Pregenerated sensors for TERC (Homo sapiens)

Ensembl gene IDs: ENSG00000270141

Ensembl transcript IDs: ENST00000602385.1

Found 7 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	CCGAGAGACCCGCGGCTGACAGAGCCCAACTCTTCGCGGTGGCAGTaGGTGCCTCCGGAGAAGCCCCGGGCCGACCGCGGCCTCCAGGCG	+
Preference number: 5 (lower is better) Translates to: PRDPRLTEPNSSRWQ*VPPEKPRADRGLQA Trigger: CGCCTGGAGGCCGCGGTCGGCCCGGGGCTTCTCCGGAGGCACCCACTGCCACCGCGAAGAGTTGGGCTCTGTCAGCCGCGGGTCTCTCGG 74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602385.1
CDS CCA 90 bp	TCGCCCCCGAGAGACCCGCGGCTGACAGAGCCCAACTCTTCGCGGTaGCAGTGGGTGCCTCCGGAGAAGCCCCGGGCCGACCGCGGCCTC	+
Preference number: 5 (lower is better) Translates to: SPPRDPRLTEPNSSR*QWVPPEKPRADRGL Trigger: GAGGCCGCGGTCGGCCCGGGGCTTCTCCGGAGGCACCCACTGCCACCGCGAAGAGTTGGGCTCTGTCAGCCGCGGGTCTCTCGGGGGCGA 74% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENST00000602385.1
CDS GCA 90 bp	CCCACCAACAGGAAAGCGAACTGCATGTGTGAGCCGAGTCCTGGGTaGACGTCCCACAGCTCAGGGAATCGCGCCGCGCGCGGGGACTCG	+
Preference number: 5 (lower is better) Translates to: PTNRKANCMCEPSPG*TSHSSGNRAARGDS Trigger: CGAGTCCCCGCGCGCGGCGCGATTCCCTGAGCTGTGGGACGTGCACCCAGGACTCGGCTCACACATGCAGTTCGCTTTCCTGTTGGTGGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602385.1
CDS GCA 72 bp	CGCGCCGCGCGCGGGGACTCGCTCCGTTCCTCTTCCTaGGGCCTGAAAGGCCTGAACCTCGCCCTCGCCCCC	+
Preference number: 6 (lower is better) Translates to: RAARGDSLRSSS*GLKGLNLALAP Trigger: GGGGGCGAGGGCGAGGTTCAGGCCTTTCAGGCCGCAGGAAGAGGAACGGAGCGAGTCCCCGCGCGCGGCGCG 75% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602385.1
CDS CCA 72 bp	CCGCGGCTGACAGAGCCCAACTCTTCGCGGTGGCAGTaGGTGCCTCCGGAGAAGCCCCGGGCCGACCGCGGC	+
Preference number: 6 (lower is better) Translates to: PRLTEPNSSRWQ*VPPEKPRADRG Trigger: GCCGCGGTCGGCCCGGGGCTTCTCCGGAGGCACCCACTGCCACCGCGAAGAGTTGGGCTCTGTCAGCCGCGG 75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602385.1
CDS TCA 72 bp	CCTGAACCTCGCCCTCGCCCCCGAGAGACCCGCGGCTaGCAGAGCCCAACTCTTCGCGGTGGCAGTGGGTGC	+
Preference number: 6 (lower is better) Translates to: PEPRPRPRETRG*QSPTLRGGSGC Trigger: GCACCCACTGCCACCGCGAAGAGTTGGGCTCTGTCAGCCGCGGGTCTCTCGGGGGCGAGGGCGAGGTTCAGG 71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENST00000602385.1
CDS CCA 72 bp	AGAGACCCGCGGCTGACAGAGCCCAACTCTTCGCGGTaGCAGTGGGTGCCTCCGGAGAAGCCCCGGGCCGAC	+
Preference number: 6 (lower is better) Translates to: RDPRLTEPNSSR*QWVPPEKPRAD Trigger: GTCGGCCCGGGGCTTCTCCGGAGGCACCCACTGCCACCGCGAAGAGTTGGGCTCTGTCAGCCGCGGGTCTCT 71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENST00000602385.1

---

If you would like us to post a table for your organism of interest, or have questions, please reach out to eerik at stanford dot edu or xjgao at stanford.edu