RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for TFAP2B (Homo sapiens)

Ensembl gene IDs: ENSG00000008196

Ensembl transcript IDs: ENST00000344788.7, ENST00000393655.4, ENST00000489228.1

Found 306 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCGAGAGCGGGAAGGGCCCGCGCAGTCGGCAGCCCCTCCAGCGGCTaGTTCTATGTCCTCAACACGACTGGGCGCCTGTGGCCCACACGC +
Preference number: 1 (lower is better)
Translates to: PRAGRARAVGSPSSG*FYVLNTTGRLWPTR
Trigger: GCGTGTGGGCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGCCGACTGCGCGGGCCCTTCCCGCTCTCGG
70% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 90 bp CAGAACCTGCTCTGCCGGCCGGCACCAAAAATTGCAGCCTCCGCCTaGTCTCCACAGGCCTCCCGCCCCGCCCTCGCCCTCCCTAATTAT +
Preference number: 1 (lower is better)
Translates to: QNLLCRPAPKIAASA*SPQASRPALALPNY
Trigger: ATAATTAGGGAGGGCGAGGGCGGGGCGGGAGGCCTGTGGAGACCAGGCGGAGGCTGCAATTTTTGGTGCCGGCCGGCAGAGCAGGTTCTG
66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp GGCGCGTCCATCGCGTCTCTCGCACGTCACACGCGTGGGGCGCGTTaGCCTGCAAGGAAAGGAGACGATCGTTTTCAGTGTGGTCTCTCC +
Preference number: 1 (lower is better)
Translates to: GASIASLARHTRGAR*PARKGDDRFQCGLS
Trigger: GGAGAGACCACACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGACGTGCGAGAGACGCGATGGACGCGCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp TCCTCAACACGACTGGGCGCCTGTGGCCCACACGCTCTCAGGACCTaGACAGTAAGAGCAAGGCGCGTCCATCGCGTCTCTCGCACGTCA +
Preference number: 1 (lower is better)
Translates to: SSTRLGACGPHALRT*TVRARRVHRVSRTS
Trigger: TGACGTGCGAGAGACGCGATGGACGCGCCTTGCTCTTACTGTGCAGGTCCTGAGAGCGTGTGGGCCACAGGCGCCCAGTCGTGTTGAGGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 90 bp GTAAGAGCAAGGCGCGTCCATCGCGTCTCTCGCACGTCACACGCGTaGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTG +
Preference number: 1 (lower is better)
Translates to: VRARRVHRVSRTSHA*GALPCKERRRSFSV
Trigger: CACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGACGTGCGAGAGACGCGATGGACGCGCCTTGCTCTTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp ATCAACTTATTGGTCCGGATTTTCCTCAGCCGCCAGAACCTGCTCTaGCGGCCGGCACCAAAAATTGCAGCCTCCGCCTGGTCTCCACAG +
Preference number: 1 (lower is better)
Translates to: INLLVRIFLSRQNLL*RPAPKIAASAWSPQ
Trigger: CTGTGGAGACCAGGCGGAGGCTGCAATTTTTGGTGCCGGCCGGCAGAGCAGGTTCTGGCGGCTGAGGAAAATCCGGACCAATAAGTTGAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 90 bp AATGCGATCGGCCGAGCTCTCGGACGAAGGCGCAGGCCTCTGAGCTaGGAAAAGAGAGTGACTACACTCTCCGTAACGTCTAGCTCTTGG +
Preference number: 1 (lower is better)
Translates to: NAIGRALGRRRRPLS*EKRVTTLSVTSSSW
Trigger: CCAAGAGCTAGACGTTACGGAGAGTGTAGTCACTCTCTTTTCCCAGCTCAGAGGCCTGCGCCTTCGTCCGAGAGCTCGGCCGATCGCATT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp TTTGAATCAACTTATTGGTCCGGATTTTCCTCAGCCGCCAGAACCTaGTCTGCCGGCCGGCACCAAAAATTGCAGCCTCCGCCTGGTCTC +
Preference number: 1 (lower is better)
Translates to: FESTYWSGFSSAART*SAGRHQKLQPPPGL
Trigger: GAGACCAGGCGGAGGCTGCAATTTTTGGTGCCGGCCGGCAGAGCAGGTTCTGGCGGCTGAGGAAAATCCGGACCAATAAGTTGATTCAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp ACGGAATCCTCACCCAAACAGGACATTTCTTGCTCCCCAGAGACCTaGAATACGTGCAGGAGGCGGCAGGGTTTGGCAGAGAATGGTCTG +
Preference number: 1 (lower is better)
Translates to: TESSPKQDISCSPET*NTCRRRQGLAENGL
Trigger: CAGACCATTCTCTGCCAAACCCTGCCGCCTCCTGCACGTATTGCAGGTCTCTGGGGAGCAAGAAATGTCCTGTTTGGGTGAGGATTCCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp TCACCCAAACAGGACATTTCTTGCTCCCCAGAGACCTGCAATACGTaGAGGAGGCGGCAGGGTTTGGCAGAGAATGGTCTGGAGATCTTT +
Preference number: 1 (lower is better)
Translates to: SPKQDISCSPETCNT*RRRQGLAENGLEIF
Trigger: AAAGATCTCCAGACCATTCTCTGCCAAACCCTGCCGCCTCCTGCACGTATTGCAGGTCTCTGGGGAGCAAGAAATGTCCTGTTTGGGTGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 90 bp TGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTGTGGTCTCTCCTaGCCTTGTGCAATCAGAACACATCTAATGCGATCGGCCGAGCTC +
Preference number: 1 (lower is better)
Translates to: CPARKGDDRFQCGLS*PCAIRTHLMRSAEL
Trigger: GAGCTCGGCCGATCGCATTAGATGTGTTCTGATTGCACAAGGCCAGGAGAGACCACACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 90 bp TGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTGTaGTCTCTCCTGGCCTTGTGCAATCAGAACACATCTAATGCGATC +
Preference number: 1 (lower is better)
Translates to: WGALPCKERRRSFSV*SLLALCNQNTSNAI
Trigger: GATCGCATTAGATGTGTTCTGATTGCACAAGGCCAGGAGAGACCACACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 90 bp GCTCTTGGCCATTGCATTCCTCTCAACAGTTCTAGGGCTGGGCCATaGAGATCAGAAGTGCTAAACGAAGCTAGGGGTTGGAGATGGGCT +
Preference number: 1 (lower is better)
Translates to: ALGHCIPLNSSRAGP*RSEVLNEARGWRWA
Trigger: AGCCCATCTCCAACCCCTAGCTTCGTTTAGCACTTCTGATCTTCATGGCCCAGCCCTAGAACTGTTGAGAGGAATGCAATGGCCAAGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 90 bp TCTCGCTGGAGCAAGGAGGAACACACAAATGAGGGCGTCTGGCAATaGAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCT +
Preference number: 1 (lower is better)
Translates to: SRWSKEEHTNEGVWQ*RYPALPSKTIPIPS
Trigger: AGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTCATTGCCAGACGCCCTCATTTGTGTGTTCCTCCTTGCTCCAGCGAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp AAGGAAAGGAGACGATCGTTTTCAGTGTGGTCTCTCCTGGCCTTGTaGAATCAGAACACATCTAATGCGATCGGCCGAGCTCTCGGACGA +
Preference number: 1 (lower is better)
Translates to: KERRRSFSVWSLLAL*NQNTSNAIGRALGR
Trigger: TCGTCCGAGAGCTCGGCCGATCGCATTAGATGTGTTCTGATTGCACAAGGCCAGGAGAGACCACACTGAAAACGATCGTCTCCTTTCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp AGGAACACACAAATGAGGGCGTCTGGCAATGAAGGTACCCTGCCTTaGCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTAGGATTG +
Preference number: 1 (lower is better)
Translates to: RNTQMRASGNEGTLP*QVRQFPSHLPALGL
Trigger: CAATCCTAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTCATTGCCAGACGCCCTCATTTGTGTGTTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 90 bp CTTGCTCCCCAGAGACCTGCAATACGTGCAGGAGGCGGCAGGGTTTaGCAGAGAATGGTCTGGAGATCTTTGGAACCTTTAAAAGAACTT +
Preference number: 1 (lower is better)
Translates to: LAPQRPAIRAGGGRV*QRMVWRSLEPLKEL
Trigger: AAGTTCTTTTAAAGGTTCCAAAGATCTCCAGACCATTCTCTGCCAAACCCTGCCGCCTCCTGCACGTATTGCAGGTCTCTGGGGAGCAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 90 bp CAAGGCTGGGAGCTAGTAACATTTCTGAAAGGAACTGATGATGTTTaGATCAACTTATTGGTCCGGATTTTCCTCAGCCGCCAGAACCTG +
Preference number: 1 (lower is better)
Translates to: QGWELVTFLKGTDDV*INLLVRIFLSRQNL
Trigger: CAGGTTCTGGCGGCTGAGGAAAATCCGGACCAATAAGTTGATTCAAACATCATCAGTTCCTTTCAGAAATGTTACTAGCTCCCAGCCTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 90 bp ATTTCACATACATCGTCAAAGGTGGGGAAACGCCGTTTGGGCTCTTaGGGCAACATCAGACGGTTTAAGGTTATTTCCTTTCCACATAAT +
Preference number: 1 (lower is better)
Translates to: ISHTSSKVGKRRLGS*GNIRRFKVISFPHN
Trigger: ATTATGTGGAAAGGAAATAACCTTAAACCGTCTGATGTTGCCTCAAGAGCCCAAACGGCGTTTCCCCACCTTTGACGATGTATGTGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp TTAGAGACCTCTCTCATTCACCCTTATCCCGGGATAATTTCTCACTaGTTTTGCGGAGGTGCAGACAATGGATTCCAGATCTTATTTCAT +
Preference number: 1 (lower is better)
Translates to: LETSLIHPYPGIISH*FCGGADNGFQILFH
Trigger: ATGAAATAAGATCTGGAATCCATTGTCTGCACCTCCGCAAAAGCAGTGAGAAATTATCCCGGGATAAGGGTGAATGAGAGAGGTCTCTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp ACCTCTCTCATTCACCCTTATCCCGGGATAATTTCTCACTGCTTTTaGGGAGGTGCAGACAATGGATTCCAGATCTTATTTCATGATAAT +
Preference number: 1 (lower is better)
Translates to: TSLIHPYPGIISHCF*GGADNGFQILFHDN
Trigger: ATTATCATGAAATAAGATCTGGAATCCATTGTCTGCACCTCCGCAAAAGCAGTGAGAAATTATCCCGGGATAAGGGTGAATGAGAGAGGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 90 bp CTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTAGGATATaGAATAATTGCTTGAGAGAAAGTGGCTTCCTTGGCCAAGGAAAA +
Preference number: 1 (lower is better)
Translates to: LEVSSFPFDQSFRRI*NNCLRESGFLGQGK
Trigger: TTTTCCTTGGCCAAGGAAGCCACTTTCTCTCAAGCAATTATTTCATATCCTACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 90 bp CCACTGGGAATAGTCCCGATGTATCCAGACGGTAAAAATCAAAGCTaGAATACATCTCCCTTCACTTTGCATTATTTTGCCATTATATGC +
Preference number: 1 (lower is better)
Translates to: PLGIVPMYPDGKNQS*NTSPFTLHYFAIIC
Trigger: GCATATAATGGCAAAATAATGCAAAGTGAAGGGAGATGTATTTCAGCTTTGATTTTTACCGTCTGGATACATCGGGACTATTCCCAGTGG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 90 bp GTAGATGACACAAATATAATAAATGTGAGATTCTCTCTATGCAGATaGTGGCAAGGCTGGGAGCTAGTAACATTTCTGAAAGGAACTGAT +
Preference number: 1 (lower is better)
Translates to: VDDTNIINVRFSLCR*WQGWELVTFLKGTD
Trigger: ATCAGTTCCTTTCAGAAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATTTATTATATTTGTGTCATCTAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 90 bp GATGACACAAATATAATAAATGTGAGATTCTCTCTATGCAGATGCTaGCAAGGCTGGGAGCTAGTAACATTTCTGAAAGGAACTGATGAT +
Preference number: 1 (lower is better)
Translates to: DDTNIINVRFSLCRC*QGWELVTFLKGTDD
Trigger: ATCATCAGTTCCTTTCAGAAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATTTATTATATTTGTGTCATC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCGGGAGCCGGGCCCGGTaGGTTAAGATCGCAGGGCTG +
Preference number: 2 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGGSRAR*VKIAGL
Trigger: CAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCC...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CAA 90 bp AGGCGCGTCCATCGCGTCTCTCGCACGTCACACGCGTGGGGCGCGTaGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTGTGGTCTCTC +
Preference number: 2 (lower is better)
Translates to: RRVHRVSRTSHAWGA*PCKERRRSFSVWSL
Trigger: GAGAGACCACACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGACGTGCGAGAGACGCGATGGACGCGCCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CAA 90 bp TGTTTCCGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTaGGATATTTCTAGGCCACTCTCCCTCCAGGAGCCGGCGCCCCGG +
Preference number: 2 (lower is better)
Translates to: CFRTGRGGGGEASDS*DISRPLSLQEPAPR
Trigger: CCGGGGCGCCGGCTCCTGGAGGGAGAGTGGCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACGGAAACA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCGCCGGCACCAAAAATTaGAGCCTCCGCCTGGTCTCC +
Preference number: 2 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGAGTKN*SLRLVS
Trigger: GGAGACCAGGCGGAGGCTGCAATTTTTGGTGCCGGC...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTTCTAGGGCTGGGCCATaGAGATCAGAAGTGCTAAAC +
Preference number: 2 (lower is better)
Translates to: VTRVGRVALQGKETIVFSSRAGP*RSEVLN
Trigger: GTTTAGCACTTCTGATCTTCATGGCCCAGCCCTAGA...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTAGCCCCTCCAGCGGCTaGTTCTATGTCCTCAACACG +
