RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for THAP6 (Homo sapiens)

Ensembl gene IDs: ENSG00000174796

Ensembl transcript IDs: ENST00000311638.7, ENST00000380837.7, ENST00000502620.1, ENST00000503831.1, ENST00000504190.5, ENST00000504218.5, ENST00000504384.5, ENST00000506261.5, ENST00000507556.5, ENST00000507557.5, ENST00000507885.5, ENST00000508105.5, ENST00000514480.1

Found 280 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTaGGTTTTGCTTTACACAGGCCAGTTCTTTCCTGGGCTAGGGTGG +
Preference number: 1 (lower is better)
Translates to: RVRLGCQRNFWRGMT*VLLYTGQFFPGLGW
Trigger: CCACCCTAGCCCAGGAAAGAACTGGCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CCA 90 bp CAAAGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTaGAGGGGGATGACTTGGGTTTTGCTTTACACAGGCCAGTTCTTT +
Preference number: 1 (lower is better)
Translates to: QSGTLRVRLGCQRNF*RGMTWVLLYTGQFF
Trigger: AAAGAACTGGCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACTTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CCA 90 bp TTGCTTTACACAGGCCAGTTCTTTCCTGGGCTAGGGTGGAATCTCTaGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTT +
Preference number: 1 (lower is better)
Translates to: LLYTGQFFPGLGWNL*EQRTEIHTVFRHLF
Trigger: AAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGAGATTCCACCCTAGCCCAGGAAAGAACTGGCCTGTGTAAAGCAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CCA 90 bp AGTGACTGTGGCAATTTTGATAGTGGCAGACTGGGATTTTACTCTTaGAAAGGTCTTCCAGGTTTGGTGTATTCTAAGCAGCCAGTAGAG +
Preference number: 1 (lower is better)
Translates to: SDCGNFDSGRLGFYS*KGLPGLVYSKQPVE
Trigger: CTCTACTGGCTGCTTAGAATACACCAAACCTGGAAGACCTTTCCAAGAGTAAAATCCCAGTCTGCCACTATCAAAATTGCCACAGTCACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CCA 90 bp ATGAGGTCCATGTATGTACATGTGCTTCTAAGTAGAGTGTTGCTTTaGCAAATGGTTTTTATTCTAACCCACAGTATTTATGACTCTCAA +
Preference number: 1 (lower is better)
Translates to: MRSMYVHVLLSRVLL*QMVFILTHSIYDSQ
Trigger: TTGAGAGTCATAAATACTGTGGGTTAGAATAAAAACCATTTGCCAAAGCAACACTCTACTTAGAAGCACATGTACATACATGGACCTCAT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CAA 90 bp AGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTaGCTTTACACAGGCCAGTTCTTTCCTGGGCTAGGGTGGAATCTC +
Preference number: 2 (lower is better)
Translates to: RLGCQRNFWRGMTWV*LYTGQFFPGLGWNL
Trigger: GAGATTCCACCCTAGCCCAGGAAAGAACTGGCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGCCTAGTGAGGAGGAATaGTGTACTGTACTGAAAACT +
Preference number: 2 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMPSEEE*CTVLKT
Trigger: AGTTTTCAGTACAGTACATCATTCCTCCTCACTAGG...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGAAAACTGAGACTTCATaGGGGGTCTTCTTAAATTGG +
Preference number: 2 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMKTETS*GVFLNW
Trigger: CCAATTTAAGAAGACCCCTCATGAAGTCTCAGTTTT...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTTACTGTACTGAAAACTaGGACTTCATGAGGGGTCTT +
Preference number: 2 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFAYCTEN*DFMRGL
Trigger: AAGACCCCTCATGAAGTCTCAGTTTTCAGTACAGTA...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTCCTAGTGAGGAGGAATaGTGTACTGTACTGAAAACT +
Preference number: 2 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFAPSEEE*CTVLKT
Trigger: AGTTTTCAGTACAGTACATCATTCCTCCTCACTAGG...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGTACAACATGGACTTCTaGATGAGGTCCATGTATGTA +
Preference number: 2 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMYNMDF*MRSMYV
Trigger: TACATACATGGACCTCATTCAGAAGTCCATGTTGTA...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR GCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCAGTGATCTTGGCTCACTaGAATCTCCGCCTCCCGGGT +
Preference number: 2 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISVILAH*NLRLPG
Trigger: ACCCGGGAGGCGGAGATTGCAGTGAGCCAAGATCAC...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR GCA 90 bp TTTTACTCTTGGAAAGGTCTTCCAGGTTTGGTGTATTCTAAGCAGCCAGTAGAGGTGATCTTGGCTCACTaGAATCTCCGCCTCCCGGGT +
Preference number: 2 (lower is better)
Translates to: FYSWKGLPGLVYSKQPVEVILAH*NLRLPG
Trigger: ACCCGGGAGGCGGAGATTGCAGTGAGCCAAGATCAC...CTCTACTGGCTGCTTAGAATACACCAAACCTGGAAGACCTTTCCAAGAGTAAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR GCA 90 bp ATCCTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCATATCTGACCACTGTTaGCTGTCCACTTGCCATTCC +
Preference number: 2 (lower is better)
Translates to: ILSVHLPCLCLAVASDRSISDHC*LSTCHS
Trigger: GGAATGGCAAGTGGACAGGCAACAGTGGTCAGATAT...GGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR GCA 90 bp GAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAGATTCCTTCAGCCTCTAAATaGCCCAACTGGAGCTTCCAA +
Preference number: 2 (lower is better)
Translates to: ECASALFMLGSSIRQIQIPSASK*PNWSFQ
Trigger: TTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGG...AATCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR CCA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTGAAAATGGGCAGCTCTaGGTCCTTAATGATACCAAT +
Preference number: 2 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFAENGQL*VLNDTN
Trigger: ATTGGTATCATTAAGGACCCAGAGCTGCCCATTTTC...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACAGGCCAGTTCTTTCCTaGGCTAGGGTGGAATCTCTG +
Preference number: 2 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNRPVLS*ARVESL
Trigger: CAGAGATTCCACCCTAGCCCAGGAAAGAACTGGCCT...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTAAAACTGAGACTTCATaGGGGGTCTTCTTAAATTGG +
Preference number: 2 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFAKTETS*GVFLNW
Trigger: CCAATTTAAGAAGACCCCTCATGAAGTCTCAGTTTT...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGAATGATGTACTGTACTaGAAACTGAGACTTCATGAG +
Preference number: 2 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMNDVLY*KLRLHE
Trigger: CTCATGAAGTCTCAGTTTTCAGTACAGTACATCATT...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CAA 90 bp AAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTaGAACTGTTGTATTAATGTGTTCCTGGCTCTAGAGGCCACTCCT +
Preference number: 2 (lower is better)
Translates to: KIPRIKRFVPDLVLR*NCCINVFLALEATP
Trigger: AGGAGTGGCCTCTAGAGCCAGGAACACATTAATACAACAGTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTAATGATGTACTGTACTaGAAACTGAGACTTCATGAG +
Preference number: 2 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFANDVLY*KLRLHE
Trigger: CTCATGAAGTCTCAGTTTTCAGTACAGTACATCATT...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACCTAGGGTGGAATCTCTaGGAACAGAGGACTGAGATA +
Preference number: 2 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNLGWNL*EQRTEI
Trigger: TATCTCAGTCCTCTGTTCCCAGAGATTCCACCCTAG...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp ATCCTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCGGAGTGACTGAAGTCTaGCCTTTAAGACATTGTGAA +
Preference number: 2 (lower is better)
Translates to: ILSVHLPCLCLAVASDRSGVTEV*PLRHCE
Trigger: TTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCC...GGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR TCA 90 bp CATCCTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAATTCAACAATGAGTaGATCAAAGTCTCTGGGTCT +
Preference number: 2 (lower is better)
Translates to: HPECASALFMLGSSIRQIQFNNE*IKVSGS
Trigger: AGACCCAGAGACTTTGATTCACTCATTGTTGAATTG...GATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR TCA 90 bp ATCCTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCGCAACAATTCAACAATaGGTGAATCAAAGTCTCTGG +
Preference number: 2 (lower is better)
Translates to: ILSVHLPCLCLAVASDRSATIQQ*VNQSLW
Trigger: CCAGAGACTTTGATTCACTCATTGTTGAATTGTTGC...GGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR GCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTTCAAGCAATTCTCCTaGCTCAGTCTCCCAAGTAGC +
Preference number: 2 (lower is better)
Translates to: SGNRGLRYILCLGICLEQFKQFS*LSLPSS
Trigger: GCTACTTGGGAGACTGAGGCAGGAGAATTGCTTGAA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp GAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAGATTCCAGCTGTGAAACCTTaGGCAAATTACCTAGCTTTT +
Preference number: 2 (lower is better)
Translates to: ECASALFMLGSSIRQIQIPAVKP*ANYLAF
Trigger: AAAAGCTAGGTAATTTGCCCAAGGTTTCACAGCTGG...AATCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR TCA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACACATGGACTTCTGAATaGGGTCCATGTATGTACATG +
Preference number: 2 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNTWTSE*GPCMYM
Trigger: CATGTACATACATGGACCTCATTCAGAAGTCCATGT...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCTCGTTATACCAGCTGTaGAACCTTGGGCAAATTACC +
Preference number: 2 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFSLYQL*NLGQIT
Trigger: GGTAATTTGCCCAAGGTTTCACAGCTGGTATAACGA...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR-3UTR GCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCATTCAAGCAATTCTCCTaGCTCAGTCTCCCAAGTAGC +
Preference number: 2 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISFKQFS*LSLPSS
Trigger: GCTACTTGGGAGACTGAGGCAGGAGAATTGCTTGAA...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR GCA 90 bp CATCCTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCAAAGTCTCTGGCTCTTaGATTGTAGATCAGAACAAA +
Preference number: 2 (lower is better)
Translates to: HPECASALFMLGSSIRQIKVSGS*IVDQNK
Trigger: TTTGTTCTGATCTACAATGCAAGAGCCAGAGACTTT...GATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGATG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR CCA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACCTGATCTCGCAGATGTaGGTTAAATCCCATTTAGAG +
Preference number: 2 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNLISQM*VKSHLE
Trigger: CTCTAAATGGGATTTAACCCACATCTGCGAGATCAG...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp CATCCTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAAAACAAAAGTCTCTaGCTCTTGCATTGTAGATCA +
Preference number: 2 (lower is better)
Translates to: HPECASALFMLGSSIRQIQNKSL*LLHCRS
Trigger: TGATCTACAATGCAAGAGCCAGAGACTTTTGTTTTG...GATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGATG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR CAA 90 bp GAAATAGTTGTCAGTGACTGTAGGATCTTGTGGTTCAGTGACATCTaGGCATGTGAACTTGTCCCAACCAATTGTCAACCAAGACGGAAT +
Preference number: 2 (lower is better)
Translates to: EIVVSDCRILWFSDI*ACELVPTNCQPRRN
Trigger: ATTCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCACATGCCAAGATGTCACTGAACCACAAGATCCTACAGTCACTGACAACTATTTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
3UTR-3UTR TCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGAAGATATGGCCTCAGTaGTTTCCTCTTAGCATAACG +
Preference number: 2 (lower is better)
Translates to: SGNRGLRYILCLGICLEQKIWPQ*FPLSIT
Trigger: CGTTATGCTAAGAGGAAATCACTGAGGCCATATCTT...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCCAGCTGTGAAACCTTaGGCAAATTACCTAGCTTTT +
