RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TM4SF5 (Homo sapiens)

Ensembl gene IDs: ENSG00000142484

Ensembl transcript IDs: ENST00000270560.4, ENST00000576530.2

Found 32 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp AGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTAACCCGGCGGTCAGTGGAGCACCACAGCAGCCCTTaGCCCCTGCCCGAACGGCTG +
Preference number: 4 (lower is better)
Translates to: SKGVSVQEGAGVTRRSVEHHSSP*PLPERL
Trigger: CAGCCGTTCGGGCAGGGGGCAAGGGCTGCTGTGGTG...CTCCACTGACCGCCGGGTTACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR CCA 90 bp GCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTAACCCGGCGGTCAGTGCCAGCAGGAGGGCGTTaGCCACAATGCAGACGAGGC +
Preference number: 4 (lower is better)
Translates to: ASKGVSVQEGAGVTRRSVPAGGR*PQCRRG
Trigger: GCCTCGTCTGCATTGTGGCCAACGCCCTCCTGCTGG...CACTGACCGCCGGGTTACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR GCA 90 bp AGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTAACCCGGCGGTCAGTCCCTGCCCGAACGGCTaGAATCCCCGGACACAGTAC +
Preference number: 4 (lower is better)
Translates to: SEQGSERPGRSRCNPAVSPCPNG*NPRTQY
Trigger: GTACTGTGTCCGGGGATTGCAGCCGTTCGGGCAGGG...ACTGACCGCCGGGTTACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR TCA 90 bp AGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTAACCCGGCGGTCAGTGGAGCCCATAGAGTGCGGTTaGGCAAGTAAGCTCCCGCGG +
Preference number: 4 (lower is better)
Translates to: SKGVSVQEGAGVTRRSVEPIECG*ASKLPR
Trigger: CCGCGGGAGCTTACTTGCTCAACCGCACTCTATGGG...CTCCACTGACCGCCGGGTTACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR GCA 90 bp AAAGCAGTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTGCAGCCCTTGCCCCCTaGCCGAACGGCTGCAATCCC +
Preference number: 4 (lower is better)
Translates to: KAVYSSEQGSERPGRSRCAALAP*PNGCNP
Trigger: GGGATTGCAGCCGTTCGGGCAGGGGGCAAGGGCTGC...ACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAACTGCTTT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR CCA 90 bp CTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTAACCCGGCGGTCAACTTGCAAGCTGAGATaGTTGGTGTTGGTCCAGGAG +
Preference number: 4 (lower is better)
Translates to: LASKGVSVQEGAGVTRRSTCKLR*LVLVQE
Trigger: CTCCTGGACCAACACCAACCATCTCAGCTTGCAAGT...TGACCGCCGGGTTACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR TCA 90 bp GTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTAACCCGTTCCCGTACACATGGTaGGGTGTCAGGAAGGACAGG +
Preference number: 4 (lower is better)
Translates to: VYSSEQGSERPGRSRCNPFPYTW*GVRKDR
Trigger: CCTGTCCTTCCTGACACCTCACCATGTGTACGGGAA...CGGGTTACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR CCA 90 bp AAGCAGTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTACCGAGAGGCAGTAGATaGCACCAAGCACCCCGAACG +
Preference number: 4 (lower is better)
Translates to: KQFILASKGVSVQEGAGVPRGSR*HQAPRT
Trigger: CGTTCGGGGTGCTTGGTGCCATCTACTGCCTCTCGG...TACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAACTGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR CCA 90 bp GAGCGCAAAGCAGTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCCGCAGAAGACACCAATaGTCGCGTTCACCAGCTGGA +
Preference number: 4 (lower is better)
Translates to: ERKAVYSSEQGSERPGRSRRRHQ*SRSPAG
Trigger: TCCAGCTGGTGAACGCGACCATTGGTGTCTTCTGCG...GCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAACTGCTTTGCGCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR TCA 90 bp GAGAGCGCAAAGCAGTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCCAGACTTGCAAGCTaGGATGGTTGGTGTTGGTCC +
Preference number: 4 (lower is better)
Translates to: ESAKQFILASKGVSVQEGARLAS*DGWCWS
Trigger: GGACCAACACCAACCATCTCAGCTTGCAAGTCTGGC...TCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAACTGCTTTGCGCTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR CCA 90 bp GTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTAACCCGGTCGCGTTCACCAGCTaGATCCCACACAGTACTATC +
