAAACCTGCAGGAGGAGCAAGTTTTAGGAGAAAAGCT | + |
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Preference number: 5 (lower is better) Translates to: RVSDLSNWAGGNATD*NKKPAGGASFRRKA Trigger: AGCTTTTCTCCTAAAACTTGCTCCTCCTGCAGGTTTCTTATTCCAGTCAGTGGCATTACCACCTGCCCAGTTGCTCAGATCAGAAACTCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000508652.5 |
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| CDS CCA 90 bp | GATGTGGACTATGAAAGTGACTGTAGAGTTTCTGATCTGAGCAACTaGGCAGGTGGTAATGCCACTGACTGGAATAAGAAACCTGCAGGA | + |
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Preference number: 5 (lower is better) Translates to: DVDYESDCRVSDLSN*AGGNATDWNKKPAG Trigger: TCCTGCAGGTTTCTTATTCCAGTCAGTGGCATTACCACCTGCCCAGTTGCTCAGATCAGAAACTCTACAGTCACTTTCATAGTCCACATC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508652.5 |
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| CDS TCA 72 bp | GAGCGGTTCGGGGGAGCAGGAGGGGGCCCACCATGGTaGCGTCCTCGTGGCCACGGAGCAGCTCCGCACTCT | + |
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Preference number: 6 (lower is better) Translates to: ERFGGAGGGPPW*RPRGHGAAPHS Trigger: AGAGTGCGGAGCTGCTCCGTGGCCACGAGGACGTCACCATGGTGGGCCCCCTCCTGCTCCCCCGAACCGCTC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENST00000508652.5 ENST00000511562.5 |
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| CDS CAA 72 bp | TGGGCTGCGTGCTCGCCGGGAGCGGCGGAAGGGAGCTaGCGGCGGGAGGCTGAACTCTGCCTGGTGCTGAGT | + |
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Preference number: 6 (lower is better) Translates to: WAACSPGAAEGS*RREAELCLVLS Trigger: ACTCAGCACCAGGCAGAGTTCAGCCTCCCGCCGCAAGCTCCCTTCCGCCGCTCCCGGCGAGCACGCAGCCCA 71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509657.5 |
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| CDS CAA 90 bp | TTGGTGCTTTGGGCTGCGTGCTCGCCGGGAGCGGCGGAAGGGAGCTaGCGGCGGGAGGCTGAACTCTGCCTGGTGCTGAGTGCGAGGCTG | + |
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Preference number: 6 (lower is better) Translates to: LVLWAACSPGAAEGS*RREAELCLVLSARL Trigger: CAGCCTCGCACTCAGCACCAGGCAGAGTTCAGCCTCCCGCCGCAAGCTCCCTTCCGCCGCTCCCGGCGAGCACGCAGCCCAAAGCACCAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000509657.5 |
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| CDS TCA 72 bp | ATGTGGACTATGAAAGTGACTGTAGAGTTTCTGATCTaGGCAACTGGGCAGGTGGTAATGCCACTGACTGGA | + |
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Preference number: 6 (lower is better) Translates to: MWTMKVTVEFLI*ATGQVVMPLTG Trigger: TCCAGTCAGTGGCATTACCACCTGCCCAGTTGCTCAGATCAGAAACTCTACAGTCACTTTCATAGTCCACAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508652.5 |
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| CDS TCA 72 bp | CTTGAGCACAAGAGTAATGCAAACCTTCTGGAAGACTaGGTACTGCCACCAAGATCAAAATGCACTACTGTC | + |
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Preference number: 6 (lower is better) Translates to: LEHKSNANLLED*VLPPRSKCTTV Trigger: GACAGTAGTGCATTTTGATCTTGGTGGCAGTACTCAGTCTTCCAGAAGGTTTGCATTACTCTTGTGCTCAAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000506214.1 |
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| CDS CCA 72 bp | GCAGAATACTTGAGCACAAGAGTAATGCAAACCTTCTaGAAGACTGAGTACTGCCACCAAGATCAAAATGCA | + |
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Preference number: 6 (lower is better) Translates to: AEYLSTRVMQTF*KTEYCHQDQNA Trigger: TGCATTTTGATCTTGGTGGCAGTACTCAGTCTTCCAGAAGGTTTGCATTACTCTTGTGCTCAAGTATTCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000506214.1 |
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| CDS CCA 72 bp | TATGAAAGTGACTGTAGAGTTTCTGATCTGAGCAACTaGGCAGGTGGTAATGCCACTGACTGGAATAAGAAA | + |
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Preference number: 6 (lower is better) Translates to: YESDCRVSDLSN*AGGNATDWNKK Trigger: TTTCTTATTCCAGTCAGTGGCATTACCACCTGCCCAGTTGCTCAGATCAGAAACTCTACAGTCACTTTCATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508652.5 |
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| CDS CAA 90 bp | GGAGATGGTAGTAGTAGTAGTCAAAGTCATCAGATTCTAAACGCTTaGCTGACGGGTTGGATGTGGACTATGAAAGTGACTGTAGAGTTT | + |
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Preference number: 6 (lower is better) Translates to: GDGSSSSQSHQILNA*LTGWMWTMKVTVEF Trigger: AAACTCTACAGTCACTTTCATAGTCCACATCCAACCCGTCAGCAAAGCGTTTAGAATCTGATGACTTTGACTACTACTACTACCATCTCC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508652.5 |
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| CDS CAA 72 bp | AGTAGTAGTAGTCAAAGTCATCAGATTCTAAACGCTTaGCTGACGGGTTGGATGTGGACTATGAAAGTGACT | + |
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Preference number: 6 (lower is better) Translates to: SSSSQSHQILNA*LTGWMWTMKVT Trigger: AGTCACTTTCATAGTCCACATCCAACCCGTCAGCAAAGCGTTTAGAATCTGATGACTTTGACTACTACTACT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000508652.5 |
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| CDS GCA 72 bp | ACAAGAGTAATGCAAACCTTCTGGAAGACTGAGTACTaGCACCAAGATCAAAATGCACTACTGTCATCTTTT | + |
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Preference number: 6 (lower is better) Translates to: TRVMQTFWKTEY*HQDQNALLSSF Trigger: AAAAGATGACAGTAGTGCATTTTGATCTTGGTGGCAGTACTCAGTCTTCCAGAAGGTTTGCATTACTCTTGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000506214.1 |
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| CDS CAA 72 bp | AGTCTGAGATGCCCAAAAGACATGCAAGTAGAGAGTTaGAGAAATCCATATGTGATACTGCAAATTTGGAGT | + |
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Preference number: 6 (lower is better) Translates to: SLRCPKDMQVES*RNPYVILQIWS Trigger: ACTCCAAATTTGCAGTATCACATATGGATTTCTCAAACTCTCTACTTGCATGTCTTTTGGGCATCTCAGACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000508652.5 |
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