Preference number: 2 (lower is better)
Translates to: TCEVESVKAALPHPDSSCSPSSG*FYVLNT
Trigger: CGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCT...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTCCCGCTTTAGGATTGTaGCGGTGGGGTGTTTCCGTA +
Preference number: 2 (lower is better)
Translates to: TCEVESVKAALPHPDSSCPALGL*RWGVSV
Trigger: TACGGAAACACCCCACCGTCACAATCCTAAAGCGGG...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTATGGAGGGCGGGGACTaGGAGAGTTTCCTAAAAATA +
Preference number: 2 (lower is better)
Translates to: VTRVGRVALQGKETIVFSMEGGD*ESFLKI
Trigger: TATTTTTAGGAAACTCTCGCAGTCCCCGCCCTCCAT...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTTTACAGAAATGTGGGTaGTTGTGCCGCCCTCCTCCC +
Preference number: 2 (lower is better)
Translates to: TCEVESVKAALPHPDSSCLQKCG*LCRPPP
Trigger: GGGAGGAGGGCGGCACAAGCACCCACATTTCTGTAA...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCAGGTACCGAGAGGACTaGAACAACGCAAAAGGGCCA +
Preference number: 2 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGRYRED*NNAKGP
Trigger: TGGCCCTTTTGCGTTGTTTCAGTCCTCTCGGTACCT...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTACTTGGGCCCTTTTGGTaGCCTGAGACGAGCTTCCTA +
Preference number: 2 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALLGPFW*PETSFL
Trigger: TAGGAAGCTCGTCTCAGGTCACCAAAAGGGCCCAAG...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTCAGAAGAGAATGAAATaGTACATACCCCTCCGAAGG +
Preference number: 2 (lower is better)
Translates to: VTRVGRVALQGKETIVFSQKRMK*YIPLRR
Trigger: CCTTCGGAGGGGTATGTACCATTTCATTCTCTTCTG...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGGCCCAAGAAAGGAGCTaGGCTGCCAGAAGTGAGAAA +
Preference number: 2 (lower is better)
Translates to: RTGRGGGGEASDSLDISRAQERS*AARSEK
Trigger: TTTCTCACTTCTGGCAGCCCAGCTCCTTTCTTGGGC...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTCGCAGGCCTCTGAGCTaGGAAAAGAGAGTGACTACA +
Preference number: 2 (lower is better)
Translates to: TCEVESVKAALPHPDSSCRRPLS*EKRVTT
Trigger: TGTAGTCACTCTCTTTTCCCAGCTCAGAGGCCTGCG...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTCGCACGTCACACGCGTaGGGCGCGTTGCCCTGCAAG +
Preference number: 2 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRRTSHA*GALPCK
Trigger: CTTGCAGGGCAACGCGCCCCACGCGTGTGACGTGCG...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CAA 90 bp TGCAAGGAAAGGAGACGATCGTTTTCAGTGTGGTCTCTCCTGGCCTaGTGCAATCAGAACACATCTAATGCGATCGGCCGAGCTCTCGGA +
Preference number: 2 (lower is better)
Translates to: CKERRRSFSVWSLLA*CNQNTSNAIGRALG
Trigger: TCCGAGAGCTCGGCCGATCGCATTAGATGTGTTCTGATTGCACAAGGCCAGGAGAGACCACACTGAAAACGATCGTCTCCTTTCCTTGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCGAAAACAGAAGAGAATaGAATGGTACATACCCCTCC +
Preference number: 2 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGENRRE*NGTYPS
Trigger: GGAGGGGTATGTACCATTTCATTCTCTTCTGTTTTC...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCCTGACACACAGGCTTTaGTTAAAAAGGGATCGGATT +
Preference number: 2 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGLTHRL*LKRDRI
Trigger: AATCCGATCCCTTTTTAATCAAAGCCTGTGTGTCAG...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTAGCCCTTTTGGTGACCTaGGACGAGCTTCCTAACTTC +
Preference number: 2 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALALLVT*DELPNF
Trigger: GAAGTTAGGAAGCTCGTCTCAGGTCACCAAAAGGGC...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTTCAGCCGCCAGAACCTaGTCTGCCGGCCGGCACCAA +
Preference number: 2 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRSAART*SAGRHQ
Trigger: TTGGTGCCGGCCGGCAGAGCAGGTTCTGGCGGCTGA...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCTTAAAGAAGTGCACCTaGAGAATTCTGACACACAGG +
Preference number: 2 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGLKKCT*RILTHR
Trigger: CCTGTGTGTCAGAATTCTGCAGGTGCACTTCTTTAA...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTTCTCTCCTGGCCTTGTaGAATCAGAACACATCTAAT +
Preference number: 2 (lower is better)
Translates to: VTRVGRVALQGKETIVFSSLLAL*NQNTSN
Trigger: ATTAGATGTGTTCTGATTGCACAAGGCCAGGAGAGA...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAATGGGGCGCGTTGCCCTaGAAGGAAAGGAGACGATCG +
Preference number: 2 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEWGALP*KERRRS
Trigger: CGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCA...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCGAAGGGAGGGTAACATaGAAAAGGGTGGTTGGGAGA +
Preference number: 2 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGEGRVT*KRVVGR
Trigger: TCTCCCAACCACCCTTTTCCATGTTACCCTCCCTTC...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGTCTCTATGCAGATGCTaGCAAGGCTGGGAGCTAGTA +
Preference number: 2 (lower is better)
Translates to: RTGRGGGGEASDSLDISRSLCRC*QGWELV
Trigger: TACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGA...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTACGACTGGGCGCCTGTaGCCCACACGCTCTCAGGAC +
Preference number: 2 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRTTGRL*PTRSQD
Trigger: GTCCTGAGAGCGTGTGGGCCACAGGCGCCCAGTCGT...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTTTACCTACTGGAGAATaGGGCTTTCTCGGTCGCCTT +
Preference number: 2 (lower is better)
Translates to: TCEVESVKAALPHPDSSCLPTGE*GFLGRL
Trigger: AAGGCGACCGAGAAAGCCCCATTCTCCAGTAGGTAA...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CAA 90 bp AAGATCTTTTTAGGTGACGGAATCCTCACCCAAACAGGACATTTCTaGCTCCCCAGAGACCTGCAATACGTGCAGGAGGCGGCAGGGTTT +
Preference number: 2 (lower is better)
Translates to: KIFLGDGILTQTGHF*LPRDLQYVQEAAGF
Trigger: AAACCCTGCCGCCTCCTGCACGTATTGCAGGTCTCTGGGGAGCAAGAAATGTCCTGTTTGGGTGAGGATTCCGTCACCTAAAAAGATCTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCATTCCCGTAACAATGTaGGGAAGGGAGGGTAACATG +
Preference number: 2 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGIPVTM*GREGNM
Trigger: CATGTTACCCTCCCTTCCTCACATTGTTACGGGAAT...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTGGGATAATTTCTCACTaGTTTTGCGGAGGTGCAGAC +
Preference number: 2 (lower is better)
Translates to: TCEVESVKAALPHPDSSCGIISH*FCGGAD
Trigger: GTCTGCACCTCCGCAAAAGCAGTGAGAAATTATCCC...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTACGCGTGGGGCGCGTTaGCCTGCAAGGAAAGGAGAC +
Preference number: 2 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRTRGAR*PARKGD
Trigger: GTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGT...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTAGAGAACCGATATTGTTaGTCCGTTGTACGCCTCAGT +
Preference number: 2 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALENRYC*SVVRLS
Trigger: ACTGAGGCGTACAACGGAGCAACAATATCGGTTCTC...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTTTAAGATCGCAGGGCTaGGCGGGGAGGTACCGAGAG +
Preference number: 2 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRLRSQG*AGRYRE
Trigger: CTCTCGGTACCTCCCCGCCCAGCCCTGCGATCTTAA...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTGTAACGTCTAGCTCTTaGCCATTGCATTCCTCTCAA +
Preference number: 2 (lower is better)
Translates to: TCEVESVKAALPHPDSSCVTSSS*PLHSSQ
Trigger: TTGAGAGGAATGCAATGGCCAAGAGCTAGACGTTAC...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCGGAACTGATGATGTTTaGATCAACTTATTGGTCCGG +
Preference number: 2 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGGTDDV*INLLVR
Trigger: CCGGACCAATAAGTTGATTCAAACATCATCAGTTCC...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGGGAGGAACACACAAATaGGGGCGTCTGGCAATGAAG +
Preference number: 2 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVGGTHK*GRLAMK
Trigger: CTTCATTGCCAGACGCCCTCATTTGTGTGTTCCTCC...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTCGCCAGAACCTGCTCTaGCGGCCGGCACCAAAAATT +
Preference number: 2 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRRQNLL*RPAPKI
Trigger: AATTTTTGGTGCCGGCCGGCAGAGCAGGTTCTGGCG...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCATCTTTAAGGGGTATTaGAAAGATCTCGTCTACTTT +
Preference number: 2 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGIFKGY*KDLVYF
Trigger: AAAGTAGACGAGATCTTTGCAATACCCCTTAAAGAT...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CAA 90 bp GGAGGGAAAAATGCCTCATTCATAAAGCATCTTGTAAGAAAGCAATaGTTACAGAAATGTGGGTGCTTGTGCCGCCCTCCTCCCCACGTC +
Preference number: 2 (lower is better)
Translates to: GGKNASFIKHLVRKQ*LQKCGCLCRPPPHV
Trigger: GACGTGGGGAGGAGGGCGGCACAAGCACCCACATTTCTGTAACAATTGCTTTCTTACAAGATGCTTTATGAATGAGGCATTTTTCCCTCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTTTTGAATCAACTTATTaGTCCGGATTTTCCTCAGCC +
Preference number: 2 (lower is better)
Translates to: TCEVESVKAALPHPDSSCFESTY*SGFSSA
Trigger: GGCTGAGGAAAATCCGGACCAATAAGTTGATTCAAA...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAACAGCTCTCAAAGCATTaGCACCAACGTTTCTCCGAT +
Preference number: 2 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEQLSKH*HQRFSD
Trigger: ATCGGAGAAACGTTGGTGTCAATGCTTTGAGAGCTG...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGATTTTGTTTTGGGACTaGGCGTTTAGGAGTGGGCAG +
Preference number: 2 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVILFWD*AFRSGQ
Trigger: CTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAAT...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAACTGCTTTTGCGGAGGTaGAGACAATGGATTCCAGAT +
Preference number: 2 (lower is better)
Translates to: LFCFGTERLGVGRDQMSELLLRR*RQWIPD
Trigger: ATCTGGAATCCATTGTCTGCACCTCCGCAAAAGCAG...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGAAACAAGTGCACGTCTaGGAGGGAAAAATGCCTCAT +
Preference number: 2 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVKQVHV*EGKMPH
Trigger: ATGAGGCATTTTTCCCTCCCAGACGTGCACTTGTTT...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTAGATGCTGGCAAGGCTaGGAGCTAGTAACATTTCTG +
Preference number: 2 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRRCWQG*ELVTFL
Trigger: CAGAAATGTTACTAGCTCCCAGCCTTGCCAGCATCT...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGAAAATGCAAGGTAATTaGGGGTGTAGGAGTGAAGGT +
Preference number: 2 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVKMQGN*GCRSEG
Trigger: ACCTTCACTCCTACACCCCCAATTACCTTGCATTTT...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAAGCTTCTTTAAAGAAGTaGACCTGCAGAATTCTGACA +
Preference number: 2 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEASLKK*TCRILT
Trigger: TGTCAGAATTCTGCAGGTGCACTTCTTTAAAGAAGC...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCATCGAAAGAACCGAAGTaGAAAATCCGGACGGTTGTC +
Preference number: 2 (lower is better)