Preference number: 2 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFPAVKP*ANYLAF
Trigger: AAAAGCTAGGTAATTTGCCCAAGGTTTCACAGCTGG...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR-3UTR CCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCGGAGTGACTGAAGTCTaGCCTTTAAGACATTGTGAA +
Preference number: 2 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFGVTEV*PLRHCE
Trigger: TTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCC...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR CAA 90 bp AATCTCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTaGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTC +
Preference number: 2 (lower is better)
Translates to: NLWEQRTEIHTVFRH*FGAAGRTLFLISHF
Trigger: GAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGAGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CAA 90 bp GTGACTGTAGGATCTTGTGGTTCAGTGACATCTTGGCATGTGAACTaGTCCCAACCAATTGTCAACCAAGACGGAATTATTCATTGGTTT +
Preference number: 2 (lower is better)
Translates to: VTVGSCGSVTSWHVN*SQPIVNQDGIIHWF
Trigger: AAACCAATGAATAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCACATGCCAAGATGTCACTGAACCACAAGATCCTACAGTCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
3UTR-3UTR TCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCAACATGGACTTCTGAATaGGGTCCATGTATGTACATG +
Preference number: 2 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISTWTSE*GPCMYM
Trigger: CATGTACATACATGGACCTCATTCAGAAGTCCATGT...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGCAATTCAACAATGAGTaGATCAAAGTCTCTGGGTCT +
Preference number: 2 (lower is better)
Translates to: SSHFILQPLNAPTGASKWQFNNE*IKVSGS
Trigger: AGACCCAGAGACTTTGATTCACTCATTGTTGAATTG...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR-3UTR CCA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTACTGATCTCGCAGATGTaGGTTAAATCCCATTTAGAG +
Preference number: 2 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLLISQM*VKSHLE
Trigger: CTCTAAATGGGATTTAACCCACATCTGCGAGATCAG...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCATTGATAGTGGCAGACTaGGATTTTACTCTTGGAAAG +
Preference number: 2 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISLIVAD*DFTLGK
Trigger: CTTTCCAAGAGTAAAATCCCAGTCTGCCACTATCAA...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAAACAAAAGTCTCTaGCTCTTGCATTGTAGATCA +
Preference number: 2 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFQNKSL*LLHCRS
Trigger: TGATCTACAATGCAAGAGCCAGAGACTTTTGTTTTG...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR-3UTR CCA 90 bp TTTTACTCTTGGAAAGGTCTTCCAGGTTTGGTGTATTCTAAGCAGCCAGTAGAGTTGAAGCCAAATATCTaGAGAAGTGTCCAATTCCTT +
Preference number: 2 (lower is better)
Translates to: FYSWKGLPGLVYSKQPVELKPNI*RSVQFL
Trigger: AAGGAATTGGACACTTCTCCAGATATTTGGCTTCAA...CTCTACTGGCTGCTTAGAATACACCAAACCTGGAAGACCTTTCCAAGAGTAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTATTGAAGCCAAATATCTaGAGAAGTGTCCAATTCCTT +
Preference number: 2 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLLKPNI*RSVQFL
Trigger: AAGGAATTGGACACTTCTCCAGATATTTGGCTTCAA...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCAAGGTCTTCCAGGTTTaGTGTATTCTAAGCAGCCAG +
Preference number: 2 (lower is better)
Translates to: TFLSVIASLLEQRENGQLKVFQV*CILSSQ
Trigger: CTGGCTGCTTAGAATACACCAAACCTGGAAGACCTT...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp ATGTGTTATTCTCAGAGTCAATACCACAGGAAGCCTTGTAAAAAGATCCTTTGGGTAAAGGTACTCCTTTaGAGCCAAATATCTGGAGAA +
Preference number: 2 (lower is better)
Translates to: MCYSQSQYHRKPCKKILWVKVLL*SQISGE
Trigger: TTCTCCAGATATTTGGCTTCAAAGGAGTACCTTTAC...CCAAAGGATCTTTTTACAAGGCTTCCTGTGGTATTGACTCTGAGAATAACACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCGTAAAGGTACTCCTTTaGAGCCAAATATCTGGAGAA +
Preference number: 2 (lower is better)
Translates to: TFLSVIASLLEQRENGQLVKVLL*SQISGE
Trigger: TTCTCCAGATATTTGGCTTCAAAGGAGTACCTTTAC...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR TCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCGTGCTGAGTCTACTATaGACACAAGTAGTAAAAGTG +
Preference number: 2 (lower is better)
Translates to: TFLSVIASLLEQRENGQLVLSLL*TQVVKV
Trigger: CACTTTTACTACTTGTGTTCATAGTAGACTCAGCAC...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR GCA 90 bp ATGTTCAGCAACAATTCAACAATGAGTGAATCAAAGTCTCTGGGTCTCCAGAATAAAGTCTCTGGCTCTTaGATTGTAGATCAGAACAAA +
Preference number: 2 (lower is better)
Translates to: MFSNNSTMSESKSLGLQNKVSGS*IVDQNK
Trigger: TTTGTTCTGATCTACAATGCAAGAGCCAGAGACTTT...ATTCTGGAGACCCAGAGACTTTGATTCACTCATTGTTGAATTGTTGCTGAACAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR-3UTR CAA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGTGTTTAGGCATTTGTTaGGAGCAGCAGGGAGGACCC +
Preference number: 3 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMCLGIC*EQQGGP
Trigger: GGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACA...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CCA 72 bp ACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTaGAGGGGGATGACTTGGGTTTTGCTTTACACAGGC +
Preference number: 3 (lower is better)
Translates to: TLRVRLGCQRNF*RGMTWVLLYTG
Trigger: GCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACTGCAACGGCGTGATCTaGGCTCACTGCAATCTCCGC +
Preference number: 3 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNCNGVI*AHCNLR
Trigger: GCGGAGATTGCAGTGAGCCAAGATCACGCCGTTGCA...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGAAAGGTCTTCCAGGTTaGGTGTATTCTAAGCAGCCA +
Preference number: 3 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMKGLPG*VYSKQP
Trigger: TGGCTGCTTAGAATACACCAAACCTGGAAGACCTTT...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CCA 72 bp CTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTaGGTTTTGCTTTACACAGGCCAGTTCTTTCCTGGG +
Preference number: 3 (lower is better)
Translates to: LGCQRNFWRGMT*VLLYTGQFFPG
Trigger: CCCAGGAAAGAACTGGCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR TCA 72 bp TCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATaGCTTGGGTTTTGCTTTACACAGGCCAGTTCTTTC +
Preference number: 3 (lower is better)
Translates to: SGLAAREISGGG*LGFCFTQASSF
Trigger: GAAAGAACTGGCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR GCA 72 bp TTAAAGCAAAGTGGAACCCTTAGGGTCAGGCTTGGCTaGCAGAGAAATTTCTGGAGGGGGATGACTTGGGTT +
Preference number: 3 (lower is better)
Translates to: LKQSGTLRVRLG*QRNFWRGMTWV
Trigger: AACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACTTTGCTTTAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR GCA 72 bp GGTGACTTCATCCTGAGTGTGCATCTGCCCTGTTTATaGTTGGCAGTAGCATCAGACAGATCCAGATTGTGG +
Preference number: 3 (lower is better)
Translates to: GDFILSVHLPCL*LAVASDRSRLW
Trigger: CCACAATCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGATGAAGTCACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR CAA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGTTAGACATACTGTGTTaGGATCTACCCTCTTACTTA +
Preference number: 3 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMLDILC*DLPSYL
Trigger: TAAGTAAGAGGGTAGATCCAAACACAGTATGTCTAA...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp CTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAGAACCAGCTGTGAAACCTaGGGCAAATTACCTAGCTTT +
Preference number: 3 (lower is better)
Translates to: LSVHLPCLCLAVASDRSRTSCET*GKLPSF
Trigger: AAAGCTAGGTAATTTGCCCAAGGTTTCACAGCTGGT...TCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR CAA 90 bp CTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAGAAAAAGTCTCTGGCTCTaGCATTGTAGATCAGAACAA +
Preference number: 3 (lower is better)
Translates to: LSVHLPCLCLAVASDRSRKSLWL*HCRSEQ
Trigger: TTGTTCTGATCTACAATGCAAGAGCCAGAGACTTTT...TCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000504190.5
3UTR-3UTR CAA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTTGGGGTTTCACCATCTaGGCCAGGCTGGTTTTGAAC +
Preference number: 3 (lower is better)
Translates to: VWSSREDPIFNLTFLSVIWGFTI*ARLVLN
Trigger: GTTCAAAACCAGCCTGGCCAAGATGGTGAAACCCCA...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCACCAGCTGTGAAACCTaGGGCAAATTACCTAGCTTT +
Preference number: 3 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFTSCET*GKLPSF
Trigger: AAAGCTAGGTAATTTGCCCAAGGTTTCACAGCTGGT...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR CCA 72 bp TCAGTGACTGTAGGATCTTGTGGTTCAGTGACATCTTaGCATGTGAACTTGTCCCAACCAATTGTCAACCAA +
Preference number: 3 (lower is better)
Translates to: SVTVGSCGSVTS*HVNLSQPIVNQ
Trigger: TTGGTTGACAATTGGTTGGGACAAGTTCACATGCCAAGATGTCACTGAACCACAAGATCCTACAGTCACTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
3UTR CCA 72 bp CCCCAACTGGAGCTTCCAAATGGAGTGACTGAAGTCTaGCCTTTAAGACATTGTGAATGTTCAGCAACAATT +
Preference number: 3 (lower is better)
Translates to: PQLELPNGVTEV*PLRHCECSATI
Trigger: AATTGTTGCTGAACATTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGGAAGCTCCAGTTGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR-3UTR CAA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGAGTAAAGGTACTCCTTaGAAGCCAAATATCTGGAGA +
Preference number: 3 (lower is better)
Translates to: SGNRGLRYILCLGICLEQSKGTP*KPNIWR
Trigger: TCTCCAGATATTTGGCTTCAAAGGAGTACCTTTACT...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACCTTCTAAGTAGAGTGTaGCTTTGGCAAATGGTTTTT +
Preference number: 3 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNLLSRV*LWQMVF
Trigger: AAAAACCATTTGCCAAAGCAACACTCTACTTAGAAG...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACTTAGACATACTGTGTTaGGATCTACCCTCTTACTTA +
Preference number: 3 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNLDILC*DLPSYL
Trigger: TAAGTAAGAGGGTAGATCCAAACACAGTATGTCTAA...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTGTGACTGTGGCAATTTaGATAGTGGCAGACTGGGAT +
Preference number: 3 (lower is better)
Translates to: VWSSREDPIFNLTFLSVIVTVAI*IVADWD
Trigger: ATCCCAGTCTGCCACTATCAAAATTGCCACAGTCAC...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTAAGTAAAGGTACTCCTTaGAAGCCAAATATCTGGAGA +
Preference number: 3 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLSKGTP*KPNIWR
Trigger: TCTCCAGATATTTGGCTTCAAAGGAGTACCTTTACT...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCGTGACTGTGGCAATTTaGATAGTGGCAGACTGGGAT +
Preference number: 3 (lower is better)
Translates to: TFLSVIASLLEQRENGQLVTVAI*IVADWD
Trigger: ATCCCAGTCTGCCACTATCAAAATTGCCACAGTCAC...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CCA 72 bp GCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCTaGGTCCTTAATGATACCAATATTTTGCACACAGTT +
Preference number: 3 (lower is better)
Translates to: ASLLEQRENGQL*VLNDTNILHTV
Trigger: AACTGTGTGCAAAATATTGGTATCATTAAGGACCCAGAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR-3UTR CAA 90 bp ATGTTCAGCAACAATTCAACAATGAGTGAATCAAAGTCTCTGGGTCTCCAGAATAAAAGTCTCTGGCTCTaGCATTGTAGATCAGAACAA +
