Pregenerated sensors for TIMM17B (Homo sapiens)
Ensembl gene IDs: ENSG00000126768Ensembl transcript IDs: ENST00000376582.7, ENST00000396779.7, ENST00000464663.1, ENST00000466995.5, ENST00000490755.2
Found 49 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CTCAACCGGTGCCGAATTCCTATATGTGCCAAGCACCATGCCATATaGAGGGATACAGCCATGAACAAGGTAGGTCTGCTCTCTGCCCTC | + |
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Preference number: 1 (lower is better) Translates to: LNRCRIPICAKHHAI*RDTAMNKVGLLSAL Trigger: GAGGGCAGAGAGCAGACCTACCTTGTTCATGGCTGTATCCCTGCATATGGCATGGTGCTTGGCACATATAGGAATTCGGCACCGGTTGAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR TCA 90 bp | CTCTGCCCTCTCAGAGCTCACATTAACGGTGGGAGACACAGATCTTaGGCAAGAGTAGATAAACAAGGGAGCTTCAGACAGCAATCTGCA | + |
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Preference number: 1 (lower is better) Translates to: LCPLRAHINGGRHRS*ARVDKQGSFRQQSA Trigger: TGCAGATTGCTGTCTGAAGCTCCCTTGTTTATCTACTCTTGCTCAAGATCTGTGTCTCCCACCGTTAATGTGAGCTCTGAGAGGGCAGAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR-3UTR TCA 90 bp | GGATACAGCCATGAACAAGGTAGGTCTGCTCTCTGCCCTCTCAGAGCTCACATTAGGGGGAATCTGTGCTaGGACCTTGAGGATGACAAA | + |
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Preference number: 2 (lower is better) Translates to: GYSHEQGRSALCPLRAHIRGNLC*DLEDDK Trigger: TTTGTCATCCTCAAGGTCTCAGCACAGATTCCCCCT...AATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACCTTGTTCATGGCTGTATCC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR-3UTR CCA 90 bp | TGGGCAAAGATCCAGGGAGGAGAGTTCCAGGAGTCTAGGGGAGGGACGGGGCTAACCTTGGCTAATAGATaGCATTTAAAGTCATGGCAT | + |
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Preference number: 2 (lower is better) Translates to: WAKIQGGEFQESRGGTGLTLANR*HLKSWH Trigger: ATGCCATGACTTTAAATGCCATCTATTAGCCAAGGT...TAGCCCCGTCCCTCCCCTAGACTCCTGGAACTCTCCTCCCTGGATCTTTGCCCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR-3UTR GCA 90 bp | GGTAGGTCTGCTCTCTGCCCTCTCAGAGCTCACATTAACGGTGGGAGACACAGAAGGCTGTCTTCCGTCTaGCAATTAAATTCCTGTCAT | + |
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Preference number: 2 (lower is better) Translates to: GRSALCPLRAHINGGRHRRLSSV*QLNSCH Trigger: ATGACAGGAATTTAATTGGCAGACGGAAGACAGCCT...TCTGTGTCTCCCACCGTTAATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR-3UTR TCA 90 bp | GGATACAGCCATGAACAAGGTAGGTCTGCTCTCTGCCCTCTCAGAGCTCACATTGTAGAGGAAATGCCATaGAGAAATATGACTGGGGCT | + |
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Preference number: 2 (lower is better) Translates to: GYSHEQGRSALCPLRAHIVEEMP*RNMTGA Trigger: AGCCCCAGTCATATTTCTTCATGGCATTTCCTCTAC...AATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACCTTGTTCATGGCTGTATCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR-3UTR CCA 90 bp | AACAAGGGAGCTTCAGACAGCAATCTGCACTGTAGAGGAAATGCCATGAAGAAATTCTGGGAGGGGAGGTaGTCAGAGAAAAAGAATTAT | + |