Translates to: KIKKFVRLSQPALKALTPSKEPK*KIRTVV
Trigger: GACAACCGTCCGGATTTTCCACTTCGGTTCTTTCGA...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR GCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTAAATTAAAAAGTTCGTaGGTCTCAGTCAACCAGCTC +
Preference number: 2 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFKLKSS*VSVNQL
Trigger: GAGCTGGTTGACTGAGACGCACGAACTTTTTAATTT...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CAA 90 bp TTTTTCTCTGTACCTTATAGATTGTGTAGGAAGCCCAAGTCCTCTTaGAAGAAGCTCATAAACCATGCGGGCAAAGCTTTGGAAAACAGA +
Preference number: 2 (lower is better)
Translates to: FFSVPYRLCRKPKSS*KKLINHAGKALENR
Trigger: TCTGTTTTCCAAAGCTTTGCCCGCATGGTTTATGAGCTTCTTCAAAGAGGACTTGGGCTTCCTACACAATCTATAAGGTACAGAGAAAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR TCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTCTTAAACGTCTCCCTTaGCTTAAAAGGCAAACTATT +
Preference number: 2 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRLKRLP*LKRQTI
Trigger: AATAGTTTGCCTTTTAAGTCAAGGGAGACGTTTAAG...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 72 bp CTCTGCCGGCCGGCACCAAAAATTGCAGCCTCCGCCTaGTCTCCACAGGCCTCCCGCCCCGCCCTCGCCCTC +
Preference number: 3 (lower is better)
Translates to: LCRPAPKIAASA*SPQASRPALAL
Trigger: GAGGGCGAGGGCGGGGCGGGAGGCCTGTGGAGACCAGGCGGAGGCTGCAATTTTTGGTGCCGGCCGGCAGAG
72% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp CCGCCAGAACCTGCTCTGCCGGCCGGCACCAAAAATTaGAGCCTCCGCCTGGTCTCCACAGGCCTCCCGCCC +
Preference number: 3 (lower is better)
Translates to: PPEPALPAGTKN*SLRLVSTGLPP
Trigger: GGGCGGGAGGCCTGTGGAGACCAGGCGGAGGCTGCAATTTTTGGTGCCGGCCGGCAGAGCAGGTTCTGGCGG
69% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 72 bp GGAAGGGCCCGCGCAGTCGGCAGCCCCTCCAGCGGCTaGTTCTATGTCCTCAACACGACTGGGCGCCTGTGG +
Preference number: 3 (lower is better)
Translates to: GRARAVGSPSSG*FYVLNTTGRLW
Trigger: CCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGCCGACTGCGCGGGCCCTTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 72 bp AGGCGCGTCCATCGCGTCTCTCGCACGTCACACGCGTaGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCG +
Preference number: 3 (lower is better)
Translates to: RRVHRVSRTSHA*GALPCKERRRS
Trigger: CGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGACGTGCGAGAGACGCGATGGACGCGCCT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CAA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGCCAGCTCTCAAAGCATaGACACCAACGTTTCTCCGA +
Preference number: 3 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRPALKA*TPTFLR
Trigger: TCGGAGAAACGTTGGTGTCAATGCTTTGAGAGCTGG...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp CGACTGGGCGCCTGTGGCCCACACGCTCTCAGGACCTaGACAGTAAGAGCAAGGCGCGTCCATCGCGTCTCT +
Preference number: 3 (lower is better)
Translates to: RLGACGPHALRT*TVRARRVHRVS
Trigger: AGAGACGCGATGGACGCGCCTTGCTCTTACTGTGCAGGTCCTGAGAGCGTGTGGGCCACAGGCGCCCAGTCG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp TTGGTCCGGATTTTCCTCAGCCGCCAGAACCTGCTCTaGCGGCCGGCACCAAAAATTGCAGCCTCCGCCTGG +
Preference number: 3 (lower is better)
Translates to: LVRIFLSRQNLL*RPAPKIAASAW
Trigger: CCAGGCGGAGGCTGCAATTTTTGGTGCCGGCCGGCAGAGCAGGTTCTGGCGGCTGAGGAAAATCCGGACCAA
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp GGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTaGTTGGGCCCTTTTGGTGACCTGAGACGAGCTTCC +
Preference number: 3 (lower is better)
Translates to: GVGDGLQCGPNS*LGPFGDLRRAS
Trigger: GGAAGCTCGTCTCAGGTCACCAAAAGGGCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp GTCTCTCGCACGTCACACGCGTGGGGCGCGTTGCCCTaGAAGGAAAGGAGACGATCGTTTTCAGTGTGGTCT +
Preference number: 3 (lower is better)
Translates to: VSRTSHAWGALP*KERRRSFSVWS
Trigger: AGACCACACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGACGTGCGAGAGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp ATCGCGTCTCTCGCACGTCACACGCGTGGGGCGCGTTaGCCTGCAAGGAAAGGAGACGATCGTTTTCAGTGT +
Preference number: 3 (lower is better)
Translates to: IASLARHTRGAR*PARKGDDRFQC
Trigger: ACACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGACGTGCGAGAGACGCGAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp ACTTATTGGTCCGGATTTTCCTCAGCCGCCAGAACCTaGTCTGCCGGCCGGCACCAAAAATTGCAGCCTCCG +
Preference number: 3 (lower is better)
Translates to: TYWSGFSSAART*SAGRHQKLQPP
Trigger: CGGAGGCTGCAATTTTTGGTGCCGGCCGGCAGAGCAGGTTCTGGCGGCTGAGGAAAATCCGGACCAATAAGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp CAGGACATTTCTTGCTCCCCAGAGACCTGCAATACGTaGAGGAGGCGGCAGGGTTTGGCAGAGAATGGTCTG +
Preference number: 3 (lower is better)
Translates to: QDISCSPETCNT*RRRQGLAENGL
Trigger: CAGACCATTCTCTGCCAAACCCTGCCGCCTCCTGCACGTATTGCAGGTCTCTGGGGAGCAAGAAATGTCCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp TCACCCAAACAGGACATTTCTTGCTCCCCAGAGACCTaGAATACGTGCAGGAGGCGGCAGGGTTTGGCAGAG +
Preference number: 3 (lower is better)
Translates to: SPKQDISCSPET*NTCRRRQGLAE
Trigger: CTCTGCCAAACCCTGCCGCCTCCTGCACGTATTGCAGGTCTCTGGGGAGCAAGAAATGTCCTGTTTGGGTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CAA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTTGGTCTCTCCTGGCCTaGTGCAATCAGAACACATCT +
Preference number: 3 (lower is better)
Translates to: VTRVGRVALQGKETIVFSWSLLA*CNQNTS
Trigger: AGATGTGTTCTGATTGCACAAGGCCAGGAGAGACCA...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 72 bp AGACAATTCCCATCCCATCTCCCCGCTTTAGGATTGTaGCGGTGGGGTGTTTCCGTACTGGCAGAGGTGGAG +
Preference number: 3 (lower is better)
Translates to: RQFPSHLPALGL*RWGVSVLAEVE
Trigger: CTCCACCTCTGCCAGTACGGAAACACCCCACCGTCACAATCCTAAAGCGGGGAGATGGGATGGGAATTGTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 72 bp GGTTCTATCTCGCTGGAGCAAGGAGGAACACACAAATaGGGGCGTCTGGCAATGAAGGTACCCTGCCTTGCC +
Preference number: 3 (lower is better)
Translates to: GSISLEQGGTHK*GRLAMKVPCLA
Trigger: GGCAAGGCAGGGTACCTTCATTGCCAGACGCCCTCATTTGTGTGTTCCTCCTTGCTCCAGCGAGATAGAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp CAAATGAGGGCGTCTGGCAATGAAGGTACCCTGCCTTaGCAAGTAAGACAATTCCCATCCCATCTCCCCGCT +
Preference number: 3 (lower is better)
Translates to: QMRASGNEGTLP*QVRQFPSHLPA
Trigger: AGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTCATTGCCAGACGCCCTCATTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CAA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTGGCCGGCACCAAAAATaGCAGCCTCCGCCTGGTCTC +
Preference number: 3 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRGRHQK*QPPPGL
Trigger: GAGACCAGGCGGAGGCTGCAATTTTTGGTGCCGGCC...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CAA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCAATTTCTCACTGCTTTaGCGGAGGTGCAGACAATGG +
Preference number: 3 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGNFSLL*RRCRQW
Trigger: CCATTGTCTGCACCTCCGCAAAAGCAGTGAGAAATT...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CAA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCTCTAGCTCTTGGCCATaGCATTCCTCTCAACAGTTC +
Preference number: 3 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGSSSWP*HSSQQF
Trigger: GAACTGTTGAGAGGAATGCAATGGCCAAGAGCTAGA...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 72 bp AGCAAGGAGGAACACACAAATGAGGGCGTCTGGCAATaGAGGTACCCTGCCTTGCCAAGTAAGACAATTCCC +
Preference number: 3 (lower is better)
Translates to: SKEEHTNEGVWQ*RYPALPSKTIP
Trigger: GGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTCATTGCCAGACGCCCTCATTTGTGTGTTCCTCCTTGCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 72 bp CGTGCAGGAGGCGGCAGGGTTTGGCAGAGAATGGTCTaGAGATCTTTGGAACCTTTAAAAGAACTTGCGAAG +
Preference number: 3 (lower is better)
Translates to: RAGGGRVWQRMV*RSLEPLKELAK
Trigger: CTTCGCAAGTTCTTTTAAAGGTTCCAAAGATCTCCAGACCATTCTCTGCCAAACCCTGCCGCCTCCTGCACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 72 bp CATTGCATTCCTCTCAACAGTTCTAGGGCTGGGCCATaGAGATCAGAAGTGCTAAACGAAGCTAGGGGTTGG +
Preference number: 3 (lower is better)
Translates to: HCIPLNSSRAGP*RSEVLNEARGW
Trigger: CCAACCCCTAGCTTCGTTTAGCACTTCTGATCTTCATGGCCCAGCCCTAGAACTGTTGAGAGGAATGCAATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CAA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTATCTGTACCTTATAGATaGTGTAGGAAGCCCAAGTCC +
Preference number: 3 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALSVPYR*CRKPKS
Trigger: GGACTTGGGCTTCCTACACAATCTATAAGGTACAGA...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 72 bp ACATCGTCAAAGGTGGGGAAACGCCGTTTGGGCTCTTaGGGCAACATCAGACGGTTTAAGGTTATTTCCTTT +
Preference number: 3 (lower is better)
Translates to: TSSKVGKRRLGS*GNIRRFKVISF
Trigger: AAAGGAAATAACCTTAAACCGTCTGATGTTGCCTCAAGAGCCCAAACGGCGTTTCCCCACCTTTGACGATGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 72 bp TTTCACATACATCGTCAAAGGTGGGGAAACGCCGTTTaGGCTCTTGAGGCAACATCAGACGGTTTAAGGTTA +
Preference number: 3 (lower is better)
Translates to: FHIHRQRWGNAV*ALEATSDGLRL
Trigger: TAACCTTAAACCGTCTGATGTTGCCTCAAGAGCCCAAACGGCGTTTCCCCACCTTTGACGATGTATGTGAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CAA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTGAAGCTTCGGATTCCTaGGATATTTCTAGGCCACTC +
Preference number: 3 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFREASDS*DISRPL
Trigger: GAGTGGCCTAGAAATATCCAAGGAATCCGAAGCTTC...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 72 bp TCCCACTTTGGGGGAGAAGTTAAAGATCTTTTTAGGTaGCGGAATCCTCACCCAAACAGGACATTTCTTGCT +
Preference number: 3 (lower is better)
Translates to: SHFGGEVKDLFR*RNPHPNRTFLA
Trigger: AGCAAGAAATGTCCTGTTTGGGTGAGGATTCCGTCACCTAAAAAGATCTTTAACTTCTCCCCCAAAGTGGGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR TCA 72 bp ACAAAGCTCAAAGGGGCTTGCCTTAAACGTCTCCCTTaGCTTAAAAGGCAAACTATTGCGTTAATCCTACTG +
Preference number: 3 (lower is better)
Translates to: TKLKGACLKRLP*LKRQTIALILL
Trigger: CAGTAGGATTAACGCAATAGTTTGCCTTTTAAGTCAAGGGAGACGTTTAAGGCAAGCCCCTTTGAGCTTTGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CAA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTAAGCCCAAGTCCTCTTaGAAGAAGCTCATAAACCAT +
Preference number: 3 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRKPKSS*KKLINH
Trigger: ATGGTTTATGAGCTTCTTCAAAGAGGACTTGGGCTT...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR-3UTR CAA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTTCTGACACACAGGCTTaGATTAAAAAGGGATCGGAT +
Preference number: 3 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRSDTQA*IKKGSD
Trigger: ATCCGATCCCTTTTTAATCAAAGCCTGTGTGTCAGA...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR GCA 72 bp ATATGCCAAAACAAGTGCACGTCTGGGAGGGAAAAATaGCTCATTCATAAAGCATCTTGTAAGAAAGCAATT +