Preference number: 3 (lower is better)
Translates to: MFSNNSTMSESKSLGLQNKSLWL*HCRSEQ
Trigger: TTGTTCTGATCTACAATGCAAGAGCCAGAGACTTTT...ATTCTGGAGACCCAGAGACTTTGATTCACTCATTGTTGAATTGTTGCTGAACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR TCA 72 bp TTAAGACATTGTGAATGTTCAGCAACAATTCAACAATaGGTGAATCAAAGTCTCTGGGTCTCCAGAATAAAT +
Preference number: 3 (lower is better)
Translates to: LRHCECSATIQQ*VNQSLWVSRIN
Trigger: ATTTATTCTGGAGACCCAGAGACTTTGATTCACTCATTGTTGAATTGTTGCTGAACATTCACAATGTCTTAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR GCA 90 bp CCACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCAGACGGAGACTGCGTCTaGCTTCGCTTCCGCCTCGTA +
Preference number: 4 (lower is better)
Translates to: PLHSSLGDGVMSRDCATADGDCV*LRFRLV
Trigger: TACGAGGCGGAAGCGAAGGCAGACGCAGTCTCCGTC...TGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507557.5
CDS-3UTR GCA 90 bp CCACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCAGTCAACGACGGAGACTaGGTCTGCCTTCGCTTCCGC +
Preference number: 4 (lower is better)
Translates to: PLHSSLGDGVMSRDCATAVNDGD*VCLRFR
Trigger: GCGGAAGCGAAGGCAGACGCAGTCTCCGTCGTTGAC...TGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507557.5
CDS-3UTR GCA 90 bp ACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACTGTAGTGAGCCGAGATTaGGCCACTGCATTCCAGCCT +
Preference number: 4 (lower is better)
Translates to: TAFQPGRRSDEPRLRHCTVVSRD*ATAFQP
Trigger: AGGCTGGAATGCAGTGGCGCAATCTCGGCTCACTAC...AGTGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000507557.5
ENST00000507885.5
CDS-3UTR TCA 90 bp CCACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACAGGAGGCTGAAGCATaGGAATCACTTGAACTTGGG +
Preference number: 4 (lower is better)
Translates to: PLHSSLGDGVMSRDCATAQEAEA*ESLELG
Trigger: CCCAAGTTCAAGTGATTCTCATGCTTCAGCCTCCTG...TGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507885.5
CDS-3UTR TCA 90 bp ACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACTTTGAAGCCAGAAGTTTaGGACCAGCCTGGCCAACAT +
Preference number: 4 (lower is better)
Translates to: TAFQPGRRSDEPRLRHCTLKPEV*DQPGQH
Trigger: ATGTTGGCCAGGCTGGTCTCAAACTTCTGGCTTCAA...AGTGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507885.5
CDS-3UTR GCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGGTGATCTTGGCTCACTaGAATCTCCGCCTCCCGGGT +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMVILAH*NLRLPG
Trigger: ACCCGGGAGGCGGAGATTGCAGTGAGCCAAGATCAC...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp ACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACTATATCTGACCACTGTTaGCTGTCCACTTGCCATTCC +
Preference number: 4 (lower is better)
Translates to: TAFQPGRRSDEPRLRHCTISDHC*LSTCHS
Trigger: GGAATGGCAAGTGGACAGGCAACAGTGGTCAGATAT...AGTGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507885.5
CDS-3UTR CCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGAGGCCAGTTCTTTCCTaGGCTAGGGTGGAATCTCTG +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMRPVLS*ARVESL
Trigger: CAGAGATTCCACCCTAGCCCAGGAAAGAACTGGCCT...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTCAAGCGCTTCGTACCTaGCTTGGTGCTGAGGTTGAA +
Preference number: 4 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFAQALRT*LGAEVE
Trigger: TTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTG...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp CCACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCATCTGTCTTCTTAAAGTaGCTCGAACACAACACATCT +
Preference number: 4 (lower is better)
Translates to: PLHSSLGDGVMSRDCATASVFLK*LEHNTS
Trigger: AGATGTGTTGTGTTCGAGGCACTTTAAGAAGACAGA...TGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000507557.5
ENST00000507885.5
CDS-3UTR TCA 90 bp ACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACTGAATTCTTCAATACATaGGGAAGCACCAACAAGATG +
Preference number: 4 (lower is better)
Translates to: TAFQPGRRSDEPRLRHCTEFFNT*GSTNKM
Trigger: CATCTTGTTGGTGCTTCCTCATGTATTGAAGAATTC...AGTGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507885.5
CDS-3UTR TCA 90 bp ACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACTACTTGCCATTCCCTATaGAATGCATTTCTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: TAFQPGRRSDEPRLRHCTTCHSL*NAFLSS
Trigger: AGAAGAGAGAAATGCATTTCATAGGGAATGGCAAGT...AGTGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507885.5
CDS-3UTR TCA 90 bp CCACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCAACAAACATTTCCTCTTaGACATGGATATCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: PLHSSLGDGVMSRDCATATNISS*TWISVG
Trigger: ACCTACAGATATCCATGTTCAAGAGGAAATGTTTGT...TGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGTGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507557.5
CDS-3UTR GCA 90 bp ACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACTTCTGTCTTCTTAAAGTaGCTCGAACACAACACATCT +
Preference number: 4 (lower is better)
Translates to: TAFQPGRRSDEPRLRHCTSVFLK*LEHNTS
Trigger: AGATGTGTTGTGTTCGAGGCACTTTAAGAAGACAGA...AGTGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000507557.5
ENST00000507885.5
CDS-3UTR CCA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTGAGAAGCACATCCAATaGCGGAGCAGCATTTCACCA +
Preference number: 4 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFAEKHIQ*RSSISP
Trigger: TGGTGAAATGCTGCTCCGCCATTGGATGTGCTTCTC...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGTGTTCTATGCTCTCCTaGCAACAGTCCCAACAGAAA +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMCSMLS*QQSQQK
Trigger: TTTCTGTTGGGACTGTTGTCAGGAGAGCATAGAACA...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGCTCCCAAATGCCGGCTaGATTCACATCAAGTCTTTT +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMLPNAG*IHIKSF
Trigger: AAAAGACTTGATGTGAATGCAGCCGGCATTTGGGAG...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACGTGATCTTGGCTCACTaGAATCTCCGCCTCCCGGGT +
Preference number: 4 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNVILAH*NLRLPG
Trigger: ACCCGGGAGGCGGAGATTGCAGTGAGCCAAGATCAC...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp ACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACTCCATTCCCTATGAAATaGATTTCTCTCTTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: TAFQPGRRSDEPRLRHCTPFPMK*ISLFLV
Trigger: AACCAAGAAGAGAGAAATGCATTTCATAGGGAATGG...AGTGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507885.5
CDS-3UTR CCA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTCTAGGGTGGAATCTCTaGGAACAGAGGACTGAGATA +
Preference number: 4 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFALGWNL*EQRTEI
Trigger: TATCTCAGTCCTCTGTTCCCAGAGATTCCACCCTAG...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CAA 72 bp TGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTaGCTTTACACAGGCCAGTTCTTTCCTGGGCTAGGG +
Preference number: 4 (lower is better)
Translates to: CQRNFWRGMTWV*LYTGQFFPGLG
Trigger: CCCTAGCCCAGGAAAGAACTGGCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CAA 72 bp GCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTaGGGTTTTGCTTTACACAGGCCAGTTCTTTCCTGG +
Preference number: 4 (lower is better)
Translates to: AWLPEKFLEGDD*GFALHRPVLSW
Trigger: CCAGGAAAGAACTGGCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGTACTGTACTGAAAACTaGGACTTCATGAGGGGTCTT +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMYCTEN*DFMRGL
Trigger: AAGACCCCTCATGAAGTCTCAGTTTTCAGTACAGTA...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACATGGACTTCTGAATaGGGTCCATGTATGTACATG +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMTWTSE*GPCMYM
Trigger: CATGTACATACATGGACCTCATTCAGAAGTCCATGT...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTATTTCTGGAGGGGGATaGCTTGGGTTTTGCTTTACA +
Preference number: 4 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFAISGGG*LGFCFT
Trigger: TGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAAT...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp CTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAGAAAGGTGACTTCATCCTaGGTGTGCATCTGCCCTGTT +
Preference number: 4 (lower is better)
Translates to: LSVHLPCLCLAVASDRSRKVTSS*VCICPV
Trigger: AACAGGGCAGATGCACACTCAGGATGAAGTCACCTT...TCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS-3UTR CCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGCTGATCTCGCAGATGTaGGTTAAATCCCATTTAGAG +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMLISQM*VKSHLE
Trigger: CTCTAAATGGGATTTAACCCACATCTGCGAGATCAG...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGGAAAATGGGCAGCTCTaGGTCCTTAATGATACCAAT +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMENGQL*VLNDTN
Trigger: ATTGGTATCATTAAGGACCCAGAGCTGCCCATTTTC...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGGTAAAGGTACTCCTTTaGAGCCAAATATCTGGAGAA +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMVKVLL*SQISGE
Trigger: TTCTCCAGATATTTGGCTTCAAAGGAGTACCTTTAC...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGGTGCTGAGTCTACTATaGACACAAGTAGTAAAAGTG +
Preference number: 4 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMVLSLL*TQVVKV
Trigger: CACTTTTACTACTTGTGTTCATAGTAGACTCAGCAC...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp CATCCTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCATATCTGACCACTGTTaGCTGTCCACTTGCCATTCC +
Preference number: 4 (lower is better)
Translates to: HPECASALFMLGSSIRQIISDHC*LSTCHS
Trigger: GGAATGGCAAGTGGACAGGCAACAGTGGTCAGATAT...GATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGATG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS-3UTR TCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGCAAGCGCTTCGTACCTaGCTTGGTGCTGAGGTTGAA +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQQALRT*LGAEVE
Trigger: TTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTG...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp GAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAGATTCATCTGCCCTGTTTATaGTTGGCAGTAGCATCAGAC +
Preference number: 4 (lower is better)
Translates to: ECASALFMLGSSIRQIQIHLPCL*LAVASD
Trigger: GTCTGATGCTACTGCCAAGCATAAACAGGGCAGATG...AATCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS-3UTR TCA 90 bp GTGAACTTGTCCCAACCAATTGTCAACCAAGACGGAATTATTCATTGGTTTGTCAGGTCGAGGCTACAGTaGGCTGATGGTACCACTGCA +
Preference number: 4 (lower is better)
Translates to: VNLSQPIVNQDGIIHWFVRSRLQ*ADGTTA
Trigger: TGCAGTGGTACCATCAGCTCACTGTAGCCTCGACCT...GACAAACCAATGAATAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR GCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCCTTCAGCCTCTAAATaGCCCAACTGGAGCTTCCAA +
Preference number: 4 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFPSASK*PNWSFQ
Trigger: TTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGG...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR CCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTGGAGGGGGATGACTTaGGTTTTGCTTTACACAGGC +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQWRGMT*VLLYTG