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Preference number: 2 (lower is better) Translates to: NKGASDSNLHCRGNAMKKFWEGR*SEKKNY Trigger: ATAATTCTTTTTCTCTGACCACCTCCCCTCCCAGAA...TTTCTTCATGGCATTTCCTCTACAGTGCAGATTGCTGTCTGAAGCTCCCTTGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR GCA 72 bp | TGCCGAATTCCTATATGTGCCAAGCACCATGCCATATaGAGGGATACAGCCATGAACAAGGTAGGTCTGCTC | + |
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Preference number: 3 (lower is better) Translates to: CRIPICAKHHAI*RDTAMNKVGLL Trigger: GAGCAGACCTACCTTGTTCATGGCTGTATCCCTGCATATGGCATGGTGCTTGGCACATATAGGAATTCGGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR CCA 72 bp | GCAGAGACCTTGGCTAATAGATGGCATTTAAAGTCATaGCATTTGCGATCTTCTGGGAGGGGAGGTGGTCAG | + |
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Preference number: 3 (lower is better) Translates to: AETLANRWHLKS*HLRSSGRGGGQ Trigger: CTGACCACCTCCCCTCCCAGAAGATCGCAAATGCCATGACTTTAAATGCCATCTATTAGCCAAGGTCTCTGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR-3UTR CAA 90 bp | CTTGAAGGAGGGGGAATCTGTGCTGAGACCTTGAGGATGACAAACTTGGGCAAATTAAAGTCATGGCATTaGCGATCTTCTGGGAGGGGA | + |
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Preference number: 3 (lower is better) Translates to: LEGGGICAETLRMTNLGKLKSWH*RSSGRG Trigger: TCCCCTCCCAGAAGATCGCAAATGCCATGACTTTAA...TTTGCCCAAGTTTGTCATCCTCAAGGTCTCAGCACAGATTCCCCCTCCTTCAAG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR TCA 72 bp | CTTCAGACAGCAATCTGCACTGTAGAGGAAATGCCATaGAGAAATATGACTGGGGCTGAGGGGTCAGGAAAG | + |
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Preference number: 3 (lower is better) Translates to: LQTAICTVEEMP*RNMTGAEGSGK Trigger: CTTTCCTGACCCCTCAGCCCCAGTCATATTTCTTCATGGCATTTCCTCTACAGTGCAGATTGCTGTCTGAAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR TCA 72 bp | CTCAGAGCTCACATTAACGGTGGGAGACACAGATCTTaGGCAAGAGTAGATAAACAAGGGAGCTTCAGACAG | + |
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Preference number: 3 (lower is better) Translates to: LRAHINGGRHRS*ARVDKQGSFRQ Trigger: CTGTCTGAAGCTCCCTTGTTTATCTACTCTTGCTCAAGATCTGTGTCTCCCACCGTTAATGTGAGCTCTGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR-3UTR CAA 90 bp | CTTGAAGGAGGGGGAATCTGTGCTGAGACCTTGAGGATGACAAACTTGGGCAAAGGCTACATATATAAATaGCAGAGACCTTGGCTAATA | + |
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Preference number: 3 (lower is better) Translates to: LEGGGICAETLRMTNLGKGYIYK*QRPWLI Trigger: TATTAGCCAAGGTCTCTGCAATTTATATATGTAGCC...TTTGCCCAAGTTTGTCATCCTCAAGGTCTCAGCACAGATTCCCCCTCCTTCAAG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR CCA 90 bp | TGGGCAAAGATCCAGGGAGGAGAGTTCCAGGAGTCTAGGGGAGGGACGGGGCTAGCCCACCATGGCCAGTaGGCCACCTGGGGGAGTTGG | + |
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Preference number: 4 (lower is better) Translates to: WAKIQGGEFQESRGGTGLAHHGQ*ATWGSW Trigger: CCAACTCCCCCAGGTGGCCCACTGGCCATGGTGGGC...TAGCCCCGTCCCTCCCCTAGACTCCTGGAACTCTCCTCCCTGGATCTTTGCCCA 64% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR TCA 90 bp | TGGGCAAAGATCCAGGGAGGAGAGTTCCAGGAGTCTAGGGGAGGGACGGGGCTAAGGGGGAATCTGTGCTaGGACCTTGAGGATGACAAA | + |
