Pregenerated sensors for TM4SF4 (Homo sapiens)
Ensembl gene IDs: ENSG00000169903Ensembl transcript IDs: ENST00000305354.5, ENST00000463068.1, ENST00000465758.1
Found 33 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR TCA 90 bp | AACCCTAGCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGTCATGCTGTAGAGTCTaGGCAGCTCATCTCGGAGGT | + |
|
Preference number: 2 (lower is better) Translates to: NPSHDDSLKRSVTSNSSKSCCRV*AAHLGG Trigger: ACCTCCGAGATGAGCTGCTCAGACTCTACAGCATGA...CTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGCTAGGGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| 3UTR-3UTR CCA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAATCGAGCAAAGCTGGTTaGAAAGAAGGAATAACTGCC | + |
|
Preference number: 2 (lower is better) Translates to: AMMTASKDQSQATQARQQSSKAG*KEGITA Trigger: GGCAGTTATTCCTTCTTTCCAACCAGCTTTGCTCGA...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR GCA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAATCAAAAGCTCCTCACTaGCTCCTTCACGGGGCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: AMMTASKDQSQATQARQQSKAPH*LLHGAS Trigger: AGAGGCCCCGTGAAGGAGGCAGTGAGGAGCTTTTGA...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CCA 90 bp | AACCCTAGCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGCCCCAGTGCACATTCTaGGGTGGTACGACACAGGTC | + |
|
Preference number: 4 (lower is better) Translates to: NPSHDDSLKRSVTSNSSKPQCTF*GGTTQV Trigger: GACCTGTGTCGTACCACCCCAGAATGTGCACTGGGG...CTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGCTAGGGTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR GCA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTTCCCACAGCCCTCGTTaGCGCAGCACCCACAGCAGT | + |
|
Preference number: 4 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFSHSPR*RSTHSS Trigger: ACTGCTGTGGGTGCTGCGGCAACGAGGGCTGTGGGA...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CCA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAACTACGACCAGCAGGATaGAGAAGAGGGTCAGATTCC | + |
|
Preference number: 4 (lower is better) Translates to: AMMTASKDQSQATQARQQLRPAG*RRGSDS Trigger: GGAATCTGACCCTCTTCTCCATCCTGCTGGTCGTAG...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CCA 90 bp | AACCCTAGCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGAGGCCATTGACCACCTaGATGGCGCAGAGAACCATC | + |
|
Preference number: 4 (lower is better) Translates to: NPSHDDSLKRSVTSNSSKRPLTT*MAQRTI Trigger: GATGGTTCTCTGCGCCATCCAGGTGGTCAATGGCCT...CTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGCTAGGGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR GCA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTTGGCACAGCCCCCAGTaGACATTCTGGGGTGGTACG | + |
|
Preference number: 4 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFWHSPQ*TFWGGT Trigger: CGTACCACCCCAGAATGTGCACTGGGGGCTGTGCCA...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CCA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTCAGCAGCCACAACACTaGCAGTCCCCACAGAGGGTC | + |
|
Preference number: 4 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFQQPQH*QSPQRV Trigger: GACCCTCTGTGGGGACTGCCAGTGTTGTGGCTGCTG...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR TCA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAAATAAGGCCTCATCATTaGGATAATCCCCGTCGTGGA | + |
|
Preference number: 4 (lower is better) Translates to: AMMTASKDQSQATQARQQIRPHH*DNPRRG Trigger: TCCACGACGGGGATTATCTCAATGATGAGGCCTTAT...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR TCA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTTCCAGGGAACCACATTaGGAGGCTCTCGGCACTTGT | + |
|
Preference number: 4 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFSREPH*EALGTC Trigger: ACAAGTGCCGAGAGCCTCTCAATGTGGTTCCCTGGA...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR TCA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAAAGAACCAAATTTCTGTaGACTGTGTCCTTGGAGTTG | + |