Trigger: GCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CAA 72 bp CGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTaGAACTGTTGTATTAATGTGTTCCTGGCTCTAGAG +
Preference number: 4 (lower is better)
Translates to: RIKRFVPDLVLR*NCCINVFLALE
Trigger: CTCTAGAGCCAGGAACACATTAATACAACAGTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp CATCCTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCGCTTCAGACACAAGATaGGTTCACATTTTATCCTTC +
Preference number: 4 (lower is better)
Translates to: HPECASALFMLGSSIRQIASDTR*VHILSF
Trigger: GAAGGATAAAATGTGAACTCATCTTGTGTCTGAAGC...GATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGATG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS-3UTR CCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCAGAGAAGCACATCCAATaGCGGAGCAGCATTTCACCA +
Preference number: 4 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISEKHIQ*RSSISP
Trigger: TGGTGAAATGCTGCTCCGCCATTGGATGTGCTTCTC...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGCTAGGGTGGAATCTCTaGGAACAGAGGACTGAGATA +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQLGWNL*EQRTEI
Trigger: TATCTCAGTCCTCTGTTCCCAGAGATTCCACCCTAG...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTGCCAGAGAAATTTCTaGAGGGGGATGACTTGGGTT +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQCQRNF*RGMTWV
Trigger: AACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
3UTR CAA 72 bp GTCAGTGACTGTAGGATCTTGTGGTTCAGTGACATCTaGGCATGTGAACTTGTCCCAACCAATTGTCAACCA +
Preference number: 4 (lower is better)
Translates to: VSDCRILWFSDI*ACELVPTNCQP
Trigger: TGGTTGACAATTGGTTGGGACAAGTTCACATGCCAAGATGTCACTGAACCACAAGATCCTACAGTCACTGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR TCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTGTTCTATGCTCTCCTaGCAACAGTCCCAACAGAAA +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQCSMLS*QQSQQK
Trigger: TTTCTGTTGGGACTGTTGTCAGGAGAGCATAGAACA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACAAGATATGGCCTCAGTaGTTTCCTCTTAGCATAACG +
Preference number: 4 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNKIWPQ*FPLSIT
Trigger: CGTTATGCTAAGAGGAAATCACTGAGGCCATATCTT...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAGATTACTTGCCATTCCCTATaGAATGCATTTCTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: ECASALFMLGSSIRQIQITCHSL*NAFLSS
Trigger: AGAAGAGAGAAATGCATTTCATAGGGAATGGCAAGT...AATCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS-3UTR TCA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGTCGTTATACCAGCTGTaGAACCTTGGGCAAATTACC +
Preference number: 4 (lower is better)
Translates to: SSHFILQPLNAPTGASKWSLYQL*NLGQIT
Trigger: GGTAATTTGCCCAAGGTTTCACAGCTGGTATAACGA...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR TCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCTCCAAATGGAGTGACTaGAGTCTGGCCTTTAAGACA +
Preference number: 4 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFSKWSD*SLAFKT
Trigger: TGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGGA...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR TCA 90 bp GTGAACTTGTCCCAACCAATTGTCAACCAAGACGGAATTATTCATTGGTTTGTCGCACATCAGCCTGGGTaGCAGAGTAAGACCCTTATA +
Preference number: 4 (lower is better)
Translates to: VNLSQPIVNQDGIIHWFVAHQPG*QSKTLI
Trigger: TATAAGGGTCTTACTCTGTCACCCAGGCTGATGTGC...GACAAACCAATGAATAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR GCA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGCTCCCAAATGCCGGCTaGATTCACATCAAGTCTTTT +
Preference number: 4 (lower is better)
Translates to: SSHFILQPLNAPTGASKWLPNAG*IHIKSF
Trigger: AAAAGACTTGATGTGAATGCAGCCGGCATTTGGGAG...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR GCA 90 bp CCAAATGGAGTGACTGAAGTCTGGCCTTTAAGACATTGTGAATGTTCAGCAACAATATCTGACCACTGTTaGCTGTCCACTTGCCATTCC +
Preference number: 4 (lower is better)
Translates to: PNGVTEVWPLRHCECSATISDHC*LSTCHS
Trigger: GGAATGGCAAGTGGACAGGCAACAGTGGTCAGATAT...TGTTGCTGAACATTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR CCA 90 bp TGTAGGATCTTGTGGTTCAGTGACATCTTGGCATGTGAACTTGTCCCAACCAATGACTGTAGGATCTTGTaGTTCAGTGACATCTTGGCA +
Preference number: 4 (lower is better)
Translates to: CRILWFSDILACELVPTNDCRIL*FSDILA
Trigger: TGCCAAGATGTCACTGAACCACAAGATCCTACAGTC...ATTGGTTGGGACAAGTTCACATGCCAAGATGTCACTGAACCACAAGATCCTACA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR TCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTCTGTGGGGAATACGTaGAATGTCAGTCCTTTTAAC +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQSVGNT*NVSPFN
Trigger: GTTAAAAGGACTGACATTTCACGTATTCCCCACAGA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCTCTGTGGGGAATACGTaGAATGTCAGTCCTTTTAAC +
Preference number: 4 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFSVGNT*NVSPFN
Trigger: GTTAAAAGGACTGACATTTCACGTATTCCCCACAGA...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000507556.5
CDS-3UTR TCA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACTTGCTGTTTCTTGGCTaGTCAGACATTCATCCTTTA +
Preference number: 4 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNLLFLG*SDIHPL
Trigger: TAAAGGATGAATGTCTGATCAGCCAAGAAACAGCAA...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGCCTAGTGAGGAGGAATaGTGTACTGTACTGAAAACT +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQPSEEE*CTVLKT
Trigger: AGTTTTCAGTACAGTACATCATTCCTCCTCACTAGG...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACGTGAAAAAGAAGTGCTaGGTCTACTATGAACACAAG +
Preference number: 4 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNVKKKC*VYYEHK
Trigger: CTTGTGTTCATAGTAGACTCAGCACTTCTTTTTCAC...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp TTTTACTCTTGGAAAGGTCTTCCAGGTTTGGTGTATTCTAAGCAGCCAGTAGAGATTTCTGGAGGGGGATaGCTTGGGTTTTGCTTTACA +
Preference number: 4 (lower is better)
Translates to: FYSWKGLPGLVYSKQPVEISGGG*LGFCFT
Trigger: TGTAAAGCAAAACCCAAGTCATCCCCCTCCAGAAAT...CTCTACTGGCTGCTTAGAATACACCAAACCTGGAAGACCTTTCCAAGAGTAAAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp CCAAATGGAGTGACTGAAGTCTGGCCTTTAAGACATTGTGAATGTTCAGCAACATCCAAATGGAGTGACTaGAGTCTGGCCTTTAAGACA +
Preference number: 4 (lower is better)
Translates to: PNGVTEVWPLRHCECSATSKWSD*SLAFKT
Trigger: TGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGGA...TGTTGCTGAACATTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR GCA 90 bp CCAAATGGAGTGACTGAAGTCTGGCCTTTAAGACATTGTGAATGTTCAGCAACACTCCCAAATGCCGGCTaGATTCACATCAAGTCTTTT +
Preference number: 4 (lower is better)
Translates to: PNGVTEVWPLRHCECSATLPNAG*IHIKSF
Trigger: AAAAGACTTGATGTGAATGCAGCCGGCATTTGGGAG...TGTTGCTGAACATTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR CCA 90 bp ATGTTCAGCAACAATTCAACAATGAGTGAATCAAAGTCTCTGGGTCTCCAGAATGAGAAGCACATCCAATaGCGGAGCAGCATTTCACCA +
Preference number: 4 (lower is better)
Translates to: MFSNNSTMSESKSLGLQNEKHIQ*RSSISP
Trigger: TGGTGAAATGCTGCTCCGCCATTGGATGTGCTTCTC...ATTCTGGAGACCCAGAGACTTTGATTCACTCATTGTTGAATTGTTGCTGAACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507556.5
CDS-3UTR CCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGATTGTAGTTAGTGGCTaGAACGGTTTTGAGGGTGAA +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQIVVSG*NGFEGE
Trigger: TTCACCCTCAAAACCGTTCCAGCCACTAACTACAAT...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000311638.7
CDS-3UTR CCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCATTGTAGTTAGTGGCTaGAACGGTTTTGAGGGTGAA +
Preference number: 4 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFIVVSG*NGFEGE
Trigger: TTCACCCTCAAAACCGTTCCAGCCACTAACTACAAT...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000507556.5
CDS-3UTR CCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCAAAGGTCTTCCAGGTTTaGTGTATTCTAAGCAGCCAG +
Preference number: 4 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISKVFQV*CILSSQ
Trigger: CTGGCTGCTTAGAATACACCAAACCTGGAAGACCTT...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCAGGCCAGTTCTTTCCTaGGCTAGGGTGGAATCTCTG +
Preference number: 4 (lower is better)
Translates to: TFLSVIASLLEQRENGQLRPVLS*ARVESL
Trigger: CAGAGATTCCACCCTAGCCCAGGAAAGAACTGGCCT...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGGGAGTGACTGAAGTCTaGCCTTTAAGACATTGTGAA +
Preference number: 4 (lower is better)
Translates to: SSHFILQPLNAPTGASKWGVTEV*PLRHCE
Trigger: TTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCC...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
3UTR CAA 72 bp GGATCTTGTGGTTCAGTGACATCTTGGCATGTGAACTaGTCCCAACCAATTGTCAACCAAGACGGAATTATT +
Preference number: 4 (lower is better)
Translates to: GSCGSVTSWHVN*SQPIVNQDGII
Trigger: AATAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCACATGCCAAGATGTCACTGAACCACAAGATCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR TCA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGCTTTTCCCCTGTAGGTaGTATGGAGAATCAAAGATA +
Preference number: 4 (lower is better)
Translates to: SSHFILQPLNAPTGASKWLFPCR*YGESKI
Trigger: TATCTTTGATTCTCCATATCACCTACAGGGGAAAAG...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000507556.5
CDS-3UTR TCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTACAACATGGACTTCTaGATGAGGTCCATGTATGTA +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQYNMDF*MRSMYV
Trigger: TACATACATGGACCTCATTCAGAAGTCCATGTTGTA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCAAAGATATGGCCTCAGTaGTTTCCTCTTAGCATAACG +
Preference number: 4 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISKIWPQ*FPLSIT
Trigger: CGTTATGCTAAGAGGAAATCACTGAGGCCATATCTT...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCACTTGCCATTCCCTATaGAATGCATTTCTCTCTTCT +
Preference number: 4 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFTCHSL*NAFLSS
Trigger: AGAAGAGAGAAATGCATTTCATAGGGAATGGCAAGT...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR TCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAATTCAACAATGAGTaGATCAAAGTCTCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFQFNNE*IKVSGS
Trigger: AGACCCAGAGACTTTGATTCACTCATTGTTGAATTG...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR TCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCGCAACAATTCAACAATaGGTGAATCAAAGTCTCTGG +
Preference number: 4 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFATIQQ*VNQSLW
Trigger: CCAGAGACTTTGATTCACTCATTGTTGAATTGTTGC...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR GCA 90 bp GTGAACTTGTCCCAACCAATTGTCAACCAAGACGGAATTATTCATTGGTTTGTCCTCCCAAATGCCGGCTaGATTCACATCAAGTCTTTT +
Preference number: 4 (lower is better)
Translates to: VNLSQPIVNQDGIIHWFVLPNAG*IHIKSF