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Preference number: 4 (lower is better) Translates to: WAKIQGGEFQESRGGTGLRGNLC*DLEDDK Trigger: TTTGTCATCCTCAAGGTCTCAGCACAGATTCCCCCT...TAGCCCCGTCCCTCCCCTAGACTCCTGGAACTCTCCTCCCTGGATCTTTGCCCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR CCA 90 bp | GGATACAGCCATGAACAAGGTAGGTCTGCTCTCTGCCCTCTCAGAGCTCACATTGGGGTCCTCCAGGAATaGGGGCGCATTTCGGAACTG | + |
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Preference number: 4 (lower is better) Translates to: GYSHEQGRSALCPLRAHIGVLQE*GRISEL Trigger: CAGTTCCGAAATGCGCCCCCATTCCTGGAGGACCCC...AATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACCTTGTTCATGGCTGTATCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR GCA 90 bp | TGGGCAAAGATCCAGGGAGGAGAGTTCCAGGAGTCTAGGGGAGGGACGGGGCTACCGAATTCCTATATGTaGCAAGCACCATGCCATATG | + |
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Preference number: 4 (lower is better) Translates to: WAKIQGGEFQESRGGTGLPNSYM*QAPCHM Trigger: CATATGGCATGGTGCTTGGCACATATAGGAATTCGG...TAGCCCCGTCCCTCCCCTAGACTCCTGGAACTCTCCTCCCTGGATCTTTGCCCA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR GCA 90 bp | AACAAGGGAGCTTCAGACAGCAATCTGCACTGTAGAGGAAATGCCATGAAGAAACCAGGGGTCACTCACTaGGGGCAGCCAGCACAGCCC | + |
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Preference number: 4 (lower is better) Translates to: NKGASDSNLHCRGNAMKKPGVTH*GQPAQP Trigger: GGGCTGTGCTGGCTGCCCGCAGTGAGTGACCCCTGG...TTTCTTCATGGCATTTCCTCTACAGTGCAGATTGCTGTCTGAAGCTCCCTTGTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR CCA 90 bp | GGATACAGCCATGAACAAGGTAGGTCTGCTCTCTGCCCTCTCAGAGCTCACATTATCCACAATTCGCCATaGGCAGGGCTCCCGAGCGTA | + |
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Preference number: 4 (lower is better) Translates to: GYSHEQGRSALCPLRAHIIHNSP*AGLPSV Trigger: TACGCTCGGGAGCCCTGCCCATGGCGAATTGTGGAT...AATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACCTTGTTCATGGCTGTATCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR CAA 72 bp | GGGGGAATCTGTGCTGAGACCTTGAGGATGACAAACTaGGGCAAAGATCCAGGGAGGAGAGTTCCAGGAGTC | + |
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Preference number: 4 (lower is better) Translates to: GGICAETLRMTN*GKDPGRRVPGV Trigger: GACTCCTGGAACTCTCCTCCCTGGATCTTTGCCCAAGTTTGTCATCCTCAAGGTCTCAGCACAGATTCCCCC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR GCA 90 bp | GGTAGGTCTGCTCTCTGCCCTCTCAGAGCTCACATTAACGGTGGGAGACACAGAATGTGCCAAGCACCATaGCATATGCAGGGATACAGC | + |
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Preference number: 4 (lower is better) Translates to: GRSALCPLRAHINGGRHRMCQAP*HMQGYS Trigger: GCTGTATCCCTGCATATGGCATGGTGCTTGGCACAT...TCTGTGTCTCCCACCGTTAATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR GCA 90 bp | TGGGCAAAGATCCAGGGAGGAGAGTTCCAGGAGTCTAGGGGAGGGACGGGGCTAAGGCTGTCTTCCGTCTaGCAATTAAATTCCTGTCAT | + |