Preference number: 3 (lower is better)
Translates to: ICQNKCTSGREK*LIHKASCKKAI
Trigger: AATTGCTTTCTTACAAGATGCTTTATGAATGAGGCATTTTTCCCTCCCAGACGTGCACTTGTTTTGGCATAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CCA 72 bp TTATTATCAGTATTACTAAACTCGAAAGAACCGAAGTaGAAAATCCGGACGGTTGTCTCCAAATGTATCTTG +
Preference number: 3 (lower is better)
Translates to: LLSVLLNSKEPK*KIRTVVSKCIL
Trigger: CAAGATACATTTGGAGACAACCGTCCGGATTTTCCACTTCGGTTCTTTCGAGTTTAGTAATACTGATAATAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGGCAGACCCCCTCCCCTaGCACCTCCACCGGAATTGG +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRADPLP*HLHRNW
Trigger: CCAATTCCGGTGGAGGTGGCAGGGGAGGGGGTCTGC...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
72% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGCGAGGAGAGATGCATTaGGGCATTCAGGGGGCGACA +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRRGEMH*GIQGAT
Trigger: TGTCGCCCCCTGAATGCCTCAATGCATCTCTCCTCG...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
69% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGGCCCTTTTGGTGACCTaGGACGAGCTTCCTAACTTC +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRALLVT*DELPNF
Trigger: GAAGTTAGGAAGCTCGTCTCAGGTCACCAAAAGGGC...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGGGAGGAACACACAAATaGGGGCGTCTGGCAATGAAG +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRGGTHK*GRLAMK
Trigger: CTTCATTGCCAGACGCCCTCATTTGTGTGTTCCTCC...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGATATTCTTTCGGGAGTaGAGGTCACTCGGGTCTGTG +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRIFFRE*RSLGSV
Trigger: CACAGACCCGAGTGACCTGCACTCCCGAAAGAATAT...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCTCAGCCGCCAGAACCTaGTCTGCCGGCCGGCACCAA +
Preference number: 4 (lower is better)
Translates to: AAPPAADSMSSTRLGACGSAART*SAGRHQ
Trigger: TTGGTGCCGGCCGGCAGAGCAGGTTCTGGCGGCTGA...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGTCTCTATGCAGATGCTaGCAAGGCTGGGAGCTAGTA +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRSLCRC*QGWELV
Trigger: TACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGA...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCACGACTGGGCGCCTGTaGCCCACACGCTCTCAGGAC +
Preference number: 4 (lower is better)
Translates to: AAPPAADSMSSTRLGACGTTGRL*PTRSQD
Trigger: GTCCTGAGAGCGTGTGGGCCACAGGCGCCCAGTCGT...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGCAGCTCTCAAAGCATTaGCACCAACGTTTCTCCGAT +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRQLSKH*HQRFSD
Trigger: ATCGGAGAAACGTTGGTGTCAATGCTTTGAGAGCTG...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTAGTTCTGCAGGGCCGTaGGCGCGGCGCAAATGGCCG +
Preference number: 4 (lower is better)
Translates to: VTRVGRVALQGKETIVFSSSAGP*ARRKWP
Trigger: CGGCCATTTGCGCCGCGCTCACGGCCCTGCAGAACT...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGCTAGCTCTTGGCCATTaGATTCCTCTCAACAGTTCT +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRLALGH*IPLNSS
Trigger: AGAACTGTTGAGAGGAATGCAATGGCCAAGAGCTAG...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGAAACAGGACATTTCTTaGTCCCCAGAGACCTGCAAT +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRKQDIS*SPETCN
Trigger: ATTGCAGGTCTCTGGGGAGCAAGAAATGTCCTGTTT...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTTCCCCGGCTCCAGGATaGGGCTGGGTCGGCTGTTCC +
Preference number: 4 (lower is better)
Translates to: VTRVGRVALQGKETIVFSSPAPG*GWVGCS
Trigger: GGAACAGCCGACCCAGCCCCATCCTGGAGCCGGGGA...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTCGCACGTCACACGCGTaGGGCGCGTTGCCCTGCAAG +
Preference number: 4 (lower is better)
Translates to: VTRVGRVALQGKETIVFSRTSHA*GALPCK
Trigger: CTTGCAGGGCAACGCGCCCCACGCGTGTGACGTGCG...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGGAAAACAGAAGAGAATaGAATGGTACATACCCCTCC +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRENRRE*NGTYPS
Trigger: GGAGGGGTATGTACCATTTCATTCTCTTCTGTTTTC...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCAGAGGCTGTCACCCATaGCCGCGTCCAGGCCGTGGT +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGRGCHP*PRPGRG
Trigger: ACCACGGCCTGGACGCGGGCATGGGTGACAGCCTCT...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGGGTCCAATAGATTCATaGCGCTGTTATTGGCATCTT +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRGPIDS*RCYWHL
Trigger: AAGATGCCAATAACAGCGGCATGAATCTATTGGACC...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTTCTTGCCGCTGCCGTTaGCCCCAGGGATGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: VTRVGRVALQGKETIVFSSCRCR*PQGCCW
Trigger: CCAGCAACATCCCTGGGGGCAACGGCAGCGGCAAGA...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCCCGTGGTGCGCCGAATaGAGCAGCACGTCCGGCCGG +
Preference number: 4 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGPWCAE*SSTSGR
Trigger: CCGGCCGGACGTGCTGCTGCATTCGGCGCACCACGG...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGGCTTCTTTAAAGAAGTaGACCTGCAGAATTCTGACA +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRASLKK*TCRILT
Trigger: TGTCAGAATTCTGCAGGTGCACTTCTTTAAAGAAGC...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGTCAAGGCCCGAGAGCTaGGGCAAGGCGGCCCGAGGC +
Preference number: 4 (lower is better)
Translates to: RTGRGGGGEASDSLDISRSRPES*GKAARG
Trigger: GCCTCGGGCCGCCTTGCCCCAGCTCTCGGGCCTTGA...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGCTTTACAAAGTTGCTTaGTGGCCAACAGCATATTCT +
Preference number: 4 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRLYKVA*WPTAYS
Trigger: AGAATATGCTGTTGGCCACCAAGCAACTTTGTAAAG...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CAA 72 bp CATCGCGTCTCTCGCACGTCACACGCGTGGGGCGCGTaGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTG +
Preference number: 4 (lower is better)
Translates to: HRVSRTSHAWGA*PCKERRRSFSV
Trigger: CACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGACGTGCGAGAGACGCGATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTACACCTCGCCGGTGTTaGCAGACATGCCTCCCAGGA +
Preference number: 4 (lower is better)
Translates to: VTRVGRVALQGKETIVFSTPRRC*QTCLPG
Trigger: TCCTGGGAGGCATGTCTGTCAACACCGGCGAGGTGT...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTACCCGCGTCCAGGCCGTaGTGCGCCGAATGCAGCAGC +
Preference number: 4 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALPASRP*CAECSS
Trigger: GCTGCTGCATTCGGCGCACCACGGCCTGGACGCGGG...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTTTAAGATCGCAGGGCTaGGCGGGGAGGTACCGAGAG +
Preference number: 4 (lower is better)
Translates to: VTRVGRVALQGKETIVFSLRSQG*AGRYRE
Trigger: CTCTCGGTACCTCCCCGCCCAGCCCTGCGATCTTAA...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGTGGTTGGGAGACGGGTaGGGTGAGATGGAGGGCGGG +
Preference number: 4 (lower is better)
Translates to: RTGRGGGGEASDSLDISRWLGDG*GEMEGG
Trigger: CCCGCCCTCCATCTCACCTCACCCGTCTCCCAACCA...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCGAGACCTGCAATACGTaGAGGAGGCGGCAGGGTTTG +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGETCNT*RRRQGL
Trigger: CAAACCCTGCCGCCTCCTGCACGTATTGCAGGTCTC...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCCCCGCTTTAGGATTGTaGCGGTGGGGTGTTTCCGTA +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGPALGL*RWGVSV
Trigger: TACGGAAACACCCCACCGTCACAATCCTAAAGCGGG...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCAGCACTGCCACATCCTaGCTCCTCCTGTCTTTCGCT +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGSTATS*LLLSFA
Trigger: AGCGAAAGACAGGAGGAGTCAGGATGTGGCAGTGCT...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGTCCGAACCCACTTCTTaGCGCTGCCGTTGCCCCCAG +
Preference number: 4 (lower is better)
Translates to: RTGRGGGGEASDSLDISRSEPTS*RCRCPQ
Trigger: CTGGGGGCAACGGCAGCGGCAAGAAGTGGGTTCGGA...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCACGCGTGGGGCGCGTTaGCCTGCAAGGAAAGGAGAC +
Preference number: 4 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGTRGAR*PARKGD
Trigger: GTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGT...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTCCCCAGGGATGTTGCTaGGGCTGGTGCAGTGGGTTC +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCPQGCC*GWCSGF
Trigger: GAACCCACTGCACCAGCCCCAGCAACATCCCTGGGG...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGTCTTCCATTCCGGGATaGCCGAGGCCGTGCAGCGAG +
Preference number: 4 (lower is better)
Translates to: RTGRGGGGEASDSLDISRSSIPG*PRPCSE
Trigger: CTCGCTGCACGGCCTCGGCCATCCCGGAATGGAAGA...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTTGTCCTCAACACGACTaGGCGCCTGTGGCCCACACG +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCCPQHD*APVAHT
Trigger: CGTGTGGGCCACAGGCGCCCAGTCGTGTTGAGGACA...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTGAGGGCGTCTGGCAATaGAGGTACCCTGCCTTGCCA +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCEGVWQ*RYPALP
Trigger: TGGCAAGGCAGGGTACCTTCATTGCCAGACGCCCTC...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCATCGGTGTCCGGTCCTaGGCCAGTAGATCCGTAAAT +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGIGVRS*ASRSVN
Trigger: ATTTACGGATCTACTGGCGCAGGACCGGACACCGAT...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAAAAGGCGGCCCGAGGCTaGGGCAGGAGAGAGCCGGCT +
Preference number: 4 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEKAARG*GRREPA
Trigger: AGCCGGCTCTCTCCTGCCCCAGCCTCGGGCCGCCTT...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCCAGAAGAGAATGAAATaGTACATACCCCTCCGAAGG +
Preference number: 4 (lower is better)
Translates to: AAPPAADSMSSTRLGACGQKRMK*YIPLRR
Trigger: CCTTCGGAGGGGTATGTACCATTTCATTCTCTTCTG...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCCGCAGGCCTCTGAGCTaGGAAAAGAGAGTGACTACA +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGRRPLS*EKRVTT
Trigger: TGTAGTCACTCTCTTTTCCCAGCTCAGAGGCCTGCG...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTGGGGTGTTTCCGTACTaGCAGAGGTGGAGGAGGGGA +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCGVFPY*QRWRRG
Trigger: TCCCCTCCTCCACCTCTGCCAGTACGGAAACACCCC...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCTTTGTACTTCGAAGTTaGACTGAGCAGAGACAAACG +
Preference number: 4 (lower is better)
Translates to: AAPPAADSMSSTRLGACGFVLRS*TEQRQT
Trigger: CGTTTGTCTCTGCTCAGTTCAACTTCGAAGTACAAA...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCAAAGATCTTTTTAGGTaGCGGAATCCTCACCCAAAC +
Preference number: 4 (lower is better)
Translates to: AAPPAADSMSSTRLGACGKDLFR*RNPHPN