Trigger: AAAAGACTTGATGTGAATGCAGCCGGCATTTGGGAG...GACAAACCAATGAATAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR GCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTCTGTCTTCTTAAAGTaGCTCGAACACAACACATCT +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQSVFLK*LEHNTS
Trigger: AGATGTGTTGTGTTCGAGGCACTTTAAGAAGACAGA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGTCTGTCTTCTTAAAGTaGCTCGAACACAACACATCT +
Preference number: 4 (lower is better)
Translates to: SSHFILQPLNAPTGASKWSVFLK*LEHNTS
Trigger: AGATGTGTTGTGTTCGAGGCACTTTAAGAAGACAGA...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR GCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCAAGTGTCCAGTCTATTTaGTGTTTCTTGGCTGATCAG +
Preference number: 4 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISSVQSI*CFLADQ
Trigger: CTGATCAGCCAAGAAACAGCAAATAGACTGGACACT...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACTGATCTCGCAGATGTaGGTTAAATCCCATTTAGAG +
Preference number: 4 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISLISQM*VKSHLE
Trigger: CTCTAAATGGGATTTAACCCACATCTGCGAGATCAG...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTTGATAGTGGCAGACTaGGATTTTACTCTTGGAAAG +
Preference number: 4 (lower is better)
Translates to: SGNRGLRYILCLGICLEQLIVAD*DFTLGK
Trigger: CTTTCCAAGAGTAAAATCCCAGTCTGCCACTATCAA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCAGAAAATGGGCAGCTCTaGGTCCTTAATGATACCAAT +
Preference number: 4 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISENGQL*VLNDTN
Trigger: ATTGGTATCATTAAGGACCCAGAGCTGCCCATTTTC...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCTGGAGGGGGATGACTTaGGTTTTGCTTTACACAGGC +
Preference number: 4 (lower is better)
Translates to: TFLSVIASLLEQRENGQLWRGMT*VLLYTG
Trigger: GCCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCA...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTTGCCAGAGAAATTTCTaGAGGGGGATGACTTGGGTT +
Preference number: 4 (lower is better)
Translates to: VWSSREDPIFNLTFLSVICQRNF*RGMTWV
Trigger: AACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCA...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp CCAAATGGAGTGACTGAAGTCTGGCCTTTAAGACATTGTGAATGTTCAGCAACACCAGCTGTGAAACCTTaGGCAAATTACCTAGCTTTT +
Preference number: 4 (lower is better)
Translates to: PNGVTEVWPLRHCECSATPAVKP*ANYLAF
Trigger: AAAAGCTAGGTAATTTGCCCAAGGTTTCACAGCTGG...TGTTGCTGAACATTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR CCA 90 bp TTGGCATGTGAACTTGTCCCAACCAATTGTCAACCAAGACGGAATTATTCATTGGGTTCAGTGACATCTTaGCATGTGAACTTGTCCCAA +
Preference number: 4 (lower is better)
Translates to: LACELVPTNCQPRRNYSLGSVTS*HVNLSQ
Trigger: TTGGGACAAGTTCACATGCCAAGATGTCACTGAACC...CAATGAATAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCACATGCCAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
3UTR CAA 72 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTaGGTGCTGAGGTTGAACTGTTGTATTAATGTGTTC +
Preference number: 4 (lower is better)
Translates to: RKIPRIKRFVPD*VLRLNCCINVF
Trigger: GAACACATTAATACAACAGTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTACTTTTCCCCTGTAGGTaGTATGGAGAATCAAAGATA +
Preference number: 4 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLLFPCR*YGESKI
Trigger: TATCTTTGATTCTCCATATCACCTACAGGGGAAAAG...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000311638.7
CDS-3UTR TCA 90 bp TTTTACTCTTGGAAAGGTCTTCCAGGTTTGGTGTATTCTAAGCAGCCAGTAGAGGAATTCTTCAATACATaGGGAAGCACCAACAAGATG +
Preference number: 4 (lower is better)
Translates to: FYSWKGLPGLVYSKQPVEEFFNT*GSTNKM
Trigger: CATCTTGTTGGTGCTTCCTCATGTATTGAAGAATTC...CTCTACTGGCTGCTTAGAATACACCAAACCTGGAAGACCTTTCCAAGAGTAAAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000311638.7
CDS-3UTR TCA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTAGTGCTGAGTCTACTATaGACACAAGTAGTAAAAGTG +
Preference number: 4 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLVLSLL*TQVVKV
Trigger: CACTTTTACTACTTGTGTTCATAGTAGACTCAGCAC...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGCTGTGTTTCTGTAGGTaGTATGGAGAATCAAAGATA +
Preference number: 4 (lower is better)
Translates to: SSHFILQPLNAPTGASKWLCFCR*YGESKI
Trigger: TATCTTTGATTCTCCATATCACCTACAGAAACACAG...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS-3UTR TCA 90 bp ATGTTCAGCAACAATTCAACAATGAGTGAATCAAAGTCTCTGGGTCTCCAGAATTCGTTATACCAGCTGTaGAACCTTGGGCAAATTACC +
Preference number: 4 (lower is better)
Translates to: MFSNNSTMSESKSLGLQNSLYQL*NLGQIT
Trigger: GGTAATTTGCCCAAGGTTTCACAGCTGGTATAACGA...ATTCTGGAGACCCAGAGACTTTGATTCACTCATTGTTGAATTGTTGCTGAACAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR TCA 90 bp CCAAATGGAGTGACTGAAGTCTGGCCTTTAAGACATTGTGAATGTTCAGCAACACAATTCAACAATGAGTaGATCAAAGTCTCTGGGTCT +
Preference number: 4 (lower is better)
Translates to: PNGVTEVWPLRHCECSATQFNNE*IKVSGS
Trigger: AGACCCAGAGACTTTGATTCACTCATTGTTGAATTG...TGTTGCTGAACATTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR GCA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTCTCCCAAATGCCGGCTaGATTCACATCAAGTCTTTT +
Preference number: 4 (lower is better)
Translates to: VWSSREDPIFNLTFLSVILPNAG*IHIKSF
Trigger: AAAAGACTTGATGTGAATGCAGCCGGCATTTGGGAG...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGCCATTCCCTATGAAATaGATTTCTCTCTTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: SSHFILQPLNAPTGASKWPFPMK*ISLFLV
Trigger: AACCAAGAAGAGAGAAATGCATTTCATAGGGAATGG...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR GCA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCAAAGTCTCTGGCTCTTaGATTGTAGATCAGAACAAA +
Preference number: 4 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFKVSGS*IVDQNK
Trigger: TTTGTTCTGATCTACAATGCAAGAGCCAGAGACTTT...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR CCA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTACTATTTGCTGTTTCTTaGCTGATCAGACATTCATCC +
Preference number: 4 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLLFAVS*LIRHSS
Trigger: GGATGAATGTCTGATCAGCCAAGAAACAGCAAATAG...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGCAAAACAAAAGTCTCTaGCTCTTGCATTGTAGATCA +
Preference number: 4 (lower is better)
Translates to: SSHFILQPLNAPTGASKWQNKSL*LLHCRS
Trigger: TGATCTACAATGCAAGAGCCAGAGACTTTTGTTTTG...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR TCA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTACATCCTTTAATTCCCTaGTTGTCTTCCTCAATGATT +
Preference number: 4 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLHPLIP*LSSSMI
Trigger: AATCATTGAGGAAGACAATCAGGGAATTAAAGGATG...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTACTATGTTCCTGTAGGTaGTATGGAGAATCAAAGATA +
Preference number: 4 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLLCSCR*YGESKI
Trigger: TATCTTTGATTCTCCATATCACCTACAGGAACATAG...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000380837.7
CDS-3UTR TCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCTCTGTGGGGAATACGTaGAATGTCAGTCCTTTTAAC +
Preference number: 4 (lower is better)
Translates to: TFLSVIASLLEQRENGQLSVGNT*NVSPFN
Trigger: GTTAAAAGGACTGACATTTCACGTATTCCCCACAGA...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp ATGTTCAGCAACAATTCAACAATGAGTGAATCAAAGTCTCTGGGTCTCCAGAATGAATTCTTCAATACATaGGGAAGCACCAACAAGATG +
Preference number: 4 (lower is better)
Translates to: MFSNNSTMSESKSLGLQNEFFNT*GSTNKM
Trigger: CATCTTGTTGGTGCTTCCTCATGTATTGAAGAATTC...ATTCTGGAGACCCAGAGACTTTGATTCACTCATTGTTGAATTGTTGCTGAACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507556.5
CDS-3UTR TCA 90 bp GAGGGAAGAATTATTTCCTTGGTAGAAATATCCTTGCAAAAGCCTTCTTCAGTGGAATTCTTCAATACATaGGGAAGCACCAACAAGATG +
Preference number: 4 (lower is better)
Translates to: EGRIISLVEISLQKPSSVEFFNT*GSTNKM
Trigger: CATCTTGTTGGTGCTTCCTCATGTATTGAAGAATTC...CACTGAAGAAGGCTTTTGCAAGGATATTTCTACCAAGGAAATAATTCTTCCCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000508105.5
CDS-3UTR TCA 90 bp ATGTGTTATTCTCAGAGTCAATACCACAGGAAGCCTTGTAAAAAGATCCTTTGGTTGCTGTTTCTTGGCTaGTCAGACATTCATCCTTTA +
Preference number: 4 (lower is better)
Translates to: MCYSQSQYHRKPCKKILWLLFLG*SDIHPL
Trigger: TAAAGGATGAATGTCTGATCAGCCAAGAAACAGCAA...CCAAAGGATCTTTTTACAAGGCTTCCTGTGGTATTGACTCTGAGAATAACACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTGTAAAGGTACTCCTTTaGAGCCAAATATCTGGAGAA +
Preference number: 4 (lower is better)
Translates to: VWSSREDPIFNLTFLSVIVKVLL*SQISGE
Trigger: TTCTCCAGATATTTGGCTTCAAAGGAGTACCTTTAC...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTAAAACTGAGACTTCATaGGGGGTCTTCTTAAATTGG +
Preference number: 4 (lower is better)
Translates to: VWSSREDPIFNLTFLSVIKTETS*GVFLNW
Trigger: CCAATTTAAGAAGACCCCTCATGAAGTCTCAGTTTT...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCACATGGACTTCTGAATaGGGTCCATGTATGTACATG +
Preference number: 4 (lower is better)
Translates to: TFLSVIASLLEQRENGQLTWTSE*GPCMYM
Trigger: CATGTACATACATGGACCTCATTCAGAAGTCCATGT...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp ATGTGTTATTCTCAGAGTCAATACCACAGGAAGCCTTGTAAAAAGATCCTTTGGTACAACATGGACTTCTaGATGAGGTCCATGTATGTA +
Preference number: 4 (lower is better)
Translates to: MCYSQSQYHRKPCKKILWYNMDF*MRSMYV
Trigger: TACATACATGGACCTCATTCAGAAGTCCATGTTGTA...CCAAAGGATCTTTTTACAAGGCTTCCTGTGGTATTGACTCTGAGAATAACACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTGTGAAAAAGAAGTGCTaGGTCTACTATGAACACAAG +
Preference number: 4 (lower is better)
Translates to: VWSSREDPIFNLTFLSVIVKKKC*VYYEHK
Trigger: CTTGTGTTCATAGTAGACTCAGCACTTCTTTTTCAC...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp ATGTTCAGCAACAATTCAACAATGAGTGAATCAAAGTCTCTGGGTCTCCAGAATGCAACAATTCAACAATaGGTGAATCAAAGTCTCTGG +
Preference number: 4 (lower is better)
Translates to: MFSNNSTMSESKSLGLQNATIQQ*VNQSLW
Trigger: CCAGAGACTTTGATTCACTCATTGTTGAATTGTTGC...ATTCTGGAGACCCAGAGACTTTGATTCACTCATTGTTGAATTGTTGCTGAACAT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR TCA 90 bp ATGTTCAGCAACAATTCAACAATGAGTGAATCAAAGTCTCTGGGTCTCCAGAATGCTTCAGACACAAGATaGGTTCACATTTTATCCTTC +
Preference number: 4 (lower is better)
Translates to: MFSNNSTMSESKSLGLQNASDTR*VHILSF
Trigger: GAAGGATAAAATGTGAACTCATCTTGTGTCTGAAGC...ATTCTGGAGACCCAGAGACTTTGATTCACTCATTGTTGAATTGTTGCTGAACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR TCA 90 bp TTGGCATGTGAACTTGTCCCAACCAATTGTCAACCAAGACGGAATTATTCATTGACAAACATTTCCTCTTaGACATGGATATCTGTAGGT +
Preference number: 4 (lower is better)
Translates to: LACELVPTNCQPRRNYSLTNISS*TWISVG
Trigger: ACCTACAGATATCCATGTTCAAGAGGAAATGTTTGT...CAATGAATAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCACATGCCAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR GCA 90 bp AAGACGGAATTATTCATTGGTTTGTCTGTTCAGTGTCTGTATCTAAGTCACCTGTCTGTCTTCTTAAAGTaGCTCGAACACAACACATCT +
Preference number: 4 (lower is better)
Translates to: KTELFIGLSVQCLYLSHLSVFLK*LEHNTS
Trigger: AGATGTGTTGTGTTCGAGGCACTTTAAGAAGACAGA...CAGGTGACTTAGATACAGACACTGAACAGACAAACCAATGAATAATTCCGTCTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR GCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCAGTGTCCAGTCTATTTaGTGTTTCTTGGCTGATCAG +