|
Preference number: 4 (lower is better) Translates to: AMMTASKDQSQATQARQQRTKFL*TVSLEL Trigger: CAACTCCAAGGACACAGTTCACAGAAATTTGGTTCT...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR TCA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTTCATGCTGTAGAGTCTaGGCAGCTCATCTCGGAGGT | + |
|
Preference number: 4 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFSCCRV*AAHLGG Trigger: ACCTCCGAGATGAGCTGCTCAGACTCTACAGCATGA...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CCA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTGTGCACATTCTGGGGTaGTACGACACAGGTCAGCAA | + |
|
Preference number: 4 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFVHILG*YDTGQQ Trigger: TTGCTGACCTGTGTCGTACCACCCCAGAATGTGCAC...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CCA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAAAAAAACCAGATCTCTTaGGAAAGGTGGTCGTTGTCA | + |
|
Preference number: 4 (lower is better) Translates to: AMMTASKDQSQATQARQQKNQIS*ERWSLS Trigger: TGACAACGACCACCTTTCCCAAGAGATCTGGTTTTT...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 46% GC, longest homopolymer 7 nt, total homopolymer stretches 11 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR TCA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAATCAGTATTTTGGGGCTaGGAACCAAATTTCTGTGAA | + |
|
Preference number: 4 (lower is better) Translates to: AMMTASKDQSQATQARQQSVFWG*EPNFCE Trigger: TTCACAGAAATTTGGTTCTCAGCCCCAAAATACTGA...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CCA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTCTCTTCAAGGGTTTTTaGCCAGAGAGTCCTTGTAAT | + |
|
Preference number: 4 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFLFKGF*PESPCN Trigger: ATTACAAGGACTCTCTGGCCAAAAACCCTTGAAGAG...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS CCA 90 bp | GTCCCCAGGAGGCCATTGACCACCTGGATGGCGCAGAGAACCATCTaGATTCCTCCTACGACCAGCAGGATGGAGAAGAGGGTCAGATTC | + |
|
Preference number: 5 (lower is better) Translates to: VPRRPLTTWMAQRTI*IPPTTSRMEKRVRF Trigger: GAATCTGACCCTCTTCTCCATCCTGCTGGTCGTAGGAGGAATCCAGATGGTTCTCTGCGCCATCCAGGTGGTCAATGGCCTCCTGGGGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000305354.5 ENST00000463068.1 |
||
| CDS-3UTR CAA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAATTCCCACAGCCCTCGTaGCCGCAGCACCCACAGCAG | + |
|
Preference number: 5 (lower is better) Translates to: AMMTASKDQSQATQARQQFPQPS*PQHPQQ Trigger: CTGCTGTGGGTGCTGCGGCAACGAGGGCTGTGGGAA...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CAA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAATTCCAGGGAACCACATaGAGAGGCTCTCGGCACTTG | + |
|
Preference number: 5 (lower is better) Translates to: AMMTASKDQSQATQARQQFQGTT*RGSRHL Trigger: CAAGTGCCGAGAGCCTCTCAATGTGGTTCCCTGGAA...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CAA 90 bp | GCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGCAGCAAAGAGGCTCTCGGCACTaGTTCCATAAGGCCTCATCA | + |
|
Preference number: 5 (lower is better) Translates to: AMMTASKDQSQATQARQQRGSRH*FHKASS Trigger: TGATGAGGCCTTATGGAACAAGTGCCGAGAGCCTCT...TTGCTGCCTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CAA 90 bp | AACCCTAGCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGGAAAAACCAGATCTCTaGGGAAAGGTGGTCGTTGTC | + |
|
Preference number: 5 (lower is better) Translates to: NPSHDDSLKRSVTSNSSKEKPDL*GKVVVV Trigger: GACAACGACCACCTTTCCCAAGAGATCTGGTTTTTC...CTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGCTAGGGTT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CAA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTCACCCACAGCAGTCATaGTTCTTCAGGCCCAAGAAC | + |
|