Trigger: GTTTGGGTGAGGATTCCGTCACCTAAAAAGATCTTT...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTAAAATGTGGGTGCTTGTaGCGCCCTCCTCCCCACGTC +
Preference number: 4 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALKCGCL*RPPPHV
Trigger: GACGTGGGGAGGAGGGCGGCACAAGCACCCACATTT...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTCACGCTCTCAGGACCTaGACAGTAAGAGCAAGGCGC +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCHALRT*TVRARR
Trigger: GCGCCTTGCTCTTACTGTGCAGGTCCTGAGAGCGTG...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTGCATCTTCAACTGACTaGACGTCTTCCATTCCGGGA +
Preference number: 4 (lower is better)
Translates to: VTRVGRVALQGKETIVFSASSTD*TSSIPG
Trigger: TCCCGGAATGGAAGACGTCCAGTCAGTTGAAGATGC...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCAAGCTTCGGATTCCTTaGATATTTCTAGGCCACTCT +
Preference number: 4 (lower is better)
Translates to: AAPPAADSMSSTRLGACGKLRIP*IFLGHS
Trigger: AGAGTGGCCTAGAAATATCCAAGGAATCCGAAGCTT...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCAAAATGCAAGGTAATTaGGGGTGTAGGAGTGAAGGT +
Preference number: 4 (lower is better)
Translates to: AAPPAADSMSSTRLGACGKMQGN*GCRSEG
Trigger: ACCTTCACTCCTACACCCCCAATTACCTTGCATTTT...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTATTCCCGTAACAATGTaGGGAAGGGAGGGTAACATG +
Preference number: 4 (lower is better)
Translates to: VTRVGRVALQGKETIVFSIPVTM*GREGNM
Trigger: CATGTTACCCTCCCTTCCTCACATTGTTACGGGAAT...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTGGGAGCCGGGCCCGGTaGGTTAAGATCGCAGGGCTG +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFGSRAR*VKIAGL
Trigger: CAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCC...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTCTTGGGCCCTTTTGGTaGCCTGAGACGAGCTTCCTA +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCLGPFW*PETSFL
Trigger: TAGGAAGCTCGTCTCAGGTCACCAAAAGGGCCCAAG...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTGGATGGCCGAGGCCGTaGAGCGAGAGGCTGTCACCC +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFGWPRP*SERLSP
Trigger: GGGTGACAGCCTCTCGCTGCACGGCCTCGGCCATCC...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCGAAGGTACCCTGCCTTaGCAAGTAAGACAATTCCCA +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGEGTLP*QVRQFP
Trigger: TGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCGCCCCATTACCTACTaGAGAATGGGGCTTTCTCGG +
Preference number: 4 (lower is better)
Translates to: RTGRGGGGEASDSLDISRRPITY*RMGLSR
Trigger: CCGAGAAAGCCCCATTCTCCAGTAGGTAATGGGGCG...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGCCCACTTCTTGCCGCTaGCGTTGCCCCCAGGGATGT +
Preference number: 4 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVPTSCR*RCPQGC
Trigger: ACATCCCTGGGGGCAACGGCAGCGGCAAGAAGTGGG...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCTTGCTGCTTTGCGCCTaGCCGCGGGTAAATTCAAAC +
Preference number: 4 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGLLLCA*PRVNSN
Trigger: GTTTGAATTTACCCGCGGGCAGGCGCAAAGCAGCAA...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTAACTCAGAGACGGCTTTaGCGGGAAACTCCGTTTCGC +
Preference number: 4 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALTQRRL*RETPFR
Trigger: GCGAAACGGAGTTTCCCGCCAAAGCCGTCTCTGAGT...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGGCTCCAGGATGGGGCTaGGTCGGCTGTTCCCTATCG +
Preference number: 4 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVAPGWG*VGCSLS
Trigger: CGATAGGGAACAGCCGACCCAGCCCCATCCTGGAGC...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCCTTCGGTTCTTTAAGTaGGGATGGAGGAAAGCTATG +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGLRFFK*GWRKAM
Trigger: CATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAG...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTCAGGGACCAAATGTCTaGAGAGTGCAGGGGCCGGGG +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFQGPNV*RVQGPG
Trigger: CCCCGGCCCCTGCACTCTTCAGACATTTGGTCCCTG...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCCCAGAGCTCTTCTCGTaGAGAGTCAATAGATTGATA +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGPELFS*RVNRLI
Trigger: TATCAATCTATTGACTCTTCACGAGAAGAGCTCTGG...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAATGCTCCCCAGAGACCTaGAATACGTGCAGGAGGCGG +
Preference number: 4 (lower is better)
Translates to: LFCFGTERLGVGRDQMSECSPET*NTCRRR
Trigger: CCGCCTCCTGCACGTATTGCAGGTCTCTGGGGAGCA...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCGAGAAGTCACCGATTTaGGAGGAACTGGAACTTTTT +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGEKSPI*EELELF
Trigger: AAAAAGTTCCAGTTCCTCCCAAATCGGTGACTTCTC...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTACGGGTGAGGTGAGATaGAGGGCGGGGACTGCGAGA +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFTGEVR*RAGTAR
Trigger: TCTCGCAGTCCCCGCCCTCCATCTCACCTCACCCGT...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCCAAAACCGGGAGTCCTaGAGAATTGAGTGGGTCCTA +
Preference number: 4 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGQNRES*RIEWVL
Trigger: TAGGACCCACTCAATTCTCCAGGACTCCCGGTTTTG...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTATGGGGAAACGCCGTTTaGGCTCTTGAGGCAACATCA +
Preference number: 4 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALWGNAV*ALEATS
Trigger: TGATGTTGCCTCAAGAGCCCAAACGGCGTTTCCCCA...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGTCGATTTGGCTCTTCTaGGGACTCCGCCGAGGAGAG +
Preference number: 4 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVSIWLF*GLRRGE
Trigger: CTCTCCTCGGCGGAGTCCTCAGAAGAGCCAAATCGA...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCATTTTGTTTTGGGACTaGGCGTTTAGGAGTGGGCAG +
Preference number: 4 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGILFWD*AFRSGQ
Trigger: CTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAAT...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTATCACTCGGGTCTGTGTaGTGCCGGTTCAAATACTCA +
Preference number: 4 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALSLGSV*CRFKYS
Trigger: TGAGTATTTGAACCGGCAGCACACAGACCCGAGTGA...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTGAGAACCGATATTGTTaGTCCGTTGTACGCCTCAGT +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCENRYC*SVVRLS
Trigger: ACTGAGGCGTACAACGGAGCAACAATATCGGTTCTC...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTGCCGGCACCAAAAATTaGAGCCTCCGCCTGGTCTCC +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFAGTKN*SLRLVS
Trigger: GGAGACCAGGCGGAGGCTGCAATTTTTGGTGCCGGC...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAACGCCAGAACCTGCTCTaGCGGCCGGCACCAAAAATT +
Preference number: 4 (lower is better)
Translates to: LFCFGTERLGVGRDQMSERQNLL*RPAPKI
Trigger: AATTTTTGGTGCCGGCCGGCAGAGCAGGTTCTGGCG...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTCTGCTTTTGCGGAGGTaGAGACAATGGATTCCAGAT +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCLLLRR*RQWIPD
Trigger: ATCTGGAATCCATTGTCTGCACCTCCGCAAAAGCAG...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCAGAGAGCCGCGAGCTGTaGCTCGGGACACCATCGTGC +
Preference number: 4 (lower is better)
Translates to: KIKKFVRLSQPALKALTPESREL*LGTPSC
Trigger: GCACGATGGTGTCCCGAGCCACAGCTCGCGGCTCTC...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCTCGAAAGAACCGAAGTaGAAAATCCGGACGGTTGTC +
Preference number: 4 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGSKEPK*KIRTVV
Trigger: GACAACCGTCCGGATTTTCCACTTCGGTTCTTTCGA...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTTCCTGGAGAATTGAGTaGGTCCTAACTATAAATCCT +
Preference number: 4 (lower is better)
Translates to: VTRVGRVALQGKETIVFSSWRIE*VLTINP
Trigger: AGGATTTATAGTTAGGACCCACTCAATTCTCCAGGA...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTATTACCTACTGGAGAATaGGGCTTTCTCGGTCGCCTT +
Preference number: 4 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALLPTGE*GFLGRL
Trigger: AAGGCGACCGAGAAAGCCCCATTCTCCAGTAGGTAA...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTGGGTTTGGCAGAGAATaGTCTGGAGATCTTTGGAAC +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCGFGRE*SGDLWN
Trigger: GTTCCAAAGATCTCCAGACCATTCTCTGCCAAACCC...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CAA 72 bp AGGAGACGATCGTTTTCAGTGTGGTCTCTCCTGGCCTaGTGCAATCAGAACACATCTAATGCGATCGGCCGA +
Preference number: 4 (lower is better)
Translates to: RRRSFSVWSLLA*CNQNTSNAIGR
Trigger: TCGGCCGATCGCATTAGATGTGTTCTGATTGCACAAGGCCAGGAGAGACCACACTGAAAACGATCGTCTCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGCGCCGTTTGGGCTCTTaGGGCAACATCAGACGGTTT +
Preference number: 4 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVRRLGS*GNIRRF
Trigger: AAACCGTCTGATGTTGCCTCAAGAGCCCAAACGGCG...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTAATGGAGGGCGGGGACTaGGAGAGTTTCCTAAAAATA +
Preference number: 4 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALMEGGD*ESFLKI
Trigger: TATTTTTAGGAAACTCTCGCAGTCCCCGCCCTCCAT...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAAGCCAGTTTTACTACCTaGGCCTTCCCCAGACGTGTG +
Preference number: 4 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEASFTT*AFPRRV
Trigger: CACACGTCTGGGGAAGGCCCAGGTAGTAAAACTGGC...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCAGGTGGAGTCGATTTTaGCATTTAAAGAAGGATAGT +
Preference number: 4 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGRWSRF*HLKKDS
Trigger: ACTATCCTTCTTTAAATGCCAAAATCGACTCCACCT...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTGGCGACAGCCGTCTCTaGACTTCTCCCACAGTTACT +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFGDSRL*TSPTVT
Trigger: AGTAACTGTGGGAGAAGTTCAGAGACGGCTGTCGCC...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTTCCGCCGAGGAGAGATaGATTGAGGCATTCAGGGGG +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRSAEER*IEAFRG
Trigger: CCCCCTGAATGCCTCAATGCATCTCTCCTCGGCGGA...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTTTAAAGAAGTGCACCTaGAGAATTCTGACACACAGG +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCLKKCT*RILTHR
Trigger: CCTGTGTGTCAGAATTCTGCAGGTGCACTTCTTTAA...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAAGCCCAAGAAAGGAGCTaGGCTGCCAGAAGTGAGAAA +
Preference number: 4 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEAQERS*AARSEK
Trigger: TTTCTCACTTCTGGCAGCCCAGCTCCTTTCTTGGGC...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTTGGCAGAGAATGGTCTaGAGATCTTTGGAACCTTTA +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCWQRMV*RSLEPL
Trigger: TAAAGGTTCCAAAGATCTCCAGACCATTCTCTGCCA...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTAGGAACTGATGATGTTTaGATCAACTTATTGGTCCGG +