Preference number: 4 (lower is better)
Translates to: TFLSVIASLLEQRENGQLSVQSI*CFLADQ
Trigger: CTGATCAGCCAAGAAACAGCAAATAGACTGGACACT...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTAATGCTTAAGTTTCTTTaGACTGTCCATTACACTGTA +
Preference number: 4 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLMLKFL*TVHYTV
Trigger: TACAGTGTAATGGACAGTCCAAAGAAACTTAAGCAT...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTCTATTTGCTGTTTCTTaGCTGATCAGACATTCATCC +
Preference number: 4 (lower is better)
Translates to: VWSSREDPIFNLTFLSVILFAVS*LIRHSS
Trigger: GGATGAATGTCTGATCAGCCAAGAAACAGCAAATAG...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp GCATGTGAACTTGTCCCAACCAATTGTCAACCAAGACGGAATTATTCATTGGTTGACGGAATTATTCATTaGTTTGTCTGTTCAGTGTCT +
Preference number: 4 (lower is better)
Translates to: ACELVPTNCQPRRNYSLVDGIIH*FVCSVS
Trigger: AGACACTGAACAGACAAACCAATGAATAATTCCGTC...AACCAATGAATAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCACATGC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR TCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCAAAACTGAGACTTCATaGGGGGTCTTCTTAAATTGG +
Preference number: 4 (lower is better)
Translates to: TFLSVIASLLEQRENGQLKTETS*GVFLNW
Trigger: CCAATTTAAGAAGACCCCTCATGAAGTCTCAGTTTT...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTAATGATGTACTGTACTaGAAACTGAGACTTCATGAG +
Preference number: 4 (lower is better)
Translates to: VWSSREDPIFNLTFLSVINDVLY*KLRLHE
Trigger: CTCATGAAGTCTCAGTTTTCAGTACAGTACATCATT...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp ATGTGTTATTCTCAGAGTCAATACCACAGGAAGCCTTGTAAAAAGATCCTTTGGAATGATGTACTGTACTaGAAACTGAGACTTCATGAG +
Preference number: 4 (lower is better)
Translates to: MCYSQSQYHRKPCKKILWNDVLY*KLRLHE
Trigger: CTCATGAAGTCTCAGTTTTCAGTACAGTACATCATT...CCAAAGGATCTTTTTACAAGGCTTCCTGTGGTATTGACTCTGAGAATAACACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp GAGGGAAGAATTATTTCCTTGGTAGAAATATCCTTGCAAAAGCCTTCTTCAGTGGATAAATGCTTAATGTaGTGGATACCCTATTTACCC +
Preference number: 4 (lower is better)
Translates to: EGRIISLVEISLQKPSSVDKCLM*WIPYLP
Trigger: GGGTAAATAGGGTATCCATCACATTAAGCATTTATC...CACTGAAGAAGGCTTTTGCAAGGATATTTCTACCAAGGAAATAATTCTTCCCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000508105.5
CDS-3UTR GCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCTCTGTCTTCTTAAAGTaGCTCGAACACAACACATCT +
Preference number: 4 (lower is better)
Translates to: TFLSVIASLLEQRENGQLSVFLK*LEHNTS
Trigger: AGATGTGTTGTGTTCGAGGCACTTTAAGAAGACAGA...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR GCA 90 bp TCCTTGCAAAAGCCTTCTTCAGTGAACTACATATGTAACCAAAGGATTAACTACTCTGTCTTCTTAAAGTaGCTCGAACACAACACATCT +
Preference number: 4 (lower is better)
Translates to: SLQKPSSVNYICNQRINYSVFLK*LEHNTS
Trigger: AGATGTGTTGTGTTCGAGGCACTTTAAGAAGACAGA...GTAGTTAATCCTTTGGTTACATATGTAGTTCACTGAAGAAGGCTTTTGCAAGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000508105.5
CDS-3UTR GCA 90 bp ATGTTCAGCAACAATTCAACAATGAGTGAATCAAAGTCTCTGGGTCTCCAGAATCCATTCCCTATGAAATaGATTTCTCTCTTCTTGGTT +
Preference number: 4 (lower is better)
Translates to: MFSNNSTMSESKSLGLQNPFPMK*ISLFLV
Trigger: AACCAAGAAGAGAGAAATGCATTTCATAGGGAATGG...ATTCTGGAGACCCAGAGACTTTGATTCACTCATTGTTGAATTGTTGCTGAACAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR CCA 90 bp ATGTGTTATTCTCAGAGTCAATACCACAGGAAGCCTTGTAAAAAGATCCTTTGGTTGAAGCCAAATATCTaGAGAAGTGTCCAATTCCTT +
Preference number: 4 (lower is better)
Translates to: MCYSQSQYHRKPCKKILWLKPNI*RSVQFL
Trigger: AAGGAATTGGACACTTCTCCAGATATTTGGCTTCAA...CCAAAGGATCTTTTTACAAGGCTTCCTGTGGTATTGACTCTGAGAATAACACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR TCA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCCATCCTTTAATTCCCTaGTTGTCTTCCTCAATGATT +
Preference number: 4 (lower is better)
Translates to: TFLSVIASLLEQRENGQLHPLIP*LSSSMI
Trigger: AATCATTGAGGAAGACAATCAGGGAATTAAAGGATG...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CCA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTATGCTTAAGTTTCTTTaGACTGTCCATTACACTGTA +
Preference number: 4 (lower is better)
Translates to: VWSSREDPIFNLTFLSVIMLKFL*TVHYTV
Trigger: TACAGTGTAATGGACAGTCCAAAGAAACTTAAGCAT...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS TCA 90 bp TGCCAGCGAGCACCCTGGCGTCCAAGAGCAGCGCGCGGGACCCGCTaGGCCCAGGGCCCGGGCCGAGCTCCGCCCCTTTCTCCAGGCTCC +
Preference number: 5 (lower is better)
Translates to: CQRAPWRPRAARGTR*AQGPGRAPPLSPGS
Trigger: GGAGCCTGGAGAAAGGGGCGGAGCTCGGCCCGGGCCCTGGGCTCAGCGGGTCCCGCGCGCTGCTCTTGGACGCCAGGGTGCTCGCTGGCA
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000514480.1
CDS GCA 90 bp AGTGAGCGTCCTTTCCTCTGGGGCCAACCAGCGTCTCCGCGCCGCTaGCGCCAACCTCGCGCCGAACTACGCCCTGAGATTTGGGCGGGT +
Preference number: 5 (lower is better)
Translates to: SERPFLWGQPASPRR*RQPRAELRPEIWAG
Trigger: ACCCGCCCAAATCTCAGGGCGTAGTTCGGCGCGAGGTTGGCGGCAGCGGCGCGGAGACGCTGGTTGGCCCCAGAGGAAAGGACGCTCACT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000514480.1
CDS CCA 90 bp AATGTGAGGGGAGGTGGAGGAGATGGCGGCGACGGCCCGGGAAGATaGCGCCAGCGGTCAAGAGCGAGGTCAGCGGGGCTGCGAGCACTA +
Preference number: 5 (lower is better)
Translates to: NVRGGGGDGGDGPGR*RQRSRARSAGLRAL
Trigger: TAGTGCTCGCAGCCCCGCTGACCTCGCTCTTGACCGCTGGCGCCATCTTCCCGGGCCGTCGCCGCCATCTCCTCCACCTCCCCTCACATT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000504218.5
CDS CCA 90 bp GCCCCGGGTCACGTGCTTAGGAGCCATATTGTCGCTAGTGGCCGCTaGGGCTGGGAGGGGTGTGCTAGAGAGGCGCAGCTTCTCTGGGCG +
Preference number: 5 (lower is better)
Translates to: APGHVLRSHIVASGR*GWEGCAREAQLLWA
Trigger: CGCCCAGAGAAGCTGCGCCTCTCTAGCACACCCCTCCCAGCCCCAGCGGCCACTAGCGACAATATGGCTCCTAAGCACGTGACCCGGGGC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000504218.5
CDS GCA 90 bp ACAGCAAGTAAACGGGAAAGGGAGGAAGCAAGAAGCACTTCGAGGTaGCAGCGAGCACCCTGGCGTCCAAGAGCAGCGCGCGGGACCCGC +
Preference number: 5 (lower is better)
Translates to: TASKREREEARSTSR*QRAPWRPRAARGTR
Trigger: GCGGGTCCCGCGCGCTGCTCTTGGACGCCAGGGTGCTCGCTGGCACCTCGAAGTGCTTCTTGCTTCCTCCCTTTCCCGTTTACTTGCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000514480.1
CDS CCA 90 bp GGTCACGTGCTTAGGAGCCATATTGTCGCTAGTGGCCGCTGGGGCTaGGAGGGGTGTGCTAGAGAGGCGCAGCTTCTCTGGGCGTGGTTT +
Preference number: 5 (lower is better)
Translates to: GHVLRSHIVASGRWG*EGCAREAQLLWAWF
Trigger: AAACCACGCCCAGAGAAGCTGCGCCTCTCTAGCACACCCCTCCCAGCCCCAGCGGCCACTAGCGACAATATGGCTCCTAAGCACGTGACC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000504218.5
CDS CCA 90 bp CCGCGCCGCTGCCGCCAACCTCGCGCCGAACTACGCCCTGAGATTTaGGCGGGTAGCGATTGGGGGAAAACAGGCAACCTAAGAGTTATT +
Preference number: 5 (lower is better)
Translates to: PRRCRQPRAELRPEI*AGSDWGKTGNLRVI
Trigger: AATAACTCTTAGGTTGCCTGTTTTCCCCCAATCGCTACCCGCCCAAATCTCAGGGCGTAGTTCGGCGCGAGGTTGGCGGCAGCGGCGCGG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000514480.1
CDS-3UTR CAA 90 bp CCACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCATGTAGTGAGCCGAGATaGCGCCACTGCATTCCAGCC +
Preference number: 5 (lower is better)
Translates to: PLHSSLGDGVMSRDCATACSEPR*RHCIPA
Trigger: GGCTGGAATGCAGTGGCGCAATCTCGGCTCACTACA...TGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000507557.5
ENST00000507885.5
CDS GCA 90 bp TTAGCAGCGAAGACTGCGACTAACGTCAACGACGGAGACTGCGTCTaGCTTCGCTTCCGCCTCGTAGCCCCGGGAACCGGAAATCCGTCT +
Preference number: 5 (lower is better)
Translates to: LAAKTATNVNDGDCV*LRFRLVAPGTGNPS
Trigger: AGACGGATTTCCGGTTCCCGGGGCTACGAGGCGGAAGCGAAGGCAGACGCAGTCTCCGTCGTTGACGTTAGTCGCAGTCTTCGCTGCTAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504218.5
CDS GCA 90 bp GTGACGTTAGCAGCGAAGACTGCGACTAACGTCAACGACGGAGACTaGGTCTGCCTTCGCTTCCGCCTCGTAGCCCCGGGAACCGGAAAT +
Preference number: 5 (lower is better)
Translates to: VTLAAKTATNVNDGD*VCLRFRLVAPGTGN
Trigger: ATTTCCGGTTCCCGGGGCTACGAGGCGGAAGCGAAGGCAGACGCAGTCTCCGTCGTTGACGTTAGTCGCAGTCTTCGCTGCTAACGTCAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504218.5
CDS-3UTR CAA 90 bp ACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACTTGTAGTGAGCCGAGATaGCGCCACTGCATTCCAGCC +
Preference number: 5 (lower is better)
Translates to: TAFQPGRRSDEPRLRHCTCSEPR*RHCIPA
Trigger: GGCTGGAATGCAGTGGCGCAATCTCGGCTCACTACA...AGTGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000507557.5
ENST00000507885.5
CDS-3UTR CAA 90 bp CCACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCACTGTTGCCTGTCCACTaGCCATTCCCTATGAAATGC +
Preference number: 5 (lower is better)
Translates to: PLHSSLGDGVMSRDCATALLPVH*PFPMKC
Trigger: GCATTTCATAGGGAATGGCAAGTGGACAGGCAACAG...TGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGTGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507885.5
CDS-3UTR CAA 90 bp CCACTGCATTCCAGCCTGGGCGACGGAGTGATGAGCCGAGATTGCGCCACTGCAAAGCATGAGAATCACTaGAACTTGGGAGGCAGAGGT +
Preference number: 5 (lower is better)
Translates to: PLHSSLGDGVMSRDCATAKHENH*NLGGRG
Trigger: ACCTCTGCCTCCCAAGTTCAAGTGATTCTCATGCTT...TGCAGTGGCGCAATCTCGGCTCATCACTCCGTCGCCCAGGCTGGAATGCAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000507885.5
CDS-3UTR CAA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGCTGGAGGGGGATGACTaGGGTTTTGCTTTACACAGG +
Preference number: 5 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMLEGDD*GFALHR
Trigger: CCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAG...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGTCCGTAGACTTTCCTTaGTATCCTCTAGCTCGCCGA +
Preference number: 5 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMSVDFP*YPLARR
Trigger: TCGGCGAGCTAGAGGATACAAAGGAAAGTCTACGGA...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTCCCTTAGGGTCAGGCTaGGCTGCCAGAGAAATTTCT +
Preference number: 5 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFAPLGSG*AAREIS
Trigger: AGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGG...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGCTTTTAACTTCGAATTaGGCAAGCAGCGAGAAGCAC +
Preference number: 5 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMLLTSN*ASSEKH
Trigger: GTGCTTCTCGCTGCTTGCCAAATTCGAAGTTAAAAG...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTAAAGGTCTTCCAGGTTaGGTGTATTCTAAGCAGCCA +
Preference number: 5 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFAKGLPG*VYSKQP
Trigger: TGGCTGCTTAGAATACACCAAACCTGGAAGACCTTT...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGAATACCCATTTCCTTTaGATGTTTTCATCTGTGGGG +
Preference number: 5 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMNTHFL*MFSSVG
Trigger: CCCCACAGATGAAAACATCAAAAGGAAATGGGTATT...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AGTGGAACCCTTAGGGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGTCTATTTGCTGTTTCTaGGCTGATCAGACATTCATC +