Preference number: 5 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFHPQQS*FFRPKN Trigger: GTTCTTGGGCCTGAAGAACAATGACTGCTGTGGGTG...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CAA 90 bp | AACCCTAGCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGACTGTGTCCTTGGAGTaGCTTCAGCTTCTCAAAAAT | + |
|
Preference number: 5 (lower is better) Translates to: NPSHDDSLKRSVTSNSSKTVSLE*LQLLKN Trigger: ATTTTTGAGAAGCTGAAGCAACTCCAAGGACACAGT...CTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGCTAGGGTT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CAA 90 bp | AACCCTAGCCATGATGACAGCCTCAAAAGATCAGTCACAAGCAACTCAAGCAAGCATTTAGGACCCTTGTaGATTGAAATGGCTGAGATG | + |
|
Preference number: 5 (lower is better) Translates to: NPSHDDSLKRSVTSNSSKHLGPL*IEMAEM Trigger: CATCTCAGCCATTTCAATCAACAAGGGTCCTAAATG...CTTGCTTGAGTTGCTTGTGACTGATCTTTTGAGGCTGTCATCATGGCTAGGGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS CCA 90 bp | ATCAAGACACCGCTTCCTAATATTCCTCCGAAAAACCAGATCTCTTaGGAAAGGTGGTCGTTGTCATCTATCACTTTTCCTCCAGGAAAA | + |
|
Preference number: 5 (lower is better) Translates to: IKTPLPNIPPKNQIS*ERWSLSSITFPPGK Trigger: TTTTCCTGGAGGAAAAGTGATAGATGACAACGACCACCTTTCCCAAGAGATCTGGTTTTTCGGAGGAATATTAGGAAGCGGTGTCTTGAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000305354.5 ENST00000465758.1 |
||
| CDS-3UTR CAA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTTGGGAAAGGTGGTCGTaGTCATCTATCACTTTTCCT | + |
|
Preference number: 5 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFWERWS*SSITFP Trigger: AGGAAAAGTGATAGATGACAACGACCACCTTTCCCA...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS-3UTR CAA 90 bp | CCCCCTCCTAAAACACACACAATCTTTGTTACGTTACCTCTGAATTCAGGTTTTAGGCATTTAGGACCCTaGTTGATTGAAATGGCTGAG | + |
|
Preference number: 5 (lower is better) Translates to: PPPKTHTIFVTLPLNSGFRHLGP*LIEMAE Trigger: CTCAGCCATTTCAATCAACAAGGGTCCTAAATGCCT...AAAACCTGAATTCAGAGGTAACGTAACAAAGATTGTGTGTGTTTTAGGAGGGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000305354.5 |
||
| CDS CAA 72 bp | CCACAGCCCTCGTTGCCGCAGCACCCACAGCAGTCATaGTTCTTCAGGCCCAAGAACACCAGCGCAGGGAAG | + |
|
Preference number: 6 (lower is better) Translates to: PQPSLPQHPQQS*FFRPKNTSAGK Trigger: CTTCCCTGCGCTGGTGTTCTTGGGCCTGAAGAACAATGACTGCTGTGGGTGCTGCGGCAACGAGGGCTGTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000305354.5 ENST00000463068.1 |
||
| CDS TCA 72 bp | GGATGGAGAAGAGGGTCAGATTCCAGGGAACCACATTaGGAGGCTCTCGGCACTTGTTCCATAAGGCCTCAT | + |
|
Preference number: 6 (lower is better) Translates to: GWRRGSDSREPH*EALGTCSIRPH Trigger: ATGAGGCCTTATGGAACAAGTGCCGAGAGCCTCTCAATGTGGTTCCCTGGAATCTGACCCTCTTCTCCATCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000305354.5 ENST00000463068.1 |
||
| CDS CCA 72 bp | TCACTGCCTCCTTCACGGGGCCTCTTCAAGGGTTTTTaGCCAGAGAGTCCTTGTAATTGTCTCCAATTCAAT | + |
|
Preference number: 6 (lower is better) Translates to: SLPPSRGLFKGF*PESPCNCLQFN Trigger: ATTGAATTGGAGACAATTACAAGGACTCTCTGGCCAAAAACCCTTGAAGAGGCCCCGTGAAGGAGGCAGTGA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENST00000305354.5 ENST00000465758.1 |
||
| CDS CAA 72 bp | CCCCATGTACTATTGGCCATGAGGCATTTAGGACCCTaGTTGATTGAAATGGCTGAGATGATAAACGAGTAT | + |
|
Preference number: 6 (lower is better) Translates to: PHVLLAMRHLGP*LIEMAEMINEY Trigger: ATACTCGTTTATCATCTCAGCCATTTCAATCAACAAGGGTCCTAAATGCCTCATGGCCAATAGTACATGGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENST00000305354.5 ENST00000463068.1 |
||
| CDS CAA 72 bp | CATGTACTATTGGCCATGAGGCATTTAGGACCCTTGTaGATTGAAATGGCTGAGATGATAAACGAGTATCCA | + |
|
Preference number: 6 (lower is better) Translates to: HVLLAMRHLGPL*IEMAEMINEYP Trigger: TGGATACTCGTTTATCATCTCAGCCATTTCAATCAACAAGGGTCCTAAATGCCTCATGGCCAATAGTACATG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENST00000305354.5 ENST00000463068.1 |
||