Preference number: 4 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALGTDDV*INLLVR
Trigger: CCGGACCAATAAGTTGATTCAAACATCATCAGTTCC...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCAAGCCCCTCCAGCGGCTaGTTCTATGTCCTCAACACG +
Preference number: 4 (lower is better)
Translates to: KIKKFVRLSQPALKALTPSPSSG*FYVLNT
Trigger: CGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCT...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTGCGAAGTGGAAAGTGTaGAGGCAGCACTGCCACATC +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRAKWKV*RQHCHI
Trigger: GATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGC...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTCCTTCCCCAGACGTGTaGCTGTTAGTGGTGGTGTTG +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRPSPDV*LLVVVL
Trigger: CAACACCACCACTAACAGGCACACGTCTGGGGAAGG...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTAGCATGATGGCAGCCTaGTCTCTAGGAGGTGAGTGC +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRSMMAA*SLGGEC
Trigger: GCACTCACCTCCTAGAGACCAGGCTGCCATCATGCT...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCTTTGAATCAACTTATTaGTCCGGATTTTCCTCAGCC +
Preference number: 4 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGFESTY*SGFSSA
Trigger: GGCTGAGGAAAATCCGGACCAATAAGTTGATTCAAA...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCAGGAGGCGGCAGGGTTTaGCAGAGAATGGTCTGGAGA +
Preference number: 4 (lower is better)
Translates to: KIKKFVRLSQPALKALTPGGGRV*QRMVWR
Trigger: TCTCCAGACCATTCTCTGCCAAACCCTGCCGCCTCC...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTCTGGTCTCTAGGAGGTaGGTGCATTCATGTGAGGAG +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRLVSRR*VHSCEE
Trigger: CTCCTCACATGAATGCACTCACCTCCTAGAGACCAG...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTAGGTACCGAGAGGACTaGAACAACGCAAAAGGGCCA +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRRYRED*NNAKGP
Trigger: TGGCCCTTTTGCGTTGTTTCAGTCCTCTCGGTACCT...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTTATACAAACTTAACATaGATACCCTCCAGAGCTCTT +
Preference number: 4 (lower is better)
Translates to: TCEVESVKAALPHPDSSCYTNLT*IPSRAL
Trigger: AAGAGCTCTGGAGGGTATTCATGTTAAGTTTGTATA...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTCTCGGGTCTGTGTGCTaGCGGTTCAAATACTCAGAG +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRLGSVC*RFKYSE
Trigger: CTCTGAGTATTTGAACCGGCAGCACACAGACCCGAG...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCATTACAGAAATGTGGGTaGTTGTGCCGCCCTCCTCCC +
Preference number: 4 (lower is better)
Translates to: KIKKFVRLSQPALKALTPLQKCG*LCRPPP
Trigger: GGGAGGAGGGCGGCACAAGCACCCACATTTCTGTAA...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCAAACGAAGCTAGGGGTTaGAGATGGGCTGCAGTGTGG +
Preference number: 4 (lower is better)
Translates to: KIKKFVRLSQPALKALTPNEARG*RWAAVW
Trigger: CCACACTGCAGCCCATCTCCAACCCCTAGCTTCGTT...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGCTCACCTGTTTGGTTTaGAAACAAAGCTCAAAGGGG +
Preference number: 4 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVLTCLV*KQSSKG
Trigger: CCCCTTTGAGCTTTGTTTTCAAACCAAACAGGTGAG...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCATGTGGCCCTAACAGTTaGTTGGGCCCTTTTGGTGAC +
Preference number: 4 (lower is better)
Translates to: KIKKFVRLSQPALKALTPCGPNS*LGPFGD
Trigger: GTCACCAAAAGGGCCCAAGCAACTGTTAGGGCCACA...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTGAAGGGAGGGTAACATaGAAAAGGGTGGTTGGGAGA +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFREGRVT*KRVVGR
Trigger: TCTCCCAACCACCCTTTTCCATGTTACCCTCCCTTC...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTAGATGCTGGCAAGGCTaGGAGCTAGTAACATTTCTG +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFRCWQG*ELVTFL
Trigger: CAGAAATGTTACTAGCTCCCAGCCTTGCCAGCATCT...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCCTGCTTCCATCATATTaGCCACTTTCTAAATTATTC +
Preference number: 4 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGLLPSY*PLSKLF
Trigger: GAATAATTTAGAAAGTGGCCAATATGATGGAAGCAG...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAAGTAACGTCTAGCTCTTaGCCATTGCATTCCTCTCAA +
Preference number: 4 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEVTSSS*PLHSSQ
Trigger: TTGAGAGGAATGCAATGGCCAAGAGCTAGACGTTAC...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTATACATCGTCAAAGGTaGGGAAACGCCGTTTGGGCT +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRIHRQR*GNAVWA
Trigger: AGCCCAAACGGCGTTTCCCCACCTTTGACGATGTAT...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCATCTAGGGCTGGGCCATaGAGATCAGAAGTGCTAAAC +
Preference number: 4 (lower is better)
Translates to: KIKKFVRLSQPALKALTPSRAGP*RSEVLN
Trigger: GTTTAGCACTTCTGATCTTCATGGCCCAGCCCTAGA...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTATTTCTCACTGCTTTTaGGGAGGTGCAGACAATGGA +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFISHCF*GGADNG
Trigger: TCCATTGTCTGCACCTCCGCAAAAGCAGTGAGAAAT...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTGGGATAATTTCTCACTaGTTTTGCGGAGGTGCAGAC +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRGIISH*FCGGAD
Trigger: GTCTGCACCTCCGCAAAAGCAGTGAGAAATTATCCC...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTAATCTTTAAGGGGTATTaGAAAGATCTCGTCTACTTT +
Preference number: 4 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALIFKGY*KDLVYF
Trigger: AAAGTAGACGAGATCTTTGCAATACCCCTTAAAGAT...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTAAACAAGTGCACGTCTaGGAGGGAAAAATGCCTCAT +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFKQVHV*EGKMPH
Trigger: ATGAGGCATTTTTCCCTCCCAGACGTGCACTTGTTT...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTAAGGTTCTATCTCGCTaGAGCAAGGAGGAACACACA +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRKVLSR*SKEEHT
Trigger: TGTGTGTTCCTCCTTGCTCCAGCGAGATAGAACCTT...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTTTCTTTAAGTGGGGATaGAGGAAAGCTATGGGTGTG +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFFFKWG*RKAMGV
Trigger: CACACCCATAGCTTTCCTCCATCCCCACTTAAAGAA...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
3UTR CAA 72 bp GTACCTTATAGATTGTGTAGGAAGCCCAAGTCCTCTTaGAAGAAGCTCATAAACCATGCGGGCAAAGCTTTG +
Preference number: 4 (lower is better)
Translates to: VPYRLCRKPKSS*KKLINHAGKAL
Trigger: CAAAGCTTTGCCCGCATGGTTTATGAGCTTCTTCAAAGAGGACTTGGGCTTCCTACACAATCTATAAGGTAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTTCTCTCCTGGCCTTGTaGAATCAGAACACATCTAAT +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFSLLAL*NQNTSN
Trigger: ATTAGATGTGTTCTGATTGCACAAGGCCAGGAGAGA...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAATACAAAGTTGCTTGGTaGCCAACAGCATATTCTTTC +
Preference number: 4 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEYKVAW*PTAYSF
Trigger: GAAAGAATATGCTGTTGGCCACCAAGCAACTTTGTA...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTAGATATCTTCGTACTTaGCATTCTCCACAAGCTTCC +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRRYLRT*HSPQAS
Trigger: GGAAGCTTGTGGAGAATGTCAAGTACGAAGATATCT...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTCTGACACACAGGCTTTaGTTAAAAAGGGATCGGATT +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRLTHRL*LKRDRI
Trigger: AATCCGATCCCTTTTTAATCAAAGCCTGTGTGTCAG...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAACTTAAACGTCTCCCTTaGCTTAAAAGGCAAACTATT +
Preference number: 4 (lower is better)
Translates to: LFCFGTERLGVGRDQMSELKRLP*LKRQTI
Trigger: AATAGTTTGCCTTTTAAGTCAAGGGAGACGTTTAAG...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR TCA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAATATGAAATAATTGCTTaGGAGAAAGTGGCTTCCTTG +
Preference number: 4 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEYEIIA*EKVASL
Trigger: CAAGGAAGCCACTTTCTCTCAAGCAATTATTTCATA...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCATCATGCCGCTGTTATTaGCATCTTCAACTGACTGGA +
Preference number: 4 (lower is better)
Translates to: KIKKFVRLSQPALKALTPSCRCY*HLQLTG
Trigger: TCCAGTCAGTTGAAGATGCCAATAACAGCGGCATGA...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTTTTTTAATGACAGACTaGTCCAATAGATTCATGCCG +
Preference number: 4 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFFLMTD*SNRFMP
Trigger: CGGCATGAATCTATTGGACCAGTCTGTCATTAAAAA...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
41% GC, longest homopolymer 8 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CCA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCACGGAGGTGCAGACAATaGATTCCAGATCTTATTTCA +
Preference number: 4 (lower is better)
Translates to: KIKKFVRLSQPALKALTPRRCRQ*IPDLIS
Trigger: TGAAATAAGATCTGGAATCCATTGTCTGCACCTCCG...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR GCA 90 bp CAGTGTGTAGATAAGCTCGAGGTTTCGAGTTTTCCATTCGACCAAAGTTTTCGTCCTAACTATAAATCCTaGAGAACAACATCTATGTCG +
Preference number: 4 (lower is better)
Translates to: QCVDKLEVSSFPFDQSFRPNYKS*RTTSMS
Trigger: CGACATAGATGTTGTTCTGCAGGATTTATAGTTAGG...ACGAAAACTTTGGTCGAATGGAAAACTCGAAACCTCGAGCTTATCTACACACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS CCA 90 bp AGGCCGTGCAGCGAGAGGCTGTCACCCATGCCCGCGTCCAGGCCGTaGTGCGCCGAATGCAGCAGCACGTCCGGCCGGCGGACCGAGTGG +
Preference number: 5 (lower is better)
Translates to: RPCSERLSPMPASRP*CAECSSTSGRRTEW
Trigger: CCACTCGGTCCGCCGGCCGGACGTGCTGCTGCATTCGGCGCACCACGGCCTGGACGCGGGCATGGGTGACAGCCTCTCGCTGCACGGCCT
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000344788.7
ENST00000393655.4
ENST00000489228.1
CDS GCA 90 bp CCATTCCGGGATGGCCGAGGCCGTGCAGCGAGAGGCTGTCACCCATaGCCGCGTCCAGGCCGTGGTGCGCCGAATGCAGCAGCACGTCCG +
Preference number: 5 (lower is better)
Translates to: PFRDGRGRAARGCHP*PRPGRGAPNAAARP
Trigger: CGGACGTGCTGCTGCATTCGGCGCACCACGGCCTGGACGCGGGCATGGGTGACAGCCTCTCGCTGCACGGCCTCGGCCATCCCGGAATGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000344788.7
ENST00000393655.4
ENST00000489228.1
CDS-3UTR CAA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGACGCCGTTTGGGCTCTaGAGGCAACATCAGACGGTT +
Preference number: 5 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRTPFGL*RQHQTV
Trigger: AACCGTCTGATGTTGCCTCAAGAGCCCAAACGGCGT...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 90 bp TCTTCAACTGACTGGACGTCTTCCATTCCGGGATGGCCGAGGCCGTaGAGCGAGAGGCTGTCACCCATGCCCGCGTCCAGGCCGTGGTGC +
Preference number: 5 (lower is better)
Translates to: SSTDWTSSIPGWPRP*SERLSPMPASRPWC
Trigger: GCACCACGGCCTGGACGCGGGCATGGGTGACAGCCTCTCGCTGCACGGCCTCGGCCATCCCGGAATGGAAGACGTCCAGTCAGTTGAAGA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000344788.7