|
Preference number: 4 (lower is better) Translates to: WAKIQGGEFQESRGGTGLRLSSV*QLNSCH Trigger: ATGACAGGAATTTAATTGGCAGACGGAAGACAGCCT...TAGCCCCGTCCCTCCCCTAGACTCCTGGAACTCTCCTCCCTGGATCTTTGCCCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR GCA 90 bp | GGATACAGCCATGAACAAGGTAGGTCTGCTCTCTGCCCTCTCAGAGCTCACATTGGTAGGTCTGCTCTCTaGCCTCTCAGAGCTCACATT | + |
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Preference number: 4 (lower is better) Translates to: GYSHEQGRSALCPLRAHIGRSAL*PLRAHI Trigger: AATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACC...AATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACCTTGTTCATGGCTGTATCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR TCA 90 bp | AACAAGGGAGCTTCAGACAGCAATCTGCACTGTAGAGGAAATGCCATGAAGAAAAAATATGACTGGGGCTaGGGGGTCAGGAAAGGCCTC | + |
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Preference number: 4 (lower is better) Translates to: NKGASDSNLHCRGNAMKKKYDWG*GVRKGL Trigger: GAGGCCTTTCCTGACCCCTCAGCCCCAGTCATATTT...TTTCTTCATGGCATTTCCTCTACAGTGCAGATTGCTGTCTGAAGCTCCCTTGTT 49% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR GCA 90 bp | TCTTCCGTCTGCCAATTAAATTCCTGTCATTTTCCTCTATCCGGGTTTCTGAGCCACAGCCCCGGTCAATaGTCCACTGGTGATAGAGTT | + |
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Preference number: 4 (lower is better) Translates to: SSVCQLNSCHFPLSGFLSHSPGQ*STGDRV Trigger: AACTCTATCACCAGTGGAGCATTGACCGGGGCTGTG...GCTCAGAAACCCGGATAGAGGAAAATGACAGGAATTTAATTGGCAGACGGAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR CCA 90 bp | GGATACAGCCATGAACAAGGTAGGTCTGCTCTCTGCCCTCTCAGAGCTCACATTTTCTGGGAGGGGAGGTaGTCAGAGAAAAAGAATTAT | + |
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Preference number: 4 (lower is better) Translates to: GYSHEQGRSALCPLRAHIFWEGR*SEKKNY Trigger: ATAATTCTTTTTCTCTGACCACCTCCCCTCCCAGAA...AATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACCTTGTTCATGGCTGTATCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR TCA 90 bp | AACAAGGGAGCTTCAGACAGCAATCTGCACTGTAGAGGAAATGCCATGAAGAAAGGTGGGTGGATCACTTaGGTTCAGGAATTAGAGACC | + |
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Preference number: 4 (lower is better) Translates to: NKGASDSNLHCRGNAMKKGGWIT*VQELET Trigger: GGTCTCTAATTCCTGAACTCAAGTGATCCACCCACC...TTTCTTCATGGCATTTCCTCTACAGTGCAGATTGCTGTCTGAAGCTCCCTTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR GCA 90 bp | AACAAGGGAGCTTCAGACAGCAATCTGCACTGTAGAGGAAATGCCATGAAGAAACTACCTCTCAACCGGTaGCGAATTCCTATATGTGCC | + |
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Preference number: 4 (lower is better) Translates to: NKGASDSNLHCRGNAMKKLPLNR*RIPICA Trigger: GGCACATATAGGAATTCGGCACCGGTTGAGAGGTAG...TTTCTTCATGGCATTTCCTCTACAGTGCAGATTGCTGTCTGAAGCTCCCTTGTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR GCA 90 bp | AACAAGGGAGCTTCAGACAGCAATCTGCACTGTAGAGGAAATGCCATGAAGAAAAAGCACCATGCCATATaGAGGGATACAGCCATGAAC | + |