Preference number: 4 (lower is better)
Translates to: VYSSEQGSERPGRSRCNPVAFTS*IPHSTI
Trigger: GATAGTACTGTGTGGGATCCAGCTGGTGAACGCGAC...CGGGTTACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR GCA 90 bp GCAGTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTAACCCCATGAGCCAGACTTaGAAGCTGAGATGGTTGGTG +
Preference number: 4 (lower is better)
Translates to: AVYSSEQGSERPGRSRCNPMSQT*KLRWLV
Trigger: CACCAACCATCTCAGCTTGCAAGTCTGGCTCATGGG...GTTACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAACTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR CCA 90 bp AAAGCAGTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTCGTTCATTAAGCATCTaGGTCCATTTCGGAGCCCAG +
Preference number: 4 (lower is better)
Translates to: KAVYSSEQGSERPGRSRCRSLSI*VHFGAQ
Trigger: CTGGGCTCCGAAATGGACCCAGATGCTTAATGAACG...ACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAACTGCTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS CCA 90 bp TGGGTCCATTTCGGAGCCCAGCTCCAGACACCGAGAGGCAGTAGATaGCACCAAGCACCCCGAACGCCGAGGAGAAGACCGAGCGCAGCA +
Preference number: 5 (lower is better)
Translates to: WVHFGAQLQTPRGSR*HQAPRTPRRRPSAA
Trigger: TGCTGCGCTCGGTCTTCTCCTCGGCGTTCGGGGTGCTTGGTGCCATCTACTGCCTCTCGGTGTCTGGAGCTGGGCTCCGAAATGGACCCA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS-3UTR CAA 90 bp AGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGTGTAACCCGGCGGTCAGTACCAGCAGGAGGGCGTaGGCCACAATGCAGACGAGG +
Preference number: 5 (lower is better)
Translates to: SEQGSERPGRSRCNPAVSTSRRA*ATMQTR
Trigger: CCTCGTCTGCATTGTGGCCAACGCCCTCCTGCTGGT...ACTGACCGCCGGGTTACACCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS CCA 90 bp CCCCCGCCAATGAAGCCGCCCATGAGCCAGACTTGCAAGCTGAGATaGTTGGTGTTGGTCCAGGAGGTCTCCCCATTAGGTACCAGCAGG +
Preference number: 5 (lower is better)
Translates to: PPPMKPPMSQTCKLR*LVLVQEVSPLGTSR
Trigger: CCTGCTGGTACCTAATGGGGAGACCTCCTGGACCAACACCAACCATCTCAGCTTGCAAGTCTGGCTCATGGGCGGCTTCATTGGCGGGGG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS CCA 90 bp TTCCTGCAATCGCCGCAGAAGACACCAATGGTCGCGTTCACCAGCTaGATCCCACACAGTACTATCTCCAGGCAGGAGGCGGCCACCAGC +
Preference number: 5 (lower is better)
Translates to: FLQSPQKTPMVAFTS*IPHSTISRQEAATS
Trigger: GCTGGTGGCCGCCTCCTGCCTGGAGATAGTACTGTGTGGGATCCAGCTGGTGAACGCGACCATTGGTGTCTTCTGCGGCGATTGCAGGAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS CCA 90 bp CGGTGTCTTCGAAGTGGTAGCCCCACTCGCCGTTCATTAAGCATCTaGGTCCATTTCGGAGCCCAGCTCCAGACACCGAGAGGCAGTAGA +
Preference number: 5 (lower is better)
Translates to: RCLRSGSPTRRSLSI*VHFGAQLQTPRGSR
Trigger: TCTACTGCCTCTCGGTGTCTGGAGCTGGGCTCCGAAATGGACCCAGATGCTTAATGAACGGCGAGTGGGGCTACCACTTCGAAGACACCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS GCA 90 bp AGTACCATTAGGCCCCCGCCAATGAAGCCGCCCATGAGCCAGACTTaGAAGCTGAGATGGTTGGTGTTGGTCCAGGAGGTCTCCCCATTA +
Preference number: 5 (lower is better)
Translates to: STIRPPPMKPPMSQT*KLRWLVLVQEVSPL
Trigger: TAATGGGGAGACCTCCTGGACCAACACCAACCATCTCAGCTTGCAAGTCTGGCTCATGGGCGGCTTCATTGGCGGGGGCCTAATGGTACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS-3UTR CAA 90 bp CGCAAAGCAGTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGCTGAGATGGTTGGTGTaGGTCCAGGAGGTCTCCCCA +
Preference number: 5 (lower is better)
Translates to: RKAVYSSEQGSERPGRSRLRWLV*VQEVSP
Trigger: TGGGGAGACCTCCTGGACCAACACCAACCATCTCAG...CCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAACTGCTTTGCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS-3UTR CAA 90 bp CGCAAAGCAGTTTATTCTAGCGAGCAAGGGAGTGAGCGTCCAGGAAGGAGCAGGGCCCATGAGCCAGACTaGCAAGCTGAGATGGTTGGT +
Preference number: 5 (lower is better)
Translates to: RKAVYSSEQGSERPGRSRAHEPD*QAEMVG