ENST00000393655.4
CDS GCA 90 bp GGGGCTCCAGATGCAGTCCTCTTTCACCCGAAGCTGGGCTCAGACTaGTCGGCCGCCCCTTCCTCCCTCCGCTTGCCTACACCGCCTCAT +
Preference number: 5 (lower is better)
Translates to: GAPDAVLFHPKLGSD*SAAPSSLRLPTPPH
Trigger: ATGAGGCGGTGTAGGCAAGCGGAGGGAGGAAGGGGCGGCCGAGCAGTCTGAGCCCAGCTTCGGGTGAAAGAGGACTGCATCTGGAGCCCC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000489228.1
CDS-3UTR CAA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGTGGTCTCTCCTGGCCTaGTGCAATCAGAACACATCT +
Preference number: 5 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRWSLLA*CNQNTS
Trigger: AGATGTGTTCTGATTGCACAAGGCCAGGAGAGACCA...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCCACGCGTGGGGCGCGTaGCCCTGCAAGGAAAGGAGA +
Preference number: 5 (lower is better)
Translates to: AAPPAADSMSSTRLGACGHAWGA*PCKERR
Trigger: TCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTG...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGTTGTTCAAGAACATCTaGTCCATGCCTTTGAGCGCC +
Preference number: 5 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRLFKNI*SMPLSA
Trigger: GGCGCTCAAAGGCATGGACAAGATGTTCTTGAACAA...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGTCTAGCTCTTGGCCATaGCATTCCTCTCAACAGTTC +
Preference number: 5 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRSSSWP*HSSQQF
Trigger: GAACTGTTGAGAGGAATGCAATGGCCAAGAGCTAGA...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp AGCGGCCGGGGAGCCGGGCCCGGTGAGTTAAGATCGCAGGGCTGGGCGGGGAGGTCTCCCACAGTTACTTaGTACTTCGAAGTTGAACTG +
Preference number: 5 (lower is better)
Translates to: SGRGAGPGELRSQGWAGRSPTVT*YFEVEL
Trigger: CAGTTCAACTTCGAAGTACAAAGTAACTGTGGGAGA...CCTCCCCGCCCAGCCCTGCGATCTTAACTCACCGGGCCCGGCTCCCCGGCCGCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCGGCCCTAACAGTTGCTaGGGCCCTTTTGGTGACCTG +
Preference number: 5 (lower is better)
Translates to: AAPPAADSMSSTRLGACGGPNSC*GPFGDL
Trigger: CAGGTCACCAAAAGGGCCCAAGCAACTGTTAGGGCC...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GTCACACGCGTGGGGCGCGTTGCCCTGCAAGGAAAGGAGACGATCGTTTTCAGTTTCCGAACCCACTTCTaGCCGCTGCCGTTGCCCCCA +
Preference number: 5 (lower is better)
Translates to: VTRVGRVALQGKETIVFSFRTHF*PLPLPP
Trigger: TGGGGGCAACGGCAGCGGCAAGAAGTGGGTTCGGAA...ACTGAAAACGATCGTCTCCTTTCCTTGCAGGGCAACGCGCCCCACGCGTGTGAC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCTTGCCCCCAGGGATGTaGCTGGGGCTGGTGCAGTGG +
Preference number: 5 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGLPPGM*LGLVQW
Trigger: CCACTGCACCAGCCCCAGCAACATCCCTGGGGGCAA...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCTTCTTGCCGCTGCCGTaGCCCCCAGGGATGTTGCTG +
Preference number: 5 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGFLPLP*PPGMLL
Trigger: CAGCAACATCCCTGGGGGCAACGGCAGCGGCAAGAA...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCCAGAAATGTGGGTGCTaGTGCCGCCCTCCTCCCCAC +
Preference number: 5 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGQKCGC*CRPPPH
Trigger: GTGGGGAGGAGGGCGGCACAAGCACCCACATTTCTG...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GCAGCCCCTCCAGCGGCTGATTCTATGTCCTCAACACGACTGGGCGCCTGTGGCGAAGCTTCGGATTCCTaGGATATTTCTAGGCCACTC +
Preference number: 5 (lower is better)
Translates to: AAPPAADSMSSTRLGACGEASDS*DISRPL
Trigger: GAGTGGCCTAGAAATATCCAAGGAATCCGAAGCTTC...GCCACAGGCGCCCAGTCGTGTTGAGGACATAGAATCAGCCGCTGGAGGGGCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCAACACCTCGCCGGTGTaGACAGACATGCCTCCCAGG +
Preference number: 5 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGNTSPV*TDMPPR
Trigger: CCTGGGAGGCATGTCTGTCAACACCGGCGAGGTGTT...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCCCGAGGAGAGATGCATaGAGGCATTCAGGGGGCGAC +
Preference number: 5 (lower is better)
Translates to: VLAEVEEGKLRIPWIFLGPRRDA*RHSGGD
Trigger: GTCGCCCCCTGAATGCCTCAATGCATCTCTCCTCGG...GCCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTAC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGAGGAGGCGGCAGGGTTaGGCAGAGAATGGTCTGGAG +
Preference number: 5 (lower is better)
Translates to: RTGRGGGGEASDSLDISRRRRQG*AENGLE
Trigger: CTCCAGACCATTCTCTGCCAAACCCTGCCGCCTCCT...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 90 bp CCCATTTTTCGATTTGGCTCTTCTGAGGACTCCGCCGAGGAGAGATaGATTGAGGCATTCAGGGGGCGACAGCCGTCTCTGAACTTCTCC +
Preference number: 5 (lower is better)
Translates to: PIFRFGSSEDSAEER*IEAFRGRQPSLNFS
Trigger: GGAGAAGTTCAGAGACGGCTGTCGCCCCCTGAATGCCTCAATGCATCTCTCCTCGGCGGAGTCCTCAGAAGAGCCAAATCGAAAAATGGG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 90 bp GCCAACAGCATATTCTTTCGGGAGTGCAGGTCACTCGGGTCTGTGTaGTGCCGGTTCAAATACTCAGAGACGGCTTTGGCGGGAAACTCC +
Preference number: 5 (lower is better)
Translates to: ANSIFFRECRSLGSV*CRFKYSETALAGNS
Trigger: GGAGTTTCCCGCCAAAGCCGTCTCTGAGTATTTGAACCGGCAGCACACAGACCCGAGTGACCTGCACTCCCGAAAGAATATGCTGTTGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGGTGACATTTGCTGCTTaGCGCCTGCCCGCGGGTAAA +
Preference number: 5 (lower is better)
Translates to: RTGRGGGGEASDSLDISRVTFAA*RLPAGK
Trigger: TTTACCCGCGGGCAGGCGCAAAGCAGCAAATGTCAC...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS TCA 90 bp CTCCACAAGCTTCCAGAGCATGATGGCAGCCTGGTCTCTAGGAGGTaGGTGCATTCATGTGAGGAGCAGATGTCTGGCTTCTCAGGACTC +
Preference number: 5 (lower is better)
Translates to: LHKLPEHDGSLVSRR*VHSCEEQMSGFSGL
Trigger: GAGTCCTGAGAAGCCAGACATCTGCTCCTCACATGAATGCACTCACCTCCTAGAGACCAGGCTGCCATCATGCTCTGGAAGCTTGTGGAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344788.7
CDS GCA 90 bp ACAAGCTTCCAGAGCATGATGGCAGCCTGGTCTCTAGGAGGTGAGTaGATTCATGTGAGGAGCAGATGTCTGGCTTCTCAGGACTCCGCT +
Preference number: 5 (lower is better)
Translates to: TSFQSMMAAWSLGGE*IHVRSRCLASQDSA
Trigger: AGCGGAGTCCTGAGAAGCCAGACATCTGCTCCTCACATGAATGCACTCACCTCCTAGAGACCAGGCTGCCATCATGCTCTGGAAGCTTGT
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344788.7
CDS-3UTR CAA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCCTGTGTTTCTCCTCCTaGTCGCCAGTTTTACTACCT +
Preference number: 5 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGLCFSS*SPVLLP
Trigger: AGGTAGTAAAACTGGCGACAAGGAGGAGAAACACAG...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp ACGAAGCTAGGGGTTGGAGATGGGCTGCAGTGTGGCCCTAACAGTTGCTTGGGCAATTTCTCACTGCTTTaGCGGAGGTGCAGACAATGG +
Preference number: 5 (lower is better)
Translates to: TKLGVGDGLQCGPNSCLGNFSLL*RRCRQW
Trigger: CCATTGTCTGCACCTCCGCAAAAGCAGTGAGAAATT...GCCCAAGCAACTGTTAGGGCCACACTGCAGCCCATCTCCAACCCCTAGCTTCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 90 bp AACAGCATATTCTTTCGGGAGTGCAGGTCACTCGGGTCTGTGTGCTaGCGGTTCAAATACTCAGAGACGGCTTTGGCGGGAAACTCCGTT +
Preference number: 5 (lower is better)
Translates to: NSIFFRECRSLGSVC*RFKYSETALAGNSV
Trigger: AACGGAGTTTCCCGCCAAAGCCGTCTCTGAGTATTTGAACCGGCAGCACACAGACCCGAGTGACCTGCACTCCCGAAAGAATATGCTGTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 90 bp TCCTCCTTGTCGCCAGTTTTACTACCTGGGCCTTCCCCAGACGTGTaGCTGTTAGTGGTGGTGTTGTTCAAGAACATCTTGTCCATGCCT +
Preference number: 5 (lower is better)
Translates to: SSLSPVLLPGPSPDV*LLVVVLFKNILSMP
Trigger: AGGCATGGACAAGATGTTCTTGAACAACACCACCACTAACAGGCACACGTCTGGGGAAGGCCCAGGTAGTAAAACTGGCGACAAGGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS CCA 90 bp TCGTACTTGACATTCTCCACAAGCTTCCAGAGCATGATGGCAGCCTaGTCTCTAGGAGGTGAGTGCATTCATGTGAGGAGCAGATGTCTG +
Preference number: 5 (lower is better)
Translates to: SYLTFSTSFQSMMAA*SLGGECIHVRSRCL
Trigger: CAGACATCTGCTCCTCACATGAATGCACTCACCTCCTAGAGACCAGGCTGCCATCATGCTCTGGAAGCTTGTGGAGAATGTCAAGTACGA
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344788.7
CDS-3UTR CAA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCAGCTCGAGTAGGGTCCTaGGGACACCGAGCCCAGCTG +
Preference number: 5 (lower is better)
Translates to: KIKKFVRLSQPALKALTPARVGS*GHRAQL
Trigger: CAGCTGGGCTCGGTGTCCCAAGGACCCTACTCGAGC...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp ACTTGCGAAGTGGAAAGTGTGAAGGCAGCACTGCCACATCCTGACTCCTCCTGTTTCATGCCGCTGTTATaGGCATCTTCAACTGACTGG +
Preference number: 5 (lower is better)
Translates to: TCEVESVKAALPHPDSSCFMPLL*ASSTDW
Trigger: CCAGTCAGTTGAAGATGCCAATAACAGCGGCATGAA...ACAGGAGGAGTCAGGATGTGGCAGTGCTGCCTTCACACTTTCCACTTCGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGGAGAAAGTGGCTTCCTaGGCCAAGGAAAACAAAGCA +
Preference number: 5 (lower is better)
Translates to: RTGRGGGGEASDSLDISREKVAS*AKENKA
Trigger: TGCTTTGTTTTCCTTGGCCAAGGAAGCCACTTTCTC...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 90 bp TCTTTACAAAGTTGCTTGGTGGCCAACAGCATATTCTTTCGGGAGTaGAGGTCACTCGGGTCTGTGTGCTGCCGGTTCAAATACTCAGAG +
Preference number: 5 (lower is better)
Translates to: SLQSCLVANSIFFRE*RSLGSVCCRFKYSE
Trigger: CTCTGAGTATTTGAACCGGCAGCACACAGACCCGAGTGACCTGCACTCCCGAAAGAATATGCTGTTGGCCACCAAGCAACTTTGTAAAGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAATACTCAGAGACGGCTTaGGCGGGAAACTCCGTTTCG +
Preference number: 5 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEYSETA*AGNSVS
Trigger: CGAAACGGAGTTTCCCGCCAAAGCCGTCTCTGAGTA...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAACCCCCATTTTTCGATTaGGCTCTTCTGAGGACTCCG +
Preference number: 5 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEPPFFD*ALLRTP
Trigger: CGGAGTCCTCAGAAGAGCCAAATCGAAAAATGGGGG...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GAAGGTACCCTGCCTTGCCAAGTAAGACAATTCCCATCCCATCTCCCCGCTTTACTGTTAGTGGTGGTGTaGTTCAAGAACATCTTGTCC +
Preference number: 5 (lower is better)
Translates to: EGTLPCQVRQFPSHLPALLLVVV*FKNILS
Trigger: GGACAAGATGTTCTTGAACAACACCACCACTAACAG...TAAAGCGGGGAGATGGGATGGGAATTGTCTTACTTGGCAAGGCAGGGTACCTTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGAAGCCCAAGTCCTCTTaGAAGAAGCTCATAAACCAT +
Preference number: 5 (lower is better)
Translates to: RTGRGGGGEASDSLDISRKPKSS*KKLINH
Trigger: ATGGTTTATGAGCTTCTTCAAAGAGGACTTGGGCTT...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp CGTACTGGCAGAGGTGGAGGAGGGGAAGCTTCGGATTCCTTGGATATTTCTAGGCTTGTAAGAAAGCAATaGTTACAGAAATGTGGGTGC +
Preference number: 5 (lower is better)
Translates to: RTGRGGGGEASDSLDISRLVRKQ*LQKCGC
Trigger: GCACCCACATTTCTGTAACAATTGCTTTCTTACAAG...CCTAGAAATATCCAAGGAATCCGAAGCTTCCCCTCCTCCACCTCTGCCAGTACG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTCCAGCTCTCAAAGCATaGACACCAACGTTTCTCCGA +
Preference number: 5 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFPALKA*TPTFLR
Trigger: TCGGAGAAACGTTGGTGTCAATGCTTTGAGAGCTGG...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAAAGAGAAGTCACCGATTaGGGAGGAACTGGAACTTTT +