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Preference number: 4 (lower is better) Translates to: NKGASDSNLHCRGNAMKKKHHAI*RDTAMN Trigger: GTTCATGGCTGTATCCCTGCATATGGCATGGTGCTT...TTTCTTCATGGCATTTCCTCTACAGTGCAGATTGCTGTCTGAAGCTCCCTTGTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR CCA 90 bp | GGATACAGCCATGAACAAGGTAGGTCTGCTCTCTGCCCTCTCAGAGCTCACATTACCTTGGCTAATAGATaGCATTTAAAGTCATGGCAT | + |
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Preference number: 4 (lower is better) Translates to: GYSHEQGRSALCPLRAHITLANR*HLKSWH Trigger: ATGCCATGACTTTAAATGCCATCTATTAGCCAAGGT...AATGTGAGCTCTGAGAGGGCAGAGAGCAGACCTACCTTGTTCATGGCTGTATCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| 3UTR CAA 72 bp | ACCTTGGCTAATAGATGGCATTTAAAGTCATGGCATTaGCGATCTTCTGGGAGGGGAGGTGGTCAGAGAAAA | + |
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Preference number: 4 (lower is better) Translates to: TLANRWHLKSWH*RSSGRGGGQRK Trigger: TTTTCTCTGACCACCTCCCCTCCCAGAAGATCGCAAATGCCATGACTTTAAATGCCATCTATTAGCCAAGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS CCA 90 bp | TCTGTGCGGCCGATGCCTCCCCCGCCCGACCCCCACGGCTGGCCTTaGCGTCGCAGCAATATTCCGGATGCCTGTGCCCATTGCCGTACC | + |
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Preference number: 5 (lower is better) Translates to: SVRPMPPPPDPHGWP*RRSNIPDACAHCRT Trigger: GGTACGGCAATGGGCACAGGCATCCGGAATATTGCTGCGACGCCAAGGCCAGCCGTGGGGGTCGGGCGGGGGAGGCATCGGCCGCACAGA 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS CCA 90 bp | CATGGCTCTGTGCGGCCGATGCCTCCCCCGCCCGACCCCCACGGCTaGCCTTGGCGTCGCAGCAATATTCCGGATGCCTGTGCCCATTGC | + |
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Preference number: 5 (lower is better) Translates to: HGSVRPMPPPPDPHG*PWRRSNIPDACAHC Trigger: GCAATGGGCACAGGCATCCGGAATATTGCTGCGACGCCAAGGCCAGCCGTGGGGGTCGGGCGGGGGAGGCATCGGCCGCACAGAGCCATG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS GCA 90 bp | GCCCGACCCCCACGGCTGGCCTTGGCGTCGCAGCAATATTCCGGATaGCTGTGCCCATTGCCGTACCAGGGCTCCCGAGCGTACTCCTCC | + |
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Preference number: 5 (lower is better) Translates to: ARPPRLALASQQYSG*LCPLPYQGSRAYSS Trigger: GGAGGAGTACGCTCGGGAGCCCTGGTACGGCAATGGGCACAGGCATCCGGAATATTGCTGCGACGCCAAGGCCAGCCGTGGGGGTCGGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS TCA 90 bp | CGCCATGGGCTTCTCTGGTTGTGGCCCCTCATAACGGAGCCCGAATaGCAGGAACCGAGTGGGGGTAGCGGGAGATACGTTAAGAGTCCC | + |
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Preference number: 5 (lower is better) Translates to: RHGLLWLWPLITEPE*QEPSGGSGRYVKSP Trigger: GGGACTCTTAACGTATCTCCCGCTACCCCCACTCGGTTCCTGTCATTCGGGCTCCGTTATGAGGGGCCACAACCAGAGAAGCCCATGGCG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS CCA 90 bp | GCGTCGGAGCTTTCCGCCTGCACGAGTGTATTGGTAACGTTGGGGTaGGTGCACTCTTTTGGAGCTGGAGGAAGTGCTGCCCTCTGCTCC | + |