Preference number: 5 (lower is better)
Translates to: SGTLRVRLGCQRNFWRGMSICCF*ADQTFI
Trigger: GATGAATGTCTGATCAGCCAAGAAACAGCAAATAGA...CATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGGTTCCACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACTGGGGTTTCACCATCTaGGCCAGGCTGGTTTTGAAC +
Preference number: 5 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNWGFTI*ARLVLN
Trigger: GTTCAAAACCAGCCTGGCCAAGATGGTGAAACCCCA...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTATGCAACGGCGTGATCTaGGCTCACTGCAATCTCCGC +
Preference number: 5 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLCNGVI*AHCNLR
Trigger: GCGGAGATTGCAGTGAGCCAAGATCACGCCGTTGCA...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp ACTGTGTTTAGGCATTTGTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCATGCAACGGCGTGATCTaGGCTCACTGCAATCTCCGC +
Preference number: 5 (lower is better)
Translates to: TVFRHLFGAAGRTLFLISCNGVI*AHCNLR
Trigger: GCGGAGATTGCAGTGAGCCAAGATCACGCCGTTGCA...TGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACACAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACCCCTTAGGGTCAGGCTaGGCTGCCAGAGAAATTTCT +
Preference number: 5 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNPLGSG*AAREIS
Trigger: AGAAATTTCTCTGGCAGCCAAGCCTGACCCTAAGGG...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp GAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAGATTCTGCCCTGTTTATGCTaGGCAGTAGCATCAGACAGA +
Preference number: 5 (lower is better)
Translates to: ECASALFMLGSSIRQIQILPCLC*AVASDR
Trigger: TCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAG...AATCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS-3UTR CAA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTCCGTAGACTTTCCTTaGTATCCTCTAGCTCGCCGA +
Preference number: 5 (lower is better)
Translates to: SGNRGLRYILCLGICLEQSVDFP*YPLARR
Trigger: TCGGCGAGCTAGAGGATACAAAGGAAAGTCTACGGA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp GGTCAGGCTTGGCTGCCAGAGAAATTTCTGGAGGGGGATGACTTGGGTTTTGCTCTTCTAAGTAGAGTGTaGCTTTGGCAAATGGTTTTT +
Preference number: 5 (lower is better)
Translates to: GQAWLPEKFLEGDDLGFALLSRV*LWQMVF
Trigger: AAAAACCATTTGCCAAAGCAACACTCTACTTAGAAG...AGCAAAACCCAAGTCATCCCCCTCCAGAAATTTCTCTGGCAGCCAAGCCTGACC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACGTGACTGTGGCAATTTaGATAGTGGCAGACTGGGAT +
Preference number: 5 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNVTVAI*IVADWD
Trigger: ATCCCAGTCTGCCACTATCAAAATTGCCACAGTCAC...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTATGTTTAGGCATTTGTTaGGAGCAGCAGGGAGGACCC +
Preference number: 5 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLCLGIC*EQQGGP
Trigger: GGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACA...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp TTTTACTCTTGGAAAGGTCTTCCAGGTTTGGTGTATTCTAAGCAGCCAGTAGAGCTGGAGGGGGATGACTaGGGTTTTGCTTTACACAGG +
Preference number: 5 (lower is better)
Translates to: FYSWKGLPGLVYSKQPVELEGDD*GFALHR
Trigger: CCTGTGTAAAGCAAAACCCAAGTCATCCCCCTCCAG...CTCTACTGGCTGCTTAGAATACACCAAACCTGGAAGACCTTTCCAAGAGTAAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTACGCTTCGTACCTGACTaGGTGCTGAGGTTGAACTGT +
Preference number: 5 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLRFVPD*VLRLNC
Trigger: ACAGTTCAACCTCAGCACCAAGTCAGGTACGAAGCG...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp CAAGATGAGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCTGTTGCCTGTCCACTaGCCATTCCCTATGAAATGC +
Preference number: 5 (lower is better)
Translates to: QDEFTFYPSASKCPNWSFLLPVH*PFPMKC
Trigger: GCATTTCATAGGGAATGGCAAGTGGACAGGCAACAG...GAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACTCATCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS GCA 90 bp CCTGTTAGTGGTTCTACTCCTGACTTCTGCCCCAGTGTTAAGGACTaGCAACTTGGAACATCAGTTCAACCTTCTTACGTTAACTTCCAT +
Preference number: 5 (lower is better)
Translates to: PVSGSTPDFCPSVKD*QLGTSVQPSYVNFH
Trigger: ATGGAAGTTAACGTAAGAAGGTTGAACTGATGTTCCAAGTTGGCAGTCCTTAACACTGGGGCAGAAGTCAGGAGTAGAACCACTAACAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504384.5
CDS-3UTR CAA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTAGGGATGACTTGGGTTTaGCTTTACACAGGCCAGTTC +
Preference number: 5 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLGMTWV*LYTGQF
Trigger: GAACTGGCCTGTGTAAAGCAAAACCCAAGTCATCCC...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp CCAAATGGAGTGACTGAAGTCTGGCCTTTAAGACATTGTGAATGTTCAGCAACACTGTTGCCTGTCCACTaGCCATTCCCTATGAAATGC +
Preference number: 5 (lower is better)
Translates to: PNGVTEVWPLRHCECSATLLPVH*PFPMKC
Trigger: GCATTTCATAGGGAATGGCAAGTGGACAGGCAACAG...TGTTGCTGAACATTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS-3UTR CAA 90 bp CATCCTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCGGATATTTGAATGTTTaGCCTGTGTATGTGGTAAGG +
Preference number: 5 (lower is better)
Translates to: HPECASALFMLGSSIRQIGYLNV*PVYVVR
Trigger: CCTTACCACATACACAGGCAAAACATTCAAATATCC...GATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAGGATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS-3UTR CAA 90 bp CTGAGTGTGCATCTGCCCTGTTTATGCTTGGCAGTAGCATCAGACAGATCCAGAGAGACCTGTGGATATTaGAATGTTTTGCCTGTGTAT +
Preference number: 5 (lower is better)
Translates to: LSVHLPCLCLAVASDRSRETCGY*NVLPVY
Trigger: ATACACAGGCAAAACATTCAAATATCCACAGGTCTC...TCTGGATCTGTCTGATGCTACTGCCAAGCATAAACAGGGCAGATGCACACTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS-3UTR CAA 90 bp TCAGTGACATCTTGGCATGTGAACTTGTCCCAACCAATTGTCAACCAAGACGGATCTTGGCATGTGAACTaGTCCCAACCAATTGTCAAC +
Preference number: 5 (lower is better)
Translates to: SVTSWHVNLSQPIVNQDGSWHVN*SQPIVN
Trigger: GTTGACAATTGGTTGGGACAAGTTCACATGCCAAGA...TCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCACATGCCAAGATGTCACTGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS GCA 90 bp TCTTACAAGTACTTTAGTCCTGTTAGTGGTTCTACTCCTGACTTCTaGCCCAGTGTTAAGGACTGCCAACTTGGAACATCAGTTCAACCT +
Preference number: 5 (lower is better)
Translates to: SYKYFSPVSGSTPDF*PSVKDCQLGTSVQP
Trigger: AGGTTGAACTGATGTTCCAAGTTGGCAGTCCTTAACACTGGGGCAGAAGTCAGGAGTAGAACCACTAACAGGACTAAAGTACTTGTAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504384.5
CDS-3UTR CAA 90 bp AGTTCACATTTTATCCTTCAGCCTCTAAATGCCCCAACTGGAGCTTCCAAATGGCTTTTAACTTCGAATTaGGCAAGCAGCGAGAAGCAC +
Preference number: 5 (lower is better)
Translates to: SSHFILQPLNAPTGASKWLLTSN*ASSEKH
Trigger: GTGCTTCTCGCTGCTTGCCAAATTCGAAGTTAAAAG...CCATTTGGAAGCTCCAGTTGGGGCATTTAGAGGCTGAAGGATAAAATGTGAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000507556.5
CDS-3UTR CAA 90 bp ATGTGTTATTCTCAGAGTCAATACCACAGGAAGCCTTGTAAAAAGATCCTTTGGTGTTTAGGCATTTGTTaGGAGCAGCAGGGAGGACCC +
Preference number: 5 (lower is better)
Translates to: MCYSQSQYHRKPCKKILWCLGIC*EQQGGP
Trigger: GGGTCCTCCCTGCTGCTCCAAACAAATGCCTAAACA...CCAAAGGATCTTTTTACAAGGCTTCCTGTGGTATTGACTCTGAGAATAACACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AGAAAAATTCCACGTATCAAGCGCTTCGTACCTGACTTGGTGCTGAGGTTGAACAATACCCATTTCCTTTaGATGTTTTCATCTGTGGGG +
Preference number: 5 (lower is better)
Translates to: RKIPRIKRFVPDLVLRLNNTHFL*MFSSVG
Trigger: CCCCACAGATGAAAACATCAAAAGGAAATGGGTATT...GTTCAACCTCAGCACCAAGTCAGGTACGAAGCGCTTGATACGTGGAATTTTTCT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp TCAGTGACATCTTGGCATGTGAACTTGTCCCAACCAATTGTCAACCAAGACGGAAATACCCATTTCCTTTaGATGTTTTCATCTGTGGGG +
Preference number: 5 (lower is better)
Translates to: SVTSWHVNLSQPIVNQDGNTHFL*MFSSVG
Trigger: CCCCACAGATGAAAACATCAAAAGGAAATGGGTATT...TCCGTCTTGGTTGACAATTGGTTGGGACAAGTTCACATGCCAAGATGTCACTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR CAA 90 bp GCAGCCAGTAGAGTGCTAGAATTTAGACATACTGTGTTTGGATCTACCCTCTTAAAAGGTCTTCCAGGTTaGGTGTATTCTAAGCAGCCA +
Preference number: 5 (lower is better)
Translates to: AASRVLEFRHTVFGSTLLKGLPG*VYSKQP
Trigger: TGGCTGCTTAGAATACACCAAACCTGGAAGACCTTT...TAAGAGGGTAGATCCAAACACAGTATGTCTAAATTCTAGCACTCTACTGGCTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp ATGTGTTATTCTCAGAGTCAATACCACAGGAAGCCTTGTAAAAAGATCCTTTGGGGGATGACTTGGGTTTaGCTTTACACAGGCCAGTTC +
Preference number: 5 (lower is better)
Translates to: MCYSQSQYHRKPCKKILWGMTWV*LYTGQF
Trigger: GAACTGGCCTGTGTAAAGCAAAACCCAAGTCATCCC...CCAAAGGATCTTTTTACAAGGCTTCCTGTGGTATTGACTCTGAGAATAACACAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp ACATTTCTATCAGTAATTGCTTCCCTATTAGAACAAAGAGAAAATGGGCAGCTCCGCTTCGTACCTGACTaGGTGCTGAGGTTGAACTGT +
Preference number: 5 (lower is better)
Translates to: TFLSVIASLLEQRENGQLRFVPD*VLRLNC
Trigger: ACAGTTCAACCTCAGCACCAAGTCAGGTACGAAGCG...GAGCTGCCCATTTTCTCTTTGTTCTAATAGGGAAGCAATTACTGATAGAAATGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp CCAAATGGAGTGACTGAAGTCTGGCCTTTAAGACATTGTGAATGTTCAGCAACAACCAGCTGTGAAACCTaGGGCAAATTACCTAGCTTT +
Preference number: 5 (lower is better)
Translates to: PNGVTEVWPLRHCECSATTSCET*GKLPSF
Trigger: AAAGCTAGGTAATTTGCCCAAGGTTTCACAGCTGGT...TGTTGCTGAACATTCACAATGTCTTAAAGGCCAGACTTCAGTCACTCCATTTGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000504190.5
ENST00000507556.5
CDS CCA 90 bp TTAATGTCTTCCTCCTCCACCAGTCTTGTTAGTTCCATGAGGTCATaGTGGAGTGTGTCTATTTTTCCTTACTTTTTGTCCTCACGGTTT +
Preference number: 5 (lower is better)
Translates to: LMSSSSTSLVSSMRS*WSVSIFPYFLSSRF
Trigger: AAACCGTGAGGACAAAAAGTAAGGAAAAATAGACACACTCCACCATGACCTCATGGAACTAACAAGACTGGTGGAGGAGGAAGACATTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000504218.5
ENST00000514480.1
CDS-3UTR CAA 90 bp TTTTACTCTTGGAAAGGTCTTCCAGGTTTGGTGTATTCTAAGCAGCCAGTAGAGGACTTGGTGCTGAGGTaGAACTGTTGTATTAATGTG +
Preference number: 5 (lower is better)
Translates to: FYSWKGLPGLVYSKQPVEDLVLR*NCCINV
Trigger: CACATTAATACAACAGTTCAACCTCAGCACCAAGTC...CTCTACTGGCTGCTTAGAATACACCAAACCTGGAAGACCTTTCCAAGAGTAAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AACCAATTGTCAACCAAGACGGAATTATTCATTGGTTTGTCTGTTCAGTGTCTGTGGTTCAGTGACATCTaGGCATGTGAACTTGTCCCA +
Preference number: 5 (lower is better)
Translates to: NQLSTKTELFIGLSVQCLWFSDI*ACELVP
Trigger: TGGGACAAGTTCACATGCCAAGATGTCACTGAACCA...CAGACACTGAACAGACAAACCAATGAATAATTCCGTCTTGGTTGACAATTGGTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR CAA 90 bp TCTGGGAACAGAGGACTGAGATACATACTGTGTTTAGGCATTTGTTTGGAGCAGTTAGACATACTGTGTTaGGATCTACCCTCTTACTTA +
Preference number: 5 (lower is better)
Translates to: SGNRGLRYILCLGICLEQLDILC*DLPSYL
Trigger: TAAGTAAGAGGGTAGATCCAAACACAGTATGTCTAA...CTGCTCCAAACAAATGCCTAAACACAGTATGTATCTCAGTCCTCTGTTCCCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp AACCAATTGTCAACCAAGACGGAATTATTCATTGGTTTGTCTGTTCAGTGTCTGAGTGACTGTAGGATCTaGTGGTTCAGTGACATCTTG +
Preference number: 5 (lower is better)
Translates to: NQLSTKTELFIGLSVQCLSDCRI*WFSDIL