Preference number: 5 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEREVTD*GGTGTF
Trigger: AAAAGTTCCAGTTCCTCCCAAATCGGTGACTTCTCT...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGTCTTTACAAAGTTGCTaGGTGGCCAACAGCATATTC +
Preference number: 5 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVSLQSC*VANSIF
Trigger: GAATATGCTGTTGGCCACCAAGCAACTTTGTAAAGA...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp AATGTGAGATTCTCTCTATGCAGATGCTGGCAAGGCTGGGAGCTAGTAACATTTTCTGACACACAGGCTTaGATTAAAAAGGGATCGGAT +
Preference number: 5 (lower is better)
Translates to: NVRFSLCRCWQGWELVTFSDTQA*IKKGSD
Trigger: ATCCGATCCCTTTTTAATCAAAGCCTGTGTGTCAGA...AAATGTTACTAGCTCCCAGCCTTGCCAGCATCTGCATAGAGAGAATCTCACATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCATCTGTACCTTATAGATaGTGTAGGAAGCCCAAGTCC +
Preference number: 5 (lower is better)
Translates to: KIKKFVRLSQPALKALTPSVPYR*CRKPKS
Trigger: GGACTTGGGCTTCCTACACAATCTATAAGGTACAGA...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp CTATTTTGTTTTGGGACTGAGCGTTTAGGAGTGGGCAGGGACCAAATGTCTGAAATGGTCTGGAGATCTTaGGAACCTTTAAAAGAACTT +
Preference number: 5 (lower is better)
Translates to: LFCFGTERLGVGRDQMSEMVWRS*EPLKEL
Trigger: AAGTTCTTTTAAAGGTTCCAAAGATCTCCAGACCAT...TTCAGACATTTGGTCCCTGCCCACTCCTAAACGCTCAGTCCCAAAACAAAATAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp AAAATTAAAAAGTTCGTGCGTCTCAGTCAACCAGCTCTCAAAGCATTGACACCAAGTTACCTTCCCACTTaGGGGGAGAAGTTAAAGATC +
Preference number: 5 (lower is better)
Translates to: KIKKFVRLSQPALKALTPSYLPT*GEKLKI
Trigger: GATCTTTAACTTCTCCCCCAAAGTGGGAAGGTAACT...TGGTGTCAATGCTTTGAGAGCTGGTTGACTGAGACGCACGAACTTTTTAATTTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS-3UTR CAA 90 bp GTCTTTAAAAGCCTCTTCGGTTCTTTAAGTGGGGATGGAGGAAAGCTATGGGTGATAATCCCAAACTACTaGCTCGCCATATTTACACAT +
Preference number: 5 (lower is better)
Translates to: VFKSLFGSLSGDGGKLWVIIPNY*LAIFTH
Trigger: ATGTGTAAATATGGCGAGCAAGTAGTTTGGGATTAT...CACCCATAGCTTTCCTCCATCCCCACTTAAAGAACCGAAGAGGCTTTTAAAGAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 72 bp GAGAGGCTGTCACCCATGCCCGCGTCCAGGCCGTGGTaGGCCGAATGCAGCAGCACGTCCGGCCGGCGGACC +
Preference number: 6 (lower is better)
Translates to: ERLSPMPASRPW*AECSSTSGRRT
Trigger: GGTCCGCCGGCCGGACGTGCTGCTGCATTCGGCGCACCACGGCCTGGACGCGGGCATGGGTGACAGCCTCTC
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000344788.7
ENST00000393655.4
ENST00000489228.1
CDS CCA 72 bp AGCGAGAGGCTGTCACCCATGCCCGCGTCCAGGCCGTaGTGCGCCGAATGCAGCAGCACGTCCGGCCGGCGG +
Preference number: 6 (lower is better)
Translates to: SERLSPMPASRP*CAECSSTSGRR
Trigger: CCGCCGGCCGGACGTGCTGCTGCATTCGGCGCACCACGGCCTGGACGCGGGCATGGGTGACAGCCTCTCGCT
74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000344788.7
ENST00000393655.4
ENST00000489228.1
CDS GCA 72 bp GATGGCCGAGGCCGTGCAGCGAGAGGCTGTCACCCATaGCCGCGTCCAGGCCGTGGTGCGCCGAATGCAGCA +
Preference number: 6 (lower is better)
Translates to: DGRGRAARGCHP*PRPGRGAPNAA
Trigger: TGCTGCATTCGGCGCACCACGGCCTGGACGCGGGCATGGGTGACAGCCTCTCGCTGCACGGCCTCGGCCATC
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENST00000344788.7
ENST00000393655.4
ENST00000489228.1
CDS GCA 72 bp GAGCCGGCTTCCGAACCCACTTCTTGCCGCTGCCGTTaGCCCCAGGGATGTTGCTGGGGCTGGTGCAGTGGG +
Preference number: 6 (lower is better)
Translates to: EPASEPTSCRCR*PQGCCWGWCSG
Trigger: CCCACTGCACCAGCCCCAGCAACATCCCTGGGGGCAACGGCAGCGGCAAGAAGTGGGTTCGGAAGCCGGCTC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENST00000344788.7
ENST00000393655.4
ENST00000489228.1
CDS GCA 72 bp GACTGGACGTCTTCCATTCCGGGATGGCCGAGGCCGTaGAGCGAGAGGCTGTCACCCATGCCCGCGTCCAGG +
Preference number: 6 (lower is better)
Translates to: DWTSSIPGWPRP*SERLSPMPASR
Trigger: CCTGGACGCGGGCATGGGTGACAGCCTCTCGCTGCACGGCCTCGGCCATCCCGGAATGGAAGACGTCCAGTC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000344788.7
ENST00000393655.4
CDS CAA 72 bp AGAGCCGGCTTCCGAACCCACTTCTTGCCGCTGCCGTaGCCCCCAGGGATGTTGCTGGGGCTGGTGCAGTGG +
Preference number: 6 (lower is better)
Translates to: RAGFRTHFLPLP*PPGMLLGLVQW
Trigger: CCACTGCACCAGCCCCAGCAACATCCCTGGGGGCAACGGCAGCGGCAAGAAGTGGGTTCGGAAGCCGGCTCT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENST00000344788.7
ENST00000393655.4
ENST00000489228.1
CDS GCA 72 bp GATGCAGTCCTCTTTCACCCGAAGCTGGGCTCAGACTaGTCGGCCGCCCCTTCCTCCCTCCGCTTGCCTACA +
Preference number: 6 (lower is better)
Translates to: DAVLFHPKLGSD*SAAPSSLRLPT
Trigger: TGTAGGCAAGCGGAGGGAGGAAGGGGCGGCCGAGCAGTCTGAGCCCAGCTTCGGGTGAAAGAGGACTGCATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000489228.1
CDS CCA 72 bp GCATCTTCAACTGACTGGACGTCTTCCATTCCGGGATaGCCGAGGCCGTGCAGCGAGAGGCTGTCACCCATG +
Preference number: 6 (lower is better)
Translates to: ASSTDWTSSIPG*PRPCSERLSPM
Trigger: CATGGGTGACAGCCTCTCGCTGCACGGCCTCGGCCATCCCGGAATGGAAGACGTCCAGTCAGTTGAAGATGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000344788.7
ENST00000393655.4
CDS GCA 72 bp CGATTTGGCTCTTCTGAGGACTCCGCCGAGGAGAGATaGATTGAGGCATTCAGGGGGCGACAGCCGTCTCTG +
Preference number: 6 (lower is better)
Translates to: RFGSSEDSAEER*IEAFRGRQPSL
Trigger: CAGAGACGGCTGTCGCCCCCTGAATGCCTCAATGCATCTCTCCTCGGCGGAGTCCTCAGAAGAGCCAAATCG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 72 bp GGCCTCTTTTCTTCTGCCGTTCTTCGGGGCTCCAGATaGAGTCCTCTTTCACCCGAAGCTGGGCTCAGACTG +
Preference number: 6 (lower is better)
Translates to: GLFSSAVLRGSR*SPLSPEAGLRL
Trigger: CAGTCTGAGCCCAGCTTCGGGTGAAAGAGGACTGCATCTGGAGCCCCGAAGAACGGCAGAAGAAAAGAGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENST00000489228.1
CDS TCA 72 bp AACGGCCTGGGACGGAGCAAAACACCTCGCCGGTGTTaGCAGACATGCCTCCCAGGAAGCCGTCTTTATTCA +
Preference number: 6 (lower is better)
Translates to: NGLGRSKTPRRC*QTCLPGSRLYS
Trigger: TGAATAAAGACGGCTTCCTGGGAGGCATGTCTGTCAACACCGGCGAGGTGTTTTGCTCCGTCCCAGGCCGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 72 bp TTCTTTCGGGAGTGCAGGTCACTCGGGTCTGTGTGCTaGCGGTTCAAATACTCAGAGACGGCTTTGGCGGGA +
Preference number: 6 (lower is better)
Translates to: FFRECRSLGSVC*RFKYSETALAG
Trigger: TCCCGCCAAAGCCGTCTCTGAGTATTTGAACCGGCAGCACACAGACCCGAGTGACCTGCACTCCCGAAAGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS CAA 72 bp AAACGGCCTGGGACGGAGCAAAACACCTCGCCGGTGTaGACAGACATGCCTCCCAGGAAGCCGTCTTTATTC +
Preference number: 6 (lower is better)
Translates to: KRPGTEQNTSPV*TDMPPRKPSLF
Trigger: GAATAAAGACGGCTTCCTGGGAGGCATGTCTGTCAACACCGGCGAGGTGTTTTGCTCCGTCCCAGGCCGTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS CAA 72 bp GGGCCTTCCCCAGACGTGTGCCTGTTAGTGGTGGTGTaGTTCAAGAACATCTTGTCCATGCCTTTGAGCGCC +
Preference number: 6 (lower is better)
Translates to: GPSPDVCLLVVV*FKNILSMPLSA
Trigger: GGCGCTCAAAGGCATGGACAAGATGTTCTTGAACAACACCACCACTAACAGGCACACGTCTGGGGAAGGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS TCA 72 bp CTTCCAGAGCATGATGGCAGCCTGGTCTCTAGGAGGTaGGTGCATTCATGTGAGGAGCAGATGTCTGGCTTC +
Preference number: 6 (lower is better)
Translates to: LPEHDGSLVSRR*VHSCEEQMSGF
Trigger: GAAGCCAGACATCTGCTCCTCACATGAATGCACTCACCTCCTAGAGACCAGGCTGCCATCATGCTCTGGAAG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344788.7
CDS GCA 72 bp ATATTCTTTCGGGAGTGCAGGTCACTCGGGTCTGTGTaGTGCCGGTTCAAATACTCAGAGACGGCTTTGGCG +
Preference number: 6 (lower is better)
Translates to: IFFRECRSLGSV*CRFKYSETALA
Trigger: CGCCAAAGCCGTCTCTGAGTATTTGAACCGGCAGCACACAGACCCGAGTGACCTGCACTCCCGAAAGAATAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS GCA 72 bp AGTTGCTTGGTGGCCAACAGCATATTCTTTCGGGAGTaGAGGTCACTCGGGTCTGTGTGCTGCCGGTTCAAA +
Preference number: 6 (lower is better)
Translates to: SCLVANSIFFRE*RSLGSVCCRFK
Trigger: TTTGAACCGGCAGCACACAGACCCGAGTGACCTGCACTCCCGAAAGAATATGCTGTTGGCCACCAAGCAACT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS CCA 72 bp ACATTCTCCACAAGCTTCCAGAGCATGATGGCAGCCTaGTCTCTAGGAGGTGAGTGCATTCATGTGAGGAGC +
Preference number: 6 (lower is better)
Translates to: TFSTSFQSMMAA*SLGGECIHVRS
Trigger: GCTCCTCACATGAATGCACTCACCTCCTAGAGACCAGGCTGCCATCATGCTCTGGAAGCTTGTGGAGAATGT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000344788.7
ENST00000393655.4
CDS CAA 90 bp TCACTCGGGTCTGTGTGCTGCCGGTTCAAATACTCAGAGACGGCTTaGGCGGGAAACTCCGTTTCGCAAATGTACCCAAAATCCCTAGCT +
Preference number: 6 (lower is better)
Translates to: SLGSVCCRFKYSETA*AGNSVSQMYPKSLA
Trigger: AGCTAGGGATTTTGGGTACATTTGCGAAACGGAGTTTCCCGCCAAAGCCGTCTCTGAGTATTTGAACCGGCAGCACACAGACCCGAGTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS CAA 72 bp TCCACCAGGGAGGTGAGTAACGTGACATTTGCTGCTTaGCGCCTGCCCGCGGGTAAATTCAAACCGATTTTT +
Preference number: 6 (lower is better)
Translates to: STREVSNVTFAA*RLPAGKFKPIF
Trigger: AAAAATCGGTTTGAATTTACCCGCGGGCAGGCGCAAAGCAGCAAATGTCACGTTACTCACCTCCCTGGTGGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS CCA 72 bp CTGTGTGCTGCCGGTTCAAATACTCAGAGACGGCTTTaGCGGGAAACTCCGTTTCGCAAATGTACCCAAAAT +
Preference number: 6 (lower is better)
Translates to: LCAAGSNTQRRL*RETPFRKCTQN
Trigger: ATTTTGGGTACATTTGCGAAACGGAGTTTCCCGCCAAAGCCGTCTCTGAGTATTTGAACCGGCAGCACACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS CAA 72 bp TCTGTGTGCTGCCGGTTCAAATACTCAGAGACGGCTTaGGCGGGAAACTCCGTTTCGCAAATGTACCCAAAA +
Preference number: 6 (lower is better)
Translates to: SVCCRFKYSETA*AGNSVSQMYPK
Trigger: TTTTGGGTACATTTGCGAAACGGAGTTTCCCGCCAAAGCCGTCTCTGAGTATTTGAACCGGCAGCACACAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000393655.4
CDS CAA 72 bp AATCCGACGCTCCTCTCCCATCGCAACTTATATCTGTaGTCTCAAACAATAGGCTGGACAAGTAAGCCTCAG +
Preference number: 6 (lower is better)
Translates to: NPTLLSHRNLYL*SQTIGWTSKPQ
Trigger: CTGAGGCTTACTTGTCCAGCCTATTGTTTGAGACAACAGATATAAGTTGCGATGGGAGAGGAGCGTCGGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344788.7
CDS CAA 72 bp ATGACAGACTGGTCCAATAGATTCATGCCGCTGTTATaGGCATCTTCAACTGACTGGACGTCTTCCATTCCG +
Preference number: 6 (lower is better)
Translates to: MTDWSNRFMPLL*ASSTDWTSSIP
Trigger: CGGAATGGAAGACGTCCAGTCAGTTGAAGATGCCAATAACAGCGGCATGAATCTATTGGACCAGTCTGTCAT
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENST00000344788.7
ENST00000393655.4
CDS CAA 90 bp TACACACCAAATCCGACGCTCCTCTCCCATCGCAACTTATATCTGTaGTCTCAAACAATAGGCTGGACAAGTAAGCCTCAGCAAAGAGAA +
Preference number: 6 (lower is better)
Translates to: YTPNPTLLSHRNLYL*SQTIGWTSKPQQRE
Trigger: TTCTCTTTGCTGAGGCTTACTTGTCCAGCCTATTGTTTGAGACAACAGATATAAGTTGCGATGGGAGAGGAGCGTCGGATTTGGTGTGTA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENST00000344788.7