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Preference number: 5 (lower is better) Translates to: ASELSACTSVLVTLG*VHSFGAGGSAALCS Trigger: GGAGCAGAGGGCAGCACTTCCTCCAGCTCCAAAAGAGTGCACCCACCCCAACGTTACCAATACACTCGTGCAGGCGGAAAGCTCCGACGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000376582.7 ENST00000396779.7 |
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| CDS-3UTR CAA 90 bp | TGGGCAAAGATCCAGGGAGGAGAGTTCCAGGAGTCTAGGGGAGGGACGGGGCTAATCTGTGCTGAGACCTaGAGGATGACAAACTTGGGC | + |
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Preference number: 5 (lower is better) Translates to: WAKIQGGEFQESRGGTGLICAET*RMTNLG Trigger: GCCCAAGTTTGTCATCCTCAAGGTCTCAGCACAGAT...TAGCCCCGTCCCTCCCCTAGACTCCTGGAACTCTCCTCCCTGGATCTTTGCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS TCA 90 bp | TACAGGAGCCAGGCTCGGCACATAGTAGGTGAGTGGGCACCAGAATaGATAAGTGCACGTGACTGGCAGCTCCAAGCAGTTTTCAGAGCA | + |
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Preference number: 5 (lower is better) Translates to: YRSQARHIVGEWAPE*ISARDWQLQAVFRA Trigger: TGCTCTGAAAACTGCTTGGAGCTGCCAGTCACGTGCACTTATTCATTCTGGTGCCCACTCACCTACTATGTGCCGAGCCTGGCTCCTGTA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000464663.1 |
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| CDS-3UTR CAA 90 bp | TCTTCCGTCTGCCAATTAAATTCCTGTCATTTTCCTCTATCCGGGTTTCTGAGCCGTCTAACAGGGGCATaGCGGAAACCCTTGATGGCC | + |
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Preference number: 5 (lower is better) Translates to: SSVCQLNSCHFPLSGFLSRLTGA*RKPLMA Trigger: GGCCATCAAGGGTTTCCGCAATGCCCCTGTTAGACG...GCTCAGAAACCCGGATAGAGGAAAATGACAGGAATTTAATTGGCAGACGGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR CAA 90 bp | AACAAGGGAGCTTCAGACAGCAATCTGCACTGTAGAGGAAATGCCATGAAGAAATTAAAGTCATGGCATTaGCGATCTTCTGGGAGGGGA | + |
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Preference number: 5 (lower is better) Translates to: NKGASDSNLHCRGNAMKKLKSWH*RSSGRG Trigger: TCCCCTCCCAGAAGATCGCAAATGCCATGACTTTAA...TTTCTTCATGGCATTTCCTCTACAGTGCAGATTGCTGTCTGAAGCTCCCTTGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS-3UTR CAA 90 bp | AACAAGGGAGCTTCAGACAGCAATCTGCACTGTAGAGGAAATGCCATGAAGAAAGGCTACATATATAAATaGCAGAGACCTTGGCTAATA | + |
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Preference number: 5 (lower is better) Translates to: NKGASDSNLHCRGNAMKKGYIYK*QRPWLI Trigger: TATTAGCCAAGGTCTCTGCAATTTATATATGTAGCC...TTTCTTCATGGCATTTCCTCTACAGTGCAGATTGCTGTCTGAAGCTCCCTTGTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000466995.5 |
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| CDS CCA 72 bp | GTGCGGCCGATGCCTCCCCCGCCCGACCCCCACGGCTaGCCTTGGCGTCGCAGCAATATTCCGGATGCCTGT | + |
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Preference number: 6 (lower is better) Translates to: VRPMPPPPDPHG*PWRRSNIPDAC Trigger: ACAGGCATCCGGAATATTGCTGCGACGCCAAGGCCAGCCGTGGGGGTCGGGCGGGGGAGGCATCGGCCGCAC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS CAA 72 bp | GCCGATGCCTCCCCCGCCCGACCCCCACGGCTGGCCTaGGCGTCGCAGCAATATTCCGGATGCCTGTGCCCA | + |