Trigger: CAAGATGTCACTGAACCACAAGATCCTACAGTCACT...CAGACACTGAACAGACAAACCAATGAATAATTCCGTCTTGGTTGACAATTGGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS TCA 90 bp ACATTCCGTAGACTTTCCTTTGTATCCTCTAGCTCGCCGATCACATaGTCTAATTTATGCTTAAGTTTCTTTGGACTGTCCATTACACTG +
Preference number: 5 (lower is better)
Translates to: TFRRLSFVSSSSPIT*SNLCLSFFGLSITL
Trigger: CAGTGTAATGGACAGTCCAAAGAAACTTAAGCATAAATTAGATCATGTGATCGGCGAGCTAGAGGATACAAAGGAAAGTCTACGGAATGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000311638.7
ENST00000380837.7
ENST00000514480.1
CDS-3UTR CAA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTGACTTGGTGCTGAGGTaGAACTGTTGTATTAATGTG +
Preference number: 5 (lower is better)
Translates to: VWSSREDPIFNLTFLSVIDLVLR*NCCINV
Trigger: CACATTAATACAACAGTTCAACCTCAGCACCAAGTC...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp ATTCATTGGTTTGTCTGTTCAGTGTCTGTATCTAAGTCACCTGTAGTTCCAGCTAGACGGAATTATTCATaGGTTTGTCTGTTCAGTGTC +
Preference number: 5 (lower is better)
Translates to: IHWFVCSVSVSKSPVVPARRNYS*VCLFSV
Trigger: GACACTGAACAGACAAACCAATGAATAATTCCGTCT...AGCTGGAACTACAGGTGACTTAGATACAGACACTGAACAGACAAACCAATGAAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR CAA 90 bp ACTTGTCCCAACCAATTGTCAACCAAGACGGAATTATTCATTGGTTTGTCTGTTACTTGTCCCAACCAATaGTCAACCAAGACGGAATTA +
Preference number: 5 (lower is better)
Translates to: TCPNQLSTKTELFIGLSVTCPNQ*STKTEL
Trigger: TAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGT...AACAGACAAACCAATGAATAATTCCGTCTTGGTTGACAATTGGTTGGGACAAGT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000502620.1
CDS-3UTR CAA 90 bp GTTTGGAGCAGCAGGGAGGACCCTATTTTTAATCTCACATTTCTATCAGTAATTTCTATTTGCTGTTTCTaGGCTGATCAGACATTCATC +
Preference number: 5 (lower is better)
Translates to: VWSSREDPIFNLTFLSVISICCF*ADQTFI
Trigger: GATGAATGTCTGATCAGCCAAGAAACAGCAAATAGA...AATTACTGATAGAAATGTGAGATTAAAAATAGGGTCCTCCCTGCTGCTCCAAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp ATGTGTTATTCTCAGAGTCAATACCACAGGAAGCCTTGTAAAAAGATCCTTTGGAGTAAAGGTACTCCTTaGAAGCCAAATATCTGGAGA +
Preference number: 5 (lower is better)
Translates to: MCYSQSQYHRKPCKKILWSKGTP*KPNIWR
Trigger: TCTCCAGATATTTGGCTTCAAAGGAGTACCTTTACT...CCAAAGGATCTTTTTACAAGGCTTCCTGTGGTATTGACTCTGAGAATAACACAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS-3UTR CAA 90 bp GAGGGAAGAATTATTTCCTTGGTAGAAATATCCTTGCAAAAGCCTTCTTCAGTGTTGGTAGAAATATCCTaGCAAAAGCCTTCTTCAGTG +
Preference number: 5 (lower is better)
Translates to: EGRIISLVEISLQKPSSVLVEIS*QKPSSV
Trigger: CACTGAAGAAGGCTTTTGCAAGGATATTTCTACCAA...CACTGAAGAAGGCTTTTGCAAGGATATTTCTACCAAGGAAATAATTCTTCCCTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000508105.5
CDS-3UTR CAA 90 bp ATGTGTTATTCTCAGAGTCAATACCACAGGAAGCCTTGTAAAAAGATCCTTTGGTTAGACATACTGTGTTaGGATCTACCCTCTTACTTA +
Preference number: 5 (lower is better)
Translates to: MCYSQSQYHRKPCKKILWLDILC*DLPSYL
Trigger: TAAGTAAGAGGGTAGATCCAAACACAGTATGTCTAA...CCAAAGGATCTTTTTACAAGGCTTCCTGTGGTATTGACTCTGAGAATAACACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000311638.7
ENST00000380837.7
CDS CCA 90 bp AGAATCAAAGATAGAAGGTATGACTCCAGGTTTCAGTTTAATATTTaGAGCACTTCTGTCAAAATCTGTCTTCTTAAAGTGCCTCGAACA +
Preference number: 5 (lower is better)
Translates to: RIKDRRYDSRFQFNI*STSVKICLLKVPRT
Trigger: TGTTCGAGGCACTTTAAGAAGACAGATTTTGACAGAAGTGCTCCAAATATTAAACTGAAACCTGGAGTCATACCTTCTATCTTTGATTCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENST00000311638.7
ENST00000380837.7
ENST00000502620.1
ENST00000503831.1
ENST00000504190.5
ENST00000504384.5
ENST00000507556.5
ENST00000507557.5
ENST00000507885.5
ENST00000508105.5
ENST00000514480.1
CDS CCA 90 bp AGAATTAACATGAGCTCAGCAAGTAATTTACTTACAAAAATGAACTaGGATTGGAATTCTTCAATACATGAGGAAGCACCAACAAGATGG +
Preference number: 5 (lower is better)
Translates to: RINMSSASNLLTKMN*DWNSSIHEEAPTRW
Trigger: CCATCTTGTTGGTGCTTCCTCATGTATTGAAGAATTCCAATCCCAGTTCATTTTTGTAAGTAAATTACTTGCTGAGCTCATGTTAATTCT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000503831.1
ENST00000508105.5
CDS CCA 72 bp GGAGGTGGAGGAGATGGCGGCGACGGCCCGGGAAGATaGCGCCAGCGGTCAAGAGCGAGGTCAGCGGGGCTG +
Preference number: 6 (lower is better)
Translates to: GGGGDGGDGPGR*RQRSRARSAGL
Trigger: CAGCCCCGCTGACCTCGCTCTTGACCGCTGGCGCCATCTTCCCGGGCCGTCGCCGCCATCTCCTCCACCTCC
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504218.5
CDS GCA 72 bp CCTTTCCTCTGGGGCCAACCAGCGTCTCCGCGCCGCTaGCGCCAACCTCGCGCCGAACTACGCCCTGAGATT +
Preference number: 6 (lower is better)
Translates to: PFLWGQPASPRR*RQPRAELRPEI
Trigger: AATCTCAGGGCGTAGTTCGGCGCGAGGTTGGCGGCAGCGGCGCGGAGACGCTGGTTGGCCCCAGAGGAAAGG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000514480.1
CDS GCA 72 bp CCCCGGGAACCGGAAATCCGTCTGCCCCGGGTCACGTaGTTAGGAGCCATATTGTCGCTAGTGGCCGCTGGG +
Preference number: 6 (lower is better)
Translates to: PREPEIRLPRVT*LGAILSLVAAG
Trigger: CCCAGCGGCCACTAGCGACAATATGGCTCCTAAGCACGTGACCCGGGGCAGACGGATTTCCGGTTCCCGGGG
65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000504218.5
CDS GCA 72 bp GCAGCGAAGACTGCGACTAACGTCAACGACGGAGACTaGGTCTGCCTTCGCTTCCGCCTCGTAGCCCCGGGA +
Preference number: 6 (lower is better)
Translates to: AAKTATNVNDGD*VCLRFRLVAPG
Trigger: TCCCGGGGCTACGAGGCGGAAGCGAAGGCAGACGCAGTCTCCGTCGTTGACGTTAGTCGCAGTCTTCGCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENST00000504218.5
ENST00000504384.5
ENST00000507557.5
CDS GCA 72 bp AAGACTGCGACTAACGTCAACGACGGAGACTGCGTCTaGCTTCGCTTCCGCCTCGTAGCCCCGGGAACCGGA +
Preference number: 6 (lower is better)
Translates to: KTATNVNDGDCV*LRFRLVAPGTG
Trigger: TCCGGTTCCCGGGGCTACGAGGCGGAAGCGAAGGCAGACGCAGTCTCCGTCGTTGACGTTAGTCGCAGTCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENST00000504218.5
ENST00000504384.5
CDS GCA 72 bp AAACGGGAAAGGGAGGAAGCAAGAAGCACTTCGAGGTaGCAGCGAGCACCCTGGCGTCCAAGAGCAGCGCGC +
Preference number: 6 (lower is better)
Translates to: KREREEARSTSR*QRAPWRPRAAR
Trigger: GCGCGCTGCTCTTGGACGCCAGGGTGCTCGCTGGCACCTCGAAGTGCTTCTTGCTTCCTCCCTTTCCCGTTT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000514480.1
CDS CCA 72 bp CTTAGGAGCCATATTGTCGCTAGTGGCCGCTGGGGCTaGGAGGGGTGTGCTAGAGAGGCGCAGCTTCTCTGG +
Preference number: 6 (lower is better)
Translates to: LRSHIVASGRWG*EGCAREAQLLW
Trigger: CCAGAGAAGCTGCGCCTCTCTAGCACACCCCTCCCAGCCCCAGCGGCCACTAGCGACAATATGGCTCCTAAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000504218.5
CDS CCA 72 bp CACGTGCTTAGGAGCCATATTGTCGCTAGTGGCCGCTaGGGCTGGGAGGGGTGTGCTAGAGAGGCGCAGCTT +
Preference number: 6 (lower is better)
Translates to: HVLRSHIVASGR*GWEGCAREAQL
Trigger: AAGCTGCGCCTCTCTAGCACACCCCTCCCAGCCCCAGCGGCCACTAGCGACAATATGGCTCCTAAGCACGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504218.5
CDS CAA 90 bp CATCTGTGGGGAATACGTGAAATGTCAGTCCTTTTAACTTCGAATTaGGCAAGCAGCGAGAAGCACATCCAATGGCGGAGCAGCATTTCA +
Preference number: 6 (lower is better)
Translates to: HLWGIREMSVLLTSN*ASSEKHIQWRSSIS
Trigger: TGAAATGCTGCTCCGCCATTGGATGTGCTTCTCGCTGCTTGCCAAATTCGAAGTTAAAAGGACTGACATTTCACGTATTCCCCACAGATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 8 transcripts:
ENST00000311638.7
ENST00000380837.7
ENST00000503831.1
ENST00000504218.5
ENST00000504384.5
ENST00000506261.5
ENST00000507556.5
ENST00000514480.1
CDS GCA 72 bp GGTTCTACTCCTGACTTCTGCCCCAGTGTTAAGGACTaGCAACTTGGAACATCAGTTCAACCTTCTTACGTT +
Preference number: 6 (lower is better)
Translates to: GSTPDFCPSVKD*QLGTSVQPSYV
Trigger: AACGTAAGAAGGTTGAACTGATGTTCCAAGTTGGCAGTCCTTAACACTGGGGCAGAAGTCAGGAGTAGAACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504384.5
CDS CAA 72 bp GGAATACGTGAAATGTCAGTCCTTTTAACTTCGAATTaGGCAAGCAGCGAGAAGCACATCCAATGGCGGAGC +
Preference number: 6 (lower is better)
Translates to: GIREMSVLLTSN*ASSEKHIQWRS
Trigger: GCTCCGCCATTGGATGTGCTTCTCGCTGCTTGCCAAATTCGAAGTTAAAAGGACTGACATTTCACGTATTCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENST00000311638.7
ENST00000380837.7
ENST00000503831.1
ENST00000504218.5
ENST00000504384.5
ENST00000506261.5
ENST00000507556.5
ENST00000514480.1
CDS CAA 72 bp CTCCTGACTTCTGCCCCAGTGTTAAGGACTGCCAACTaGGAACATCAGTTCAACCTTCTTACGTTAACTTCC +
Preference number: 6 (lower is better)
Translates to: LLTSAPVLRTAN*EHQFNLLTLTS
Trigger: GGAAGTTAACGTAAGAAGGTTGAACTGATGTTCCAAGTTGGCAGTCCTTAACACTGGGGCAGAAGTCAGGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504384.5
CDS GCA 72 bp TACTTTAGTCCTGTTAGTGGTTCTACTCCTGACTTCTaGCCCAGTGTTAAGGACTGCCAACTTGGAACATCA +
Preference number: 6 (lower is better)
Translates to: YFSPVSGSTPDF*PSVKDCQLGTS
Trigger: TGATGTTCCAAGTTGGCAGTCCTTAACACTGGGGCAGAAGTCAGGAGTAGAACCACTAACAGGACTAAAGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000504384.5
CDS CCA 72 bp TCCTCCTCCACCAGTCTTGTTAGTTCCATGAGGTCATaGTGGAGTGTGTCTATTTTTCCTTACTTTTTGTCC +
Preference number: 6 (lower is better)
Translates to: SSSTSLVSSMRS*WSVSIFPYFLS
Trigger: GGACAAAAAGTAAGGAAAAATAGACACACTCCACCATGACCTCATGGAACTAACAAGACTGGTGGAGGAGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENST00000504218.5
ENST00000514480.1
CDS CAA 90 bp GTGGTTCTACTCCTGACTTCTGCCCCAGTGTTAAGGACTGCCAACTaGGAACATCAGTTCAACCTTCTTACGTTAACTTCCATTTTTAGA +
Preference number: 6 (lower is better)
Translates to: VVLLLTSAPVLRTAN*EHQFNLLTLTSIFR
Trigger: TCTAAAAATGGAAGTTAACGTAAGAAGGTTGAACTGATGTTCCAAGTTGGCAGTCCTTAACACTGGGGCAGAAGTCAGGAGTAGAACCAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000504384.5
CDS CAA 72 bp GTTTTTCTCGGTCTAAAACATTCCGTAGACTTTCCTTaGTATCCTCTAGCTCGCCGATCACATGATCTAATT +
Preference number: 6 (lower is better)
Translates to: VFLGLKHSVDFP*YPLARRSHDLI
Trigger: AATTAGATCATGTGATCGGCGAGCTAGAGGATACAAAGGAAAGTCTACGGAATGTTTTAGACCGAGAAAAAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000311638.7
ENST00000380837.7
ENST00000514480.1
CDS TCA 72 bp TCCTGTTCTTGTTTCCTTTTCCTGTGTTTCTGTAGGTaGTATGGAGAATCAAAGATAGAAGGTATGACTCCA +
Preference number: 6 (lower is better)
Translates to: SCSCFLFLCFCR*YGESKIEGMTP
Trigger: TGGAGTCATACCTTCTATCTTTGATTCTCCATATCACCTACAGAAACACAGGAAAAGGAAACAAGAACAGGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000504190.5
CDS CCA 72 bp GATAGAAGGTATGACTCCAGGTTTCAGTTTAATATTTaGAGCACTTCTGTCAAAATCTGTCTTCTTAAAGTG +
Preference number: 6 (lower is better)
Translates to: DRRYDSRFQFNI*STSVKICLLKV
Trigger: CACTTTAAGAAGACAGATTTTGACAGAAGTGCTCCAAATATTAAACTGAAACCTGGAGTCATACCTTCTATC
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENST00000311638.7
ENST00000380837.7
ENST00000502620.1
ENST00000503831.1
ENST00000504190.5
ENST00000504384.5
ENST00000507556.5
ENST00000507557.5
ENST00000507885.5
ENST00000508105.5
ENST00000514480.1
CDS CCA 72 bp TCAGCAAGTAATTTACTTACAAAAATGAACTGGGATTaGAATTCTTCAATACATGAGGAAGCACCAACAAGA +
Preference number: 6 (lower is better)
Translates to: SASNLLTKMNWD*NSSIHEEAPTR
Trigger: TCTTGTTGGTGCTTCCTCATGTATTGAAGAATTCCAATCCCAGTTCATTTTTGTAAGTAAATTACTTGCTGA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENST00000503831.1
ENST00000508105.5