Trigger: ACCAACCATCTCAGCTTGCAAGTCTGGCTCATGGGC...CCTGCTCCTTCCTGGACGCTCACTCCCTTGCTCGCTAGAATAAACTGCTTTGCG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS CCA 72 bp TTCGGAGCCCAGCTCCAGACACCGAGAGGCAGTAGATaGCACCAAGCACCCCGAACGCCGAGGAGAAGACCG +
Preference number: 6 (lower is better)
Translates to: FGAQLQTPRGSR*HQAPRTPRRRP
Trigger: CGGTCTTCTCCTCGGCGTTCGGGGTGCTTGGTGCCATCTACTGCCTCTCGGTGTCTGGAGCTGGGCTCCGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS TCA 72 bp GAGGGGGCGCCTCGCACCGATCCCATAGAGTGCGGTTaGGCAAGTAAGCTCCCGCGGTGTCTTCGAAGTGGT +
Preference number: 6 (lower is better)
Translates to: EGAPRTDPIECG*ASKLPRCLRSG
Trigger: ACCACTTCGAAGACACCGCGGGAGCTTACTTGCTCAACCGCACTCTATGGGATCGGTGCGAGGCGCCCCCTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000270560.4
CDS CAA 90 bp GTGTTGGTCCAGGAGGTCTCCCCATTAGGTACCAGCAGGAGGGCGTaGGCCACAATGCAGACGAGGCAGAGGGTAATGAGGGAGAGCCCC +
Preference number: 6 (lower is better)
Translates to: VLVQEVSPLGTSRRA*ATMQTRQRVMRESP
Trigger: GGGGCTCTCCCTCATTACCCTCTGCCTCGTCTGCATTGTGGCCAACGCCCTCCTGCTGGTACCTAATGGGGAGACCTCCTGGACCAACAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS GCA 72 bp AGGCCCCCGCCAATGAAGCCGCCCATGAGCCAGACTTaGAAGCTGAGATGGTTGGTGTTGGTCCAGGAGGTC +
Preference number: 6 (lower is better)
Translates to: RPPPMKPPMSQT*KLRWLVLVQEV
Trigger: GACCTCCTGGACCAACACCAACCATCTCAGCTTGCAAGTCTGGCTCATGGGCGGCTTCATTGGCGGGGGCCT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS CCA 72 bp TCGCCGCAGAAGACACCAATGGTCGCGTTCACCAGCTaGATCCCACACAGTACTATCTCCAGGCAGGAGGCG +
Preference number: 6 (lower is better)
Translates to: SPQKTPMVAFTS*IPHSTISRQEA
Trigger: CGCCTCCTGCCTGGAGATAGTACTGTGTGGGATCCAGCTGGTGAACGCGACCATTGGTGTCTTCTGCGGCGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS CAA 72 bp CAGGAGGTCTCCCCATTAGGTACCAGCAGGAGGGCGTaGGCCACAATGCAGACGAGGCAGAGGGTAATGAGG +
Preference number: 6 (lower is better)
Translates to: QEVSPLGTSRRA*ATMQTRQRVMR
Trigger: CCTCATTACCCTCTGCCTCGTCTGCATTGTGGCCAACGCCCTCCTGCTGGTACCTAATGGGGAGACCTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS CAA 90 bp CCGCCAATGAAGCCGCCCATGAGCCAGACTTGCAAGCTGAGATGGTaGGTGTTGGTCCAGGAGGTCTCCCCATTAGGTACCAGCAGGAGG +
Preference number: 6 (lower is better)
Translates to: PPMKPPMSQTCKLRW*VLVQEVSPLGTSRR
Trigger: CCTCCTGCTGGTACCTAATGGGGAGACCTCCTGGACCAACACCAACCATCTCAGCTTGCAAGTCTGGCTCATGGGCGGCTTCATTGGCGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS CAA 90 bp ATGAAGCCGCCCATGAGCCAGACTTGCAAGCTGAGATGGTTGGTGTaGGTCCAGGAGGTCTCCCCATTAGGTACCAGCAGGAGGGCGTTG +
Preference number: 6 (lower is better)
Translates to: MKPPMSQTCKLRWLV*VQEVSPLGTSRRAL
Trigger: CAACGCCCTCCTGCTGGTACCTAATGGGGAGACCTCCTGGACCAACACCAACCATCTCAGCTTGCAAGTCTGGCTCATGGGCGGCTTCAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS CCA 72 bp CGAAGTGGTAGCCCCACTCGCCGTTCATTAAGCATCTaGGTCCATTTCGGAGCCCAGCTCCAGACACCGAGA +
Preference number: 6 (lower is better)
Translates to: RSGSPTRRSLSI*VHFGAQLQTPR
Trigger: TCTCGGTGTCTGGAGCTGGGCTCCGAAATGGACCCAGATGCTTAATGAACGGCGAGTGGGGCTACCACTTCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS CAA 72 bp CCCATGAGCCAGACTTGCAAGCTGAGATGGTTGGTGTaGGTCCAGGAGGTCTCCCCATTAGGTACCAGCAGG +
Preference number: 6 (lower is better)
Translates to: PMSQTCKLRWLV*VQEVSPLGTSR
Trigger: CCTGCTGGTACCTAATGGGGAGACCTCCTGGACCAACACCAACCATCTCAGCTTGCAAGTCTGGCTCATGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2
CDS CCA 72 bp ATGAAGCCGCCCATGAGCCAGACTTGCAAGCTGAGATaGTTGGTGTTGGTCCAGGAGGTCTCCCCATTAGGT +
Preference number: 6 (lower is better)
Translates to: MKPPMSQTCKLR*LVLVQEVSPLG
Trigger: ACCTAATGGGGAGACCTCCTGGACCAACACCAACCATCTCAGCTTGCAAGTCTGGCTCATGGGCGGCTTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000270560.4
ENST00000576530.2