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Preference number: 6 (lower is better) Translates to: ADASPARPPRLA*ASQQYSGCLCP Trigger: TGGGCACAGGCATCCGGAATATTGCTGCGACGCCAAGGCCAGCCGTGGGGGTCGGGCGGGGGAGGCATCGGC 71% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS CAA 90 bp | CTCTGTGCGGCCGATGCCTCCCCCGCCCGACCCCCACGGCTGGCCTaGGCGTCGCAGCAATATTCCGGATGCCTGTGCCCATTGCCGTAC | + |
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Preference number: 6 (lower is better) Translates to: LCAADASPARPPRLA*ASQQYSGCLCPLPY Trigger: GTACGGCAATGGGCACAGGCATCCGGAATATTGCTGCGACGCCAAGGCCAGCCGTGGGGGTCGGGCGGGGGAGGCATCGGCCGCACAGAG 69% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS GCA 72 bp | CCACGGCTGGCCTTGGCGTCGCAGCAATATTCCGGATaGCTGTGCCCATTGCCGTACCAGGGCTCCCGAGCG | + |
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Preference number: 6 (lower is better) Translates to: PRLALASQQYSG*LCPLPYQGSRA Trigger: CGCTCGGGAGCCCTGGTACGGCAATGGGCACAGGCATCCGGAATATTGCTGCGACGCCAAGGCCAGCCGTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS GCA 72 bp | CTGGCCTTGGCGTCGCAGCAATATTCCGGATGCCTGTaGCCATTGCCGTACCAGGGCTCCCGAGCGTACTCC | + |
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Preference number: 6 (lower is better) Translates to: LALASQQYSGCL*PLPYQGSRAYS Trigger: GGAGTACGCTCGGGAGCCCTGGTACGGCAATGGGCACAGGCATCCGGAATATTGCTGCGACGCCAAGGCCAG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS CAA 90 bp | GAGCTCCAGTTGGGTGGGGTGGAGGGTGGAAGACAGAGGCCATGTTaGCAATCCCTACAAAATCCCAGATACAGGAGCCAGGCTCGGCAC | + |
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Preference number: 6 (lower is better) Translates to: ELQLGGVEGGRQRPC*QSLQNPRYRSQARH Trigger: GTGCCGAGCCTGGCTCCTGTATCTGGGATTTTGTAGGGATTGCAAACATGGCCTCTGTCTTCCACCCTCCACCCCACCCAACTGGAGCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENST00000464663.1 |
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| CDS TCA 72 bp | CTTCTCTGGTTGTGGCCCCTCATAACGGAGCCCGAATaGCAGGAACCGAGTGGGGGTAGCGGGAGATACGTT | + |
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Preference number: 6 (lower is better) Translates to: LLWLWPLITEPE*QEPSGGSGRYV Trigger: AACGTATCTCCCGCTACCCCCACTCGGTTCCTGTCATTCGGGCTCCGTTATGAGGGGCCACAACCAGAGAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000490755.2 |
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| CDS CCA 72 bp | CTTTCCGCCTGCACGAGTGTATTGGTAACGTTGGGGTaGGTGCACTCTTTTGGAGCTGGAGGAAGTGCTGCC | + |
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Preference number: 6 (lower is better) Translates to: LSACTSVLVTLG*VHSFGAGGSAA Trigger: GGCAGCACTTCCTCCAGCTCCAAAAGAGTGCACCCACCCCAACGTTACCAATACACTCGTGCAGGCGGAAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENST00000376582.7 ENST00000396779.